si:ch73-105b23.6 (LOC104955877)


Basic Information

Item Value
gene id si:ch73-105b23.6
gene name LOC104955877
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 26495508 ~ 26521577 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039783071.1
CATGGTCTGCGTTGATATAGACGAGTGTAAAGACAACCCGTGCCATGTCAATGCAACATGCCTCAACACCATCGGGTCCCACACGTGCACCTGTAAGCGAGGTTTTTCAGCAAATGGCGCCCAGTGTAAAGATATAGACGAGTGTTCTGTGAAGGATACATGCCACCCACGGGCACTATGCACCAACGTCATGGGGGAATTCTTTTGCTCATGTCAGCAGGGTTTTAAAGGGGATGGCTTCTCCTGTCAGGATATTGACGAGTGCACCCTCTCTGATACCGTTTGTCCAGCCTTCTCAAAGTGTATCAACTCCCCTGGTGCTCATGTCTGTTCATGTTTGAATGGCACAGTGGCCTTTAATGGTACCTGTGTGCAACCCAGTCCATTGTGTAACCCTGTCTGCCACTTCCATGGCCTGTGCCACCAATCGCCTGCTGgataccagtgtgtgtgtgacctgggTTACGTGGGTGACGGGCTGGCTTGCTCGGATATAGATGAGTGCCAGAGGGAAAACATTTGTCCTCAAAATGAAACGGAGTGTATGAATATCCCAGGATCGTTTTCCTGTGTCTGCAAAAAGGGCTACACACTCAATGGAACACAGTGTGTTGATGTGAACGAGTGTAAAATGGGTCAGCATGACTGCAGTGACTTTGCCCAGTGTGTCAACACAATGGGCAACTATTCCTGCTTCTGTCTCGGTGGCTTCACAGGCAACGGGAAGAACTGCTCTGAGAGCAACCTGTACCCCTTTGGAGCAGAGGTTGGTGATAAAGGAGTCAAGATGGACACAGAAGATGGGAATTCCCCATACATCACGCCACCGATGGGTTTCCTTTTTATGGGAAAATTGTACGACAGGGTTTATTTTTCAGACAATGGCCTTGTCCACTTTCAATCTGTCGTTGAGAATGAGCAGTACCTGCTCCCCGCTCCTTCAGCCAGTGGTTTCCCCGACAACATAAATGTGACCCTGTTAGCTGCGTTTTGGGATGATGCTGACCTCACGCAGGGGGATGGACGGCTCCTCTATCAGGAATACCACAAGCTTGATATGTCAGATGTCTACTCCCAGGTAGTCTTTAACCGTACGGCAGACGATGTGACAAAGTTTGAGGAGCGGAGAGGCAAGCCTGCCTTCACCCCTGCCTGGATCCTCAAGATCACCTGGGACCATGTGATGCCCGTCTCCTACCAGAAGATCAACTTCTCAGAGACTAACACTTTCCAGTGTGTCCTGACCACCGATGGAGCACGCTCGTTTGCCCTCCTGCGATACGGGGAGATGCGTTGGGGTCCTGGCCAGAGAAAATACCACGACGCTCTCATCGGCTACACAAATGGAAAATCCTCCCACAAGGAGCCCACTGTACCCCCAGAAAACCTTTTCGGGCCTGGGGGCAGATACAGGCCCCAGCAGGTGAAAGGGGTCATGGGAAAGTTGGGTCAGCTGGTGTACGATTTGACAGCATCAGCAGGGTCGGACGTGGATTTGCGTATGAAGTGCCAGGTGTGGGCGATGAAGGAGCCTGACCCTGCTGCGTGGACAAGGGAGCTGTCTTCATGTCCCTGCACCCGCGCCCAGGCTCTGGAGGACCTGTCCTTCTTGCAGGATACTACTGATGCGGGATCAAGGGTGAAGACGCTGAGGGGTCAGCGGTGGGGGGGCGCAGGGGGGCATGTCTTCCAGTCCATCCTGTCCAGCAGACAAGGTTCAGGGAAGAGATGTGTGTATGACCCAGATGGTCCGCTGCTGGCTGGGTACAACGAGCGCTACTTCTCCGGAAACAGCATCCAAAAACATATTGATGAAGATCTCCTGCCATTCCAGTGGTGTTGTATCGAGTCTCCTCTATGCCACCTTTACCTCAACAAGAGACCACTGGACCGTTGCCAAGGTTGCAGCTGGGCTGGCCCTGACGGCTGCACTCTATCCAAGCAGGCGACGCGGGGTGTAGGGATGGTGTACGGCAGCCTCCATTTCATCACCTTCGATGGGACAGAGTACTCCTTCAAGGCCCTTGGCGAGTTTGTGATATTGCGTCTGTCCTCCGCCACCGGCTCTAATATCTTCACCCTACAAGGACAGACTGACAAGCTATGCACAGACGCAAAGGGGATCATTGAGGTCCCAGTGGTGGTGCGCATGGCTGCCTTCCACCAAGGCATTGGCAAGATTGAATGGAGATGTGTGGAGAAAGGAGACGGACTGCAGATTTTTGTGGATGATGTTGAAGTCCCTGTAACAGTTGGTGTCGTGCACGTGGGTGAGAAGGACTTTGCTGTGCGCTGTATGTCAGTGAATCGCTGTGCGGCGGTGTACGCCAGTGGTCTCCACGTGGTGGCGTGGCGGGTTGTTGGTCAAAATCAGCTGGCGGCCATGGTGGAGGTTCCTCAGGCCTTCTACAACCGCACTGTGGGTCTCATGGGTCTCTGGAGCTCCAACCGTTCCGACGATTTCCTCATGTCTGACGGCAGGCTCCTCCCCTCGACAAACCTCAACCCCCCCTCAGAGGAGAGACTGCACGGCTTCGGCTTGTCCTTTCCTGTCCCAGAGAGTCTGTTGTTCTCTTCACCTCCTCTGGTTCCACTGGAGCCTGTCTCCTCTGAGCAACTGCTGGAAAGCGCCAGTCCTGCTGAGGTGGAGGGCCTGAGGAGAACCTGTGAAGGCAGCATGCAGTGTGTCTACGACACGCTAGCAACCGGCAGCTCTGACCTGGGCCTGCGGACTCTGGACGCCAAGAAACAATATGACAACCTGGCTCTGATCTATGGTAACATGCCTCCCATAGTGAAAGGGCCCGCAGTGATCCGCGGTATCGTCAACTCCACAGTCAACATTCAGATTGTCGCCCAGGACCCAAACGGAGACCCCATCACCTACTCACTGCTCAACCCCAGGCCTCCACGGACTTCCATAGGCAGCGGTGACGGCATCCTGACATGGACGCCCCTGACCACACAGCCAGTCCAGCTGACCATTAAAGTCAGAGACAAGCTCACCAGCTCCCTGTTCACCCCCATCCTGCACGTCTGCAACTGCCTCAACGGAGGGTCCTGTCAGTACGACAGCATCACTAACAACTACCAGCAGGGAACCTTCCAGGTGGTAGGGTGCCTGTGCCCGAAGGGATTCAGTGGAAAGTTCTGTGGGAAAACTGCAGACATATGTCAAGGCAAACCCTGTTTTCGAGGAGTGCAGTGCAAGTCCGAGTCAAAGCCTGGCCAGTTCACCTGCGGCGAGTGTCCCAATAATACTGTCTCTGGGGGGAAACAGGGATACAAGTGCTTTGAGCATGACATGTGCAGCCCTCCTTTCCCCTTCCCCTGCCACAAAGATGCCGACTGCCTCAGCACGAAACAAAGCTTCACCTGCACATGCAAGCCTGGCTTTACAGGAGACGGAGGCAACTGCACAGATATAGATGAGTGTGCAATGCTCACAACCTGTCCCAACGCTAAGTTTGAATGTAAGAACAAGCCCGGCTCTGTGGAATGCATCTGTAGATACCAGAAGACCAAGGACACTGATGGATGTGGTGACTCTGCCAATCCTCCAGGGTTTAATGTGTTCAACGTCTCTATGGACCGGATGAAGAACAGACCTGATGGACtccaacagCTGGTGGACATTCTGTCGATGGGTTTCCAGAACAAATTCTACAACGCCAGCAAGAAGGATCCAGTGCAGGGCTCCAATTCCGATGTGACAGAGTATCGTATCAACATGTCCAGTGACACCCCCCACTGGTACATCAGAGACTACCTGGCCAGAGTCAGCAGCCACCATGACATCAGGAGCGTAGAAGTTGATGATCTGGATGAGTGTAAGTCCAAGGAAGCGATGTGCGCCCACCCTGCCCTCTGCACCAATACTTACGGAGGCTACAGGTGTGTTTGCAATGGCACAACTGATGTGGATAACAGCCAGTCCTGTGTGTTAGGCCGAGACAAGGTGAATGCTATGGAACAAGACCTTGTTCTGGGCCTGGTTCTGGGCATCGGCATCCCTCTGCTTTTGCTGCTGCTCTTGGCTGCGCTGGCCTGCTTCTGCTGCCGCAAGAAGACTATTACCGGAGACCTCCAGCACATGATGCCAGACTACATCCAGGAGCAGTACAACCCTCCGCCCTTCAACTACTCTGACCCTGCCCTCCACTACATTACCCACAGCAGCCCCCGGATCCTAGACCACTACATACCCAGGCAACGCCACAGATAGTACATACTAaaaccacatacacataaatgcaattaaacacacaaagaaaatgcACGGGCTTCTAAACACAAGCGCAAGCACCTTTTGGAGCCACcgtatatgttttataaagacaAGATGAATGACTCTTATTTATATCGTAACAAACAAGTAATTCAACCTGAGTGACTTTTAAAGCCAATTATTTCCAATTCTCTCCGCTGAGCAATGGACCTGCCAAGTTTAAACTGGAAGTTTTTTTTGCCAGGACAACAGTTTACAGTCAGAGTCTGACCCAGCAGAACTCAAGAATCTCTTGGCTGGAGACAGTGATGAAAAGTAAACCACTGCAGTGGTCTTTAGTTTCCAGCTGATACTAGGCCAACAGCCTCCTTGATAGCAACATTAGCATCAGGCAGAATACCTGGCATCAGGCTCCTGCCCTTGATCCAGTGCGTTATGGTTCTCCAAAATGTACAGTAATACATCCATATTTGTATCACTCAAAATCACCAAAAGACATAGTTGATTCAATTTATGTGTTATTAATTTTTGCAAACACACAATCCATTAAAAAATTAGGTGACGTGGTTTTCTAAAAGCATTCATCCCACTTTGGGATTACACTCTAGATGATTGTCCATTGCTGGATTGTGTCCCAGTTAATTTAACACAGCAGAGTATTTCAGTGTTTCAGTTGGCAGCTGTCTTTTGTGAGGCTGGACTGTCACTGCAAGTTAAAATACAATGtgtaaatataatgtaaatCAAAGTGCCACTTTAGTAACATTGTGCTGGGGGGATGTTATTTCAAGAACATAGCAACTTGGATGTTGGTGTACCCTACCTCTACCTACTCTGACCTCCCATTGGAGAGGAAAATGAATACCACATTTGTCATTTACCTGCAAGCTGATACATGTCAAGTTGAAGCTGCTGATAgttataaaagaaaatattatttatatatatatatatatatagt

Function

NR:

description
PREDICTED: fibrillin-1-like

GO: NA

KEGG:

id description
K22017 MUC4; mucin-4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039783071.1 True 5189 mRNA 0.51 22 26495508 26521577

Neighbor

gene id symbol gene type direction distance location
plekhh2 plekhh2 coding upstream 18781 26414524 ~ 26476727 (+)
trnai-uau_2 NA coding upstream 512670 25982745 ~ 25982838 (+)
hcar1-3 NA coding upstream 515071 25977457 ~ 25980437 (+)
haao haao coding upstream 525992 25962355 ~ 25969516 (+)
xpo1b xpo1,LOC104925896,LOC103353500,LOC102296990,LOC103154927,LOC101480205,LOC106952069,LOC103477318 coding upstream 607434 25860831 ~ 25888074 (+)
calm2a calm1,LOC102778633,LOC102293206,LOC107396020 coding downstream 6206 26527783 ~ 26531726 (+)
mcfd2 mcfd2 coding downstream 97840 26619417 ~ 26622570 (+)
LOC120547700 plac9 coding downstream 236756 26758333 ~ 26767338 (+)
LOC120547537 NA coding downstream 344048 26865625 ~ 26873668 (+)
valopa valop,LOC104938804,LOC106940109,LOC107093123 coding downstream 655391 27176968 ~ 27206666 (+)
G196967 NA non-coding upstream 184222 26291118 ~ 26311286 (+)
LOC120548056 NA non-coding upstream 365977 26122891 ~ 26129531 (+)
G196935 NA non-coding upstream 377868 26117101 ~ 26117640 (+)
LOC120548055 NA non-coding upstream 384333 26106533 ~ 26111175 (+)
G196921 NA non-coding upstream 394486 26100492 ~ 26101022 (+)
G197027 NA non-coding downstream 11455 26533032 ~ 26533234 (+)
G197029 NA non-coding downstream 18267 26539844 ~ 26540135 (+)
G197035 LOC104925924,LOC104948680,LOC103376065 non-coding downstream 103058 26624635 ~ 26627702 (+)
G197069 LOC103370964,LOC104925911,LOC102295618,LOC103148144 non-coding downstream 218680 26740257 ~ 26746085 (+)
G197084 nkx6-2,LOC102789131 non-coding downstream 543149 27064726 ~ 27104508 (+)
LOC120548053 LOC103353497,LOC102790632,LOC102299158,LOC102194143,LOC101482614,LOC100706574 other upstream 669079 25817251 ~ 25826429 (+)
zgc:110045 LOC102779765,LOC102305383,LOC100704767,LOC101482925,LOC102197868 other upstream 820602 25594496 ~ 25674906 (+)
prdx3 prdx3 other upstream 874833 25613407 ~ 25620675 (+)
LOC120548229 rab11fip2 other upstream 1000003 25481831 ~ 25495505 (+)
cacul1 cacul1,LOC103374658,LOC102794354 other upstream 1351254 25139047 ~ 25144254 (+)
stpg4 LOC103353520,LOC101467386,LOC102793681,LOC102299197 other downstream 13707 26535284 ~ 26548760 (+)
G197053 NA other downstream 141582 26663159 ~ 26663785 (+)
tmem254 NA other downstream 204139 26725716 ~ 26735787 (+)
pwwp2b pwwp2b other downstream 352638 26874215 ~ 26953805 (+)
LOC120547882 inpp5a other downstream 404841 26926418 ~ 27109140 (+)

Expression


Co-expression Network