LOC120547587 (ggps1,LOC102790345)


Basic Information

Item Value
gene id LOC120547587
gene name ggps1,LOC102790345
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 23337381 ~ 23351721 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039783067.1
GGGTTATCTTCTGGAGGGAGGGGAATAAAGGTGTGTTTTAGTGTTCAcagtttataatatatattgttGCACCCCGCACCGAGTTAGTTTTTTCTGTAGCGATAACTCCGATCTTTTTCTATGAAATAAAGCTCTTATATTCCACCATCTCAGTCTCCTGATAATTCATTGATTCATCTTCGGCATCTGAAAGTTTTCGACAGACTGGCGTGTACGAACACAATCGGAAAAGAGCCAATCGGGCAACTGGACAGCTGCACGACTGGGAGAGGGGACTACAGAAGCCTTTTTTTCACACAGAAAGAATAAGATTTTTGCAAACTTGAAGCAATGGATGGTGACTCAGAAGCCGTCACTGAGCAAATTTTGCTGAAACCATACAAGTACTTGTTGCAATTACAAGGAAAGAACGTGAGGACAAAACTATCCCAAGCATTTAACCACTGGCTCAATATTCCAGAGGACAAACTGCAGGTGATCATCCAGGTGACTGATGTGCTGCACAACGCCAGCTTGCTCATAGACGACATCGAGGACAGCTCCAAGCTGCGGCGAGGCTTCCCTGTGGCCCACAGCATCTATGGCATTCCCTCCGTTATCAACACGGCCAACTACGTCTACTTCCTGGGGTTAGAGAAGGTGCTGACCCTGGAGCACCCTGAGGCTGTCCGAGTGTTTACCCGGCAGCTGCTGGAGCTACACCGTGGTCAGGGTCTGGACATCCACTGGAGGGACACCTACACCTGTCCCACTGAGCAGGAGTACCGCAACATGGTGCTACAGAAAACTGGGGGGCTCTTTGGTCTGGCTGTGATCCTGATGCAGCTCTTCTCAGATTGGAAACAGGACCTGAAACCCCTTCTGGACACACTGGGCCTCTTCTTCCAGATCCGCGACGACTACGCCAACCTGACCTCTCGTGAGTACAGCGAGAACAAGAGCTTCTGTGAGGACCTGACTGAGGGAAAGTTCTCTTTCCCCACCATTCACGCCATATGGTCGTGTCCAGAGAGCACTCAGGTGCAGGACATCCTGAGGAAGCGCACAGAAATCATGGAAATCAAACaatactgtgtggactaccTGGAGAAGGTCGGCTCGTTTGCCTACACCCGTCAGACTCTGCGAGACCTGGAGGAGGAGGTCTACCGTCTCATCGGGGAGTTTGGGGGAAACCCTCAACTGGAGAGCCTCGTCAAACACCTCAGCCAAATGCATCGTGAGGCTGAAGCCGCAGCAGAGTCCAGTACTGAGCCACACTCCAACCAAAACCACTGACCTCATCCACCATAACTAACATACTAGTCCTTCACACTCCACTAAATAAAGTAAGATGTCTTAAGTGTATGATGTGTGATTTGGGGATCCTTAATCATTAAGCTGCCATTAAGAGTGCCAATCCCGTAGAAAAGACCTCTGCAACTCAACTGCCTACTTGTACAATAACATGCTGGCATTGTATGCAAAGTAGTGCTCATGCTGTTTATGCTCAGCTGTACATAAAAacttttgttttagtttattgCAGACTGCGTTTCCATCTGGTTCAGATTCACATCTCTAATGTTTTATTAGGGTGATTCAGTTGTGATATTTGTAAGTAGCAGACACTGTGCTGCAGTTATGAACTTCTTTTTATtcgtgaattaaaaaaaaactacatttca

Function

symbol description
ggps1 Predicted to enable prenyltransferase activity. Predicted to be involved in isoprenoid biosynthetic process. Orthologous to human GGPS1 (geranylgeranyl diphosphate synthase 1).

NR:

description
PREDICTED: geranylgeranyl pyrophosphate synthase

GO:

id name namespace
GO:0008299 isoprenoid biosynthetic process biological_process
GO:0016740 transferase activity molecular_function

KEGG:

id description
K00804 GGPS1; geranylgeranyl diphosphate synthase, type III

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039783067.1 True 1667 mRNA 0.47 4 23337381 23351721

Neighbor

gene id symbol gene type direction distance location
LOC120547586 ggps1,LOC102790345 coding upstream 18345 23303204 ~ 23319036 (+)
LOC120547578 NA coding upstream 211283 23112659 ~ 23126098 (+)
LOC120547579 NA coding upstream 226810 23099915 ~ 23110571 (+)
LOC120547580 NA coding upstream 243141 23084932 ~ 23094240 (+)
gpatch11 gpatch11,LOC102790129,LOC102788696 coding upstream 253475 23080979 ~ 23083906 (+)
gpr137ba gpr137b,LOC104924458,LOC103372484 coding downstream 136513 23488234 ~ 23494167 (+)
tsnax tsnax coding downstream 197419 23549140 ~ 23557843 (+)
map10 NA coding downstream 410687 23762408 ~ 23765382 (+)
ntpcr ntpcr,LOC103137650 coding downstream 414882 23766603 ~ 23770420 (+)
npas4l LOC101471891 coding downstream 503994 23855715 ~ 23860867 (+)
G196124 NA non-coding upstream 76326 23258136 ~ 23261055 (+)
G196111 NA non-coding upstream 147225 23189600 ~ 23190156 (+)
G196057 NA non-coding upstream 189746 23146812 ~ 23147635 (+)
G196036 NA non-coding upstream 192729 23136446 ~ 23144652 (+)
G196028 NA non-coding upstream 302590 23032452 ~ 23034791 (+)
G196140 NA non-coding downstream 2251 23353972 ~ 23354341 (+)
G196174 NA non-coding downstream 115573 23467294 ~ 23470444 (+)
G196184 NA non-coding downstream 145447 23497168 ~ 23533059 (+)
G196195 NA non-coding downstream 191886 23543607 ~ 23543838 (+)
LOC120548378 NA non-coding downstream 518823 23870544 ~ 23874163 (+)
tasp1 tasp1 other upstream 644777 22647914 ~ 22692604 (+)
kif16bb NA other upstream 1152889 22155402 ~ 22184492 (+)
G195653 LOC102296834 other upstream 1822253 21514526 ~ 21515128 (+)
fbxo11a fbxo11,LOC104951339 other upstream 2004804 21318610 ~ 21332577 (+)
G195518 NA other upstream 2583572 20752773 ~ 20753809 (+)
disc1 disc1 other downstream 210562 23562283 ~ 23611337 (+)
klhdc3 klhdc3 other downstream 467193 23818914 ~ 23851605 (+)
LOC120547848 LOC103369904,LOC106907288,LOC107081732 other downstream 1006205 24357926 ~ 24367599 (+)
LOC120548495 ate1 other downstream 1016233 24367954 ~ 24426502 (+)
G196439 wdr11 other downstream 1212829 24564550 ~ 24569167 (+)

Expression


Co-expression Network