fgf8a (fgf8,LOC104933818,LOC106515330,LOC108239148)


Basic Information

Item Value
gene id fgf8a
gene name fgf8,LOC104933818,LOC106515330,LOC108239148
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 33250788 ~ 33258175 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039783105.1
aaagggggcttGTTCTTAGGAGATCAGCCTGCCATTTTAACCGAGGGGTGTGTGAGCGCCGATCGAGAGGCTTGACACGGGAGCGCTGTGGGAtgggaacagagagagaggagagacggaGCGTCCAGTCTGCAGTCCTGACACAGCCGAgcggagcagcagcagcagcagcgagtcTCCTCTACAGCGGgatctcactcacacacacacacacacacacacctgaaggCCGCGGAGGACCACGGGGATTACAAAGCACGCGGAAATAGCCTGACAGAATGGACCAaattgtttgtaaaaataaataattaagacaaatagaagaagaaaaccCTGCTGAGTTTTTtggggttatttttttttctatttccatCCCCGAAAGTTCAGCGTACAGCTCCGCTTCTGAAAGTGCACTTAGACTTTTGCTGTAGCCTTCTGACAGAATcaggtttttatttgaaggagaAATTGTCAATTCGTCATCACTGGCTATTGGGCTGTTTAAGGGGAGCCTGATCATGGACATTCATTTAATGAGGAAAGTGCCCGATGTGCGTGCATGAGCCTCTCTGTCAGCACCTCTGaccttctttttttgtgtggattTCGGTGAAATTTCTTTTTGGGACGTCGCGTGTTTGATTTGTAACGAGATCAGCTGGACTTTGCCGCTCTGAGAGGGTCCTGGAAGAGCTTTTCACCTCCATCCAACATGCGACCCATCCCGTCCAGACTCAGCTATCTGTGTCTACACTTATTCGCGTTCTGCTACTATGCTCAGGTAACCAATCAGTCCCCGCCTAATTTCACGCAGCATGTAAGCGAGCAGAGCGAAGTGACGGACCGCGTGAGCCGCAGGTTGATCCGGATCTACCAGCTGTACAGCCGGACCAGCGGCAAGCACGTGCAGGTCCTGCCCAACAAGAAGATCAACGCCATGGCCGACGATGGAGATGTGCacgCTAAACTCGTCGTGGAAACAGACACGTTTGGGAGCCGAGTGCGCATCAAGGGAGCCGAGACGGGCTTCTACATCTGCATGAACAAAAAGGGGAAGCTCATCGGCAAGAAAAACGGACAAGGCCGCGACTGTATCTTCACCGAGATCGTCCTGGAGAACAACTACACGGCGCTGAGGAACGCCCGCTACGAGAGCTGGTACATGGCGTTCACCCGGCGCGGGCGGCCACGGAAAGGCTCGCGGACGCGCCAGCACCAGCGCGAGGTCCATTTCATGAAGAGGCTGCCGAAGGGGCAGCAGCCCGTCCACTCGAGCCACCACCGCCCTTTCGACTTCATCCACTACCCTTTCAGTCAAAGGACTAAACGCACGCGCTACTCGTCCCAGcgctgaggaggagggagagagagagagaagggacaGAGAGAAAAGTGGAGAAACTGACAGACAAGCAGCCGGCGCACTCCTCCACtctccaaaaaaa
>XM_039783106.1
aaaaaagggggcttGTTCTTAGGAGATCAGCCTGCCATTTTAACCGAGGGGTGTGTGAGCGCCGATCGAGAGGCTTGACACGGGAGCGCTGTGGGAtgggaacagagagagaggagagacggaGCGTCCAGTCTGCAGTCCTGACACAGCCGAgcggagcagcagcagcagcagcgagtcTCCTCTACAGCGGgatctcactcacacacacacacacacacacacctgaaggCCGCGGAGGACCACGGGGATTACAAAGCACGCGGAAATAGCCTGACAGAATGGACCAaattgtttgtaaaaataaataattaagacaaatagaagaagaaaaccCTGCTGAGTTTTTtggggttatttttttttctatttccatCCCCGAAAGTTCAGCGTACAGCTCCGCTTCTGAAAGTGCACTTAGACTTTTGCTGTAGCCTTCTGACAGAATcaggtttttatttgaaggagaAATTGTCAATTCGTCATCACTGGCTATTGGGCTGTTTAAGGGGAGCCTGATCATGGACATTCATTTAATGAGGAAAGTGCCCGATGTGCGTGCATGAGCCTCTCTGTCAGCACCTCTGaccttctttttttgtgtggattTCGGTGAAATTTCTTTTTGGGACGTCGCGTGTTTGATTTGTAACGAGATCAGCTGGACTTTGCCGCTCTGAGAGGGTCCTGGAAGAGCTTTTCACCTCCATCCAACATGCGACCCATCCCGTCCAGACTCAGCTATCTGTGTCTACACTTATTCGCGTTCTGCTACTATGCTCAGCATGTAAGCGAGCAGAGCGAAGTGACGGACCGCGTGAGCCGCAGGTTGATCCGGATCTACCAGCTGTACAGCCGGACCAGCGGCAAGCACGTGCAGGTCCTGCCCAACAAGAAGATCAACGCCATGGCCGACGATGGAGATGTGCacgCTAAACTCGTCGTGGAAACAGACACGTTTGGGAGCCGAGTGCGCATCAAGGGAGCCGAGACGGGCTTCTACATCTGCATGAACAAAAAGGGGAAGCTCATCGGCAAGAAAAACGGACAAGGCCGCGACTGTATCTTCACCGAGATCGTCCTGGAGAACAACTACACGGCGCTGAGGAACGCCCGCTACGAGAGCTGGTACATGGCGTTCACCCGGCGCGGGCGGCCACGGAAAGGCTCGCGGACGCGCCAGCACCAGCGCGAGGTCCATTTCATGAAGAGGCTGCCGAAGGGGCAGCAGCCCGTCCACTCGAGCCACCACCGCCCTTTCGACTTCATCCACTACCCTTTCAGTCAAAGGACTAAACGCACGCGCTACTCGTCCCAGcgctgaggaggagggagagagagagagaagggacaGAGAGAAAAGTGGAGAAACTGACAGACAAGCAGCCGGCGCACTCCTCCACtctccaaaaaaa

Function

symbol description
fgf8 Enables growth factor activity; type 1 fibroblast growth factor receptor binding activity; and type 2 fibroblast growth factor receptor binding activity. Involved in several processes, including animal organ development; dopaminergic neuron differentiation; and negative regulation of cardiac muscle tissue development. Acts upstream of or within fibroblast growth factor receptor signaling pathway. Located in extracellular space. Implicated in hypogonadotropic hypogonadism 6 with or without anosmia and prostate carcinoma in situ. Biomarker of breast cancer; choriocarcinoma; embryonal carcinoma; endodermal sinus tumor; and prostatic hypertrophy.

NR:

description
PREDICTED: fibroblast growth factor 8-like isoform X1

GO:

id name namespace
GO:0008543 fibroblast growth factor receptor signaling pathway biological_process
GO:0005576 extracellular region cellular_component
GO:0005104 fibroblast growth factor receptor binding molecular_function
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K04358 FGF; fibroblast growth factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039783105.1 True 1445 mRNA 0.53 5 33250791 33258175
XM_039783106.1 False 1415 mRNA 0.53 5 33250788 33258175

Neighbor

gene id symbol gene type direction distance location
LOC120547668 LOC106676435,LOC106674820 coding upstream 467354 32779516 ~ 32783434 (+)
LOC120547622 NA coding upstream 584116 32662087 ~ 32666672 (+)
LOC120547814 NA coding upstream 590922 32656986 ~ 32659866 (+)
fancl fancl coding upstream 767122 32445087 ~ 32483666 (+)
bcl11aa bcl11a,LOC103363701,LOC102779517 coding upstream 1677167 31512864 ~ 31573621 (+)
fbxw4 NA coding downstream 20797 33278972 ~ 33355371 (+)
wbp1la NA coding downstream 123487 33381662 ~ 33392267 (+)
LOC120547582 NA coding downstream 137257 33395432 ~ 33412701 (+)
nt5c2a LOC101476423,LOC102302397 coding downstream 167176 33425351 ~ 33464609 (+)
LOC120547725 LOC104935158,LOC103367215 coding downstream 222226 33480401 ~ 33507482 (+)
G198269 NA non-coding upstream 167978 33082607 ~ 33082810 (+)
G198257 NA non-coding upstream 229352 33021035 ~ 33021436 (+)
G198221 NA non-coding upstream 326886 32923682 ~ 32923902 (+)
G198215 NA non-coding upstream 334311 32916022 ~ 32916477 (+)
G198165 NA non-coding upstream 534473 32710781 ~ 32716315 (+)
G198287 NA non-coding downstream 17807 33275982 ~ 33276534 (+)
G198291 NA non-coding downstream 98179 33356354 ~ 33356724 (+)
G198292 NA non-coding downstream 98681 33356856 ~ 33357267 (+)
LOC120548204 NA non-coding downstream 160522 33418697 ~ 33419560 (+)
G198324 NA non-coding downstream 211383 33469558 ~ 33469783 (+)
slc2a15a LOC103367959,LOC104935160,LOC103476520,LOC106961144,LOC103155793 other upstream 50926 33157729 ~ 33199862 (+)
G198245 rab1a,LOC104962072,LOC102231865 other upstream 285714 32962388 ~ 32965074 (+)
G198185 NA other upstream 456127 32793288 ~ 32794661 (+)
G197999 NA other upstream 2016065 31234364 ~ 31234723 (+)
LOC120547658 NA other upstream 3048968 30153511 ~ 30201820 (+)
si:ch211-51a6.2 LOC104924867,LOC103357113,LOC100694100 other downstream 723336 33981511 ~ 34008003 (+)
LOC120548523 NA other downstream 1637008 34895183 ~ 34948460 (+)

Expression


Co-expression Network