smoc2 (smoc2)


Basic Information

Item Value
gene id smoc2
gene name smoc2
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 24954712 ~ 24976820 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039783126.1
acacgggggggggggggaatcgaaCTGCCAGAATTAAGGAGAGTGTCTACACCAACGGTTTGGCAGACGAAACCAAGGAGACGAAGTGAAATAAACCAGCAACCACGTCTCTCCAACACTCCAACATTTTTTTCGCAAGGACTACTGTGGATTTTTAAACCTTTTCGACTTCTCCCAAAGACAATTTTTGTGCTTTGGTGAAGTCCAGGCAACACAGAGTAACATTTGGACGTGCGTAATTTGGAGAGTTTATTGCCACACGGCGTCAGGATGCGCGTATGTCCGCTGCTGGTCTTCCTCTGTCTGCTGTGCGCTGGACGCGCTCAAAAGTTCTCTGCTCTCACGTTCCTGCGGGTGGATCAGGATAAGGAGTGCAACATGGAATGCACAGGAGCTCCCCGCAAGCCCCTGTGCGCCTCCGACGGCCGGACCTTCACATCTCGCTGCGAGTTCCTCCGAGCCAAGTGCCGTGACCCCCAGCTGGAGGTCATTCGAGGGCCATGCAAAGATACATCCAGATGTGTAGCAGAGAAGAAGTACACCGAGCAGCAGGCTAAGAAGCTCTTCCCGCAGGTCTTTGTGCCTGTATGCAACCCTGATGGCACATATAGTGAGGTTCAGTGCCACAGTTACACTGGATACTGTTGGTGTGTCACCCCCAATGGCCGACCCATTAGTGGCTCAGCTGTGGCCAATAAAAAACCTCGATGCCAAGGTTCAAAACAAGAGCGAGCTACTACAAGAGAGCCAGGTAAAGCAGTCTCCTTGCAAATATTCTCCATTCTAAATGCAGATGAGACTGGCCTAGTGGTGGATCCACAGCCTGCTGGCGATGAAGAAGACATCATTTCCCAGTACCCCACTCTGTGGACGGAGCAGGTTCGCAGCCGACAGAACAATAGAACCAGAGCACCATCCTCATCCTGTGACCAGGAGCAGCAGTCTGCCCAGGAAGAGGCGAAGCAGCACAAGAACGATGCTGTATTCGTACCAGACTGTGCCCATGGAGGACTGTACAAGCCAGTCCAATGCCACCCCTCCACCGGCTACTGCTGGTGTGTGCTGGTGGACACGGGACGGCCCATACCTGGGACTTCCACCAGGTGGGAGAGACCGCACCTATGGTATGAACAGCCAAAGTGCGATGGCAATGCCAGGGCCCACCCGACTAAACCTAAGGACCATTATAGAAGCAGACATCTCCAGGGCTGTCCCGGGGCAAAGAAAACAGAGTTTCTGACAAGTGTTCTTGACGCGCTGTCAACAGACATGGTGCACGCCGTCACAGATCCAGCATCCGCCGGAAGGATGGCCGAGCCCGACCCCAGCCACACCCTGGAGGAGAGGGTGGTCCACTGGTATTTTAGTCAGCTGGACAAAAACTCCAGCGGGGACATTGGAAAGAAGGAGATCAAGCCTTTCAAACGCTTTCTGCGCAAGAAATCAAAGCCAAAGAAGTGTGTGAAGAAGTTTGTGGAGTACTGCGACATTAGCAACGACAAGGCGCTGTCTCTGCAGGAGCTGATGGGTTGCCTCGGGGTGACCAAAGAAGAGGGGGCCAAACCAGTAGAGGGTTTATCTTCCAGTAAACTAAATCCCTCGAAGAAGCAAGGCTAAGCCAGCATCTGAGATTTCCCCTCCCGCAAGGAGAATCTGCCCTTACCAGTCGGCAATAATGGAAACCATAGTATTTGCACtttgtactttaaaaaaaaaaaa
>XM_039783127.1
cacgggggggggggggaatcgaaCTGCCAGAATTAAGGAGAGTGTCTACACCAACGGTTTGGCAGACGAAACCAAGGAGACGAAGTGAAATAAACCAGCAACCACGTCTCTCCAACACTCCAACATTTTTTTCGCAAGGACTACTGTGGATTTTTAAACCTTTTCGACTTCTCCCAAAGACAATTTTTGTGCTTTGGTGAAGTCCAGGCAACACAGAGTAACATTTGGACGTGCGTAATTTGGAGAGTTTATTGCCACACGGCGTCAGGATGCGCGTATGTCCGCTGCTGGTCTTCCTCTGTCTGCTGTGCGCTGGACGCGCTCAAAAGTTCTCTGCTCTCACGTTCCTGCGGGTGGATCAGGATAAGGAGTGCAACATGGAATGCACAGGAGCTCCCCGCAAGCCCCTGTGCGCCTCCGACGGCCGGACCTTCACATCTCGCTGCGAGTTCCTCCGAGCCAAGTGCCGTGACCCCCAGCTGGAGGTCATTCGAGGGCCATGCAAAGATACATCCAGATGTGTAGCAGAGAAGAAGTACACCGAGCAGCAGGCTAAGAAGCTCTTCCCGCAGGTCTTTGTGCCTGTATGCAACCCTGATGGCACATATAGTGAGGTTCAGTGCCACAGTTACACTGGATACTGTTGGTGTGTCACCCCCAATGGCCGACCCATTAGTGGCTCAGCTGTGGCCAATAAAAAACCTCGATGCCAAGGTTCAAAACAAGAGCGAGCTACTACAAGAGAGCCAGGTAAAGCAGTCTCCTTGCAAATATTCTCCATTCTAAATGCAGATGAGACTGGCCTAGTGGTGGATCCACAGCCTGCTGGCGATGAAGAAGACATCATTTCCCAGTACCCCACTCTGTGGACGGAGCAGGTTCGCAGCCGACAGAACAATAGAACCAGAGCACCATCCTCATCCTGTGACCAGGAGCAGCAGTCTGCCCAGGAAGAGGCGAAGCAGCACAAGAACGATGCTGTATTCGTACCAGACTGTGCCCATGGAGGACTGTACAAGCCAGTCCAATGCCACCCCTCCACCGGCTACTGCTGGTGTGTGCTGGTGGACACGGGACGGCCCATACCTGGGACTTCCACCAGGTATGAACAGCCAAAGTGCGATGGCAATGCCAGGGCCCACCCGACTAAACCTAAGGACCATTATAGAAGCAGACATCTCCAGGGCTGTCCCGGGGCAAAGAAAACAGAGTTTCTGACAAGTGTTCTTGACGCGCTGTCAACAGACATGGTGCACGCCGTCACAGATCCAGCATCCGCCGGAAGGATGGCCGAGCCCGACCCCAGCCACACCCTGGAGGAGAGGGTGGTCCACTGGTATTTTAGTCAGCTGGACAAAAACTCCAGCGGGGACATTGGAAAGAAGGAGATCAAGCCTTTCAAACGCTTTCTGCGCAAGAAATCAAAGCCAAAGAAGTGTGTGAAGAAGTTTGTGGAGTACTGCGACATTAGCAACGACAAGGCGCTGTCTCTGCAGGAGCTGATGGGTTGCCTCGGGGTGACCAAAGAAGAGGGGGCCAAACCAGTAGAGGGTTTATCTTCCAGTAAACTAAATCCCTCGAAGAAGCAAGGCTAAGCCAGCATCTGAGATTTCCCCTCCCGCAAGGAGAATCTGCCCTTACCAGTCGGCAATAATGGAAACCATAGTATTTGCACtttgtactttaaaaaaaaaaaa
>XM_039783128.1
acacgggggggggggggaatcgaaCTGCCAGAATTAAGGAGAGTGTCTACACCAACGGTTTGGCAGACGAAACCAAGGAGACGAAGTGAAATAAACCAGCAACCACGTCTCTCCAACACTCCAACATTTTTTTCGCAAGGACTACTGTGGATTTTTAAACCTTTTCGACTTCTCCCAAAGACAATTTTTGTGCTTTGGTGAAGTCCAGGCAACACAGAGTAACATTTGGACGTGCGTAATTTGGAGAGTTTATTGCCACACGGCGTCAGGATGCGCGTATGTCCGCTGCTGGTCTTCCTCTGTCTGCTGTGCGCTGGACGCGCTCAAAAGTTCTCTGCTCTCACGTTCCTGCGGGTGGATCAGGATAAGGAGTGCAACATGGAATGCACAGGAGCTCCCCGCAAGCCCCTGTGCGCCTCCGACGGCCGGACCTTCACATCTCGCTGCGAGTTCCTCCGAGCCAAGTGCCGTGACCCCCAGCTGGAGGTCATTCGAGGGCCATGCAAAGATACATCCAGATGTGTAGCAGAGAAGAAGTACACCGAGCAGCAGGCTAAGAAGCTCTTCCCGCAGGTCTTTGTGCCTGTATGCAACCCTGATGGCACATATAGTGAGGTTCAGTGCCACAGTTACACTGGATACTGTTGGTGTGTCACCCCCAATGGCCGACCCATTAGTGGCTCAGCTGTGGCCAATAAAAAACCTCGATGCCAAGGTTCAAAACAAGAGCGAGCTACTACAAGAGAGCCAGGTAAAGCAGATGAGACTGGCCTAGTGGTGGATCCACAGCCTGCTGGCGATGAAGAAGACATCATTTCCCAGTACCCCACTCTGTGGACGGAGCAGGTTCGCAGCCGACAGAACAATAGAACCAGAGCACCATCCTCATCCTGTGACCAGGAGCAGCAGTCTGCCCAGGAAGAGGCGAAGCAGCACAAGAACGATGCTGTATTCGTACCAGACTGTGCCCATGGAGGACTGTACAAGCCAGTCCAATGCCACCCCTCCACCGGCTACTGCTGGTGTGTGCTGGTGGACACGGGACGGCCCATACCTGGGACTTCCACCAGGTGGGAGAGACCGCACCTATGGTATGAACAGCCAAAGTGCGATGGCAATGCCAGGGCCCACCCGACTAAACCTAAGGACCATTATAGAAGCAGACATCTCCAGGGCTGTCCCGGGGCAAAGAAAACAGAGTTTCTGACAAGTGTTCTTGACGCGCTGTCAACAGACATGGTGCACGCCGTCACAGATCCAGCATCCGCCGGAAGGATGGCCGAGCCCGACCCCAGCCACACCCTGGAGGAGAGGGTGGTCCACTGGTATTTTAGTCAGCTGGACAAAAACTCCAGCGGGGACATTGGAAAGAAGGAGATCAAGCCTTTCAAACGCTTTCTGCGCAAGAAATCAAAGCCAAAGAAGTGTGTGAAGAAGTTTGTGGAGTACTGCGACATTAGCAACGACAAGGCGCTGTCTCTGCAGGAGCTGATGGGTTGCCTCGGGGTGACCAAAGAAGAGGGGGCCAAACCAGTAGAGGGTTTATCTTCCAGTAAACTAAATCCCTCGAAGAAGCAAGGCTAAGCCAGCATCTGAGATTTCCCCTCCCGCAAGGAGAATCTGCCCTTACCAGTCGGCAATAATGGAAACCATAGTATTTGCACtttgtactttaaaaaaaaaaaa
>XM_039783129.1
acacgggggggggggggaatcgaaCTGCCAGAATTAAGGAGAGTGTCTACACCAACGGTTTGGCAGACGAAACCAAGGAGACGAAGTGAAATAAACCAGCAACCACGTCTCTCCAACACTCCAACATTTTTTTCGCAAGGACTACTGTGGATTTTTAAACCTTTTCGACTTCTCCCAAAGACAATTTTTGTGCTTTGGTGAAGTCCAGGCAACACAGAGTAACATTTGGACGTGCGTAATTTGGAGAGTTTATTGCCACACGGCGTCAGGATGCGCGTATGTCCGCTGCTGGTCTTCCTCTGTCTGCTGTGCGCTGGACGCGCTCAAAAGTTCTCTGCTCTCACGTTCCTGCGGGTGGATCAGGATAAGGAGTGCAACATGGAATGCACAGGAGCTCCCCGCAAGCCCCTGTGCGCCTCCGACGGCCGGACCTTCACATCTCGCTGCGAGTTCCTCCGAGCCAAGTGCCGTGACCCCCAGCTGGAGGTCATTCGAGGGCCATGCAAAGATACATCCAGATGTGTAGCAGAGAAGAAGTACACCGAGCAGCAGGCTAAGAAGCTCTTCCCGCAGGTCTTTGTGCCTGTATGCAACCCTGATGGCACATATAGTGAGGTTCAGTGCCACAGTTACACTGGATACTGTTGGTGTGTCACCCCCAATGGCCGACCCATTAGTGGCTCAGCTGTGGCCAATAAAAAACCTCGATGCCAAGGTTCAAAACAAGAGCGAGCTACTACAAGAGAGCCAGATGAGACTGGCCTAGTGGTGGATCCACAGCCTGCTGGCGATGAAGAAGACATCATTTCCCAGTACCCCACTCTGTGGACGGAGCAGGTTCGCAGCCGACAGAACAATAGAACCAGAGCACCATCCTCATCCTGTGACCAGGAGCAGCAGTCTGCCCAGGAAGAGGCGAAGCAGCACAAGAACGATGCTGTATTCGTACCAGACTGTGCCCATGGAGGACTGTACAAGCCAGTCCAATGCCACCCCTCCACCGGCTACTGCTGGTGTGTGCTGGTGGACACGGGACGGCCCATACCTGGGACTTCCACCAGGTGGGAGAGACCGCACCTATGGTATGAACAGCCAAAGTGCGATGGCAATGCCAGGGCCCACCCGACTAAACCTAAGGACCATTATAGAAGCAGACATCTCCAGGGCTGTCCCGGGGCAAAGAAAACAGAGTTTCTGACAAGTGTTCTTGACGCGCTGTCAACAGACATGGTGCACGCCGTCACAGATCCAGCATCCGCCGGAAGGATGGCCGAGCCCGACCCCAGCCACACCCTGGAGGAGAGGGTGGTCCACTGGTATTTTAGTCAGCTGGACAAAAACTCCAGCGGGGACATTGGAAAGAAGGAGATCAAGCCTTTCAAACGCTTTCTGCGCAAGAAATCAAAGCCAAAGAAGTGTGTGAAGAAGTTTGTGGAGTACTGCGACATTAGCAACGACAAGGCGCTGTCTCTGCAGGAGCTGATGGGTTGCCTCGGGGTGACCAAAGAAGAGGGGGCCAAACCAGTAGAGGGTTTATCTTCCAGTAAACTAAATCCCTCGAAGAAGCAAGGCTAAGCCAGCATCTGAGATTTCCCCTCCCGCAAGGAGAATCTGCCCTTACCAGTCGGCAATAATGGAAACCATAGTATTTGCACtttgtactttaaaaaaaaaaaa
>XM_039783130.1
cacgggggggggggggaatcgaaCTGCCAGAATTAAGGAGAGTGTCTACACCAACGGTTTGGCAGACGAAACCAAGGAGACGAAGTGAAATAAACCAGCAACCACGTCTCTCCAACACTCCAACATTTTTTTCGCAAGGACTACTGTGGATTTTTAAACCTTTTCGACTTCTCCCAAAGACAATTTTTGTGCTTTGGTGAAGTCCAGGCAACACAGAGTAACATTTGGACGTGCGTAATTTGGAGAGTTTATTGCCACACGGCGTCAGGATGCGCGTATGTCCGCTGCTGGTCTTCCTCTGTCTGCTGTGCGCTGGACGCGCTCAAAAGTTCTCTGCTCTCACGTTCCTGCGGGTGGATCAGGATAAGGAGTGCAACATGGAATGCACAGGAGCTCCCCGCAAGCCCCTGTGCGCCTCCGACGGCCGGACCTTCACATCTCGCTGCGAGTTCCTCCGAGCCAAGTGCCGTGACCCCCAGCTGGAGGTCATTCGAGGGCCATGCAAAGATACATCCAGATGTGTAGCAGAGAAGAAGTACACCGAGCAGCAGGCTAAGAAGCTCTTCCCGCAGGTCTTTGTGCCTGTATGCAACCCTGATGGCACATATAGTGAGGTTCAGTGCCACAGTTACACTGGATACTGTTGGTGTGTCACCCCCAATGGCCGACCCATTAGTGGCTCAGCTGTGGCCAATAAAAAACCTCGATGCCAAGGTTCAAAACAAGAGCGAGCTACTACAAGAGAGCCAGGTAAAGCAGATGAGACTGGCCTAGTGGTGGATCCACAGCCTGCTGGCGATGAAGAAGACATCATTTCCCAGTACCCCACTCTGTGGACGGAGCAGGTTCGCAGCCGACAGAACAATAGAACCAGAGCACCATCCTCATCCTGTGACCAGGAGCAGCAGTCTGCCCAGGAAGAGGCGAAGCAGCACAAGAACGATGCTGTATTCGTACCAGACTGTGCCCATGGAGGACTGTACAAGCCAGTCCAATGCCACCCCTCCACCGGCTACTGCTGGTGTGTGCTGGTGGACACGGGACGGCCCATACCTGGGACTTCCACCAGGTATGAACAGCCAAAGTGCGATGGCAATGCCAGGGCCCACCCGACTAAACCTAAGGACCATTATAGAAGCAGACATCTCCAGGGCTGTCCCGGGGCAAAGAAAACAGAGTTTCTGACAAGTGTTCTTGACGCGCTGTCAACAGACATGGTGCACGCCGTCACAGATCCAGCATCCGCCGGAAGGATGGCCGAGCCCGACCCCAGCCACACCCTGGAGGAGAGGGTGGTCCACTGGTATTTTAGTCAGCTGGACAAAAACTCCAGCGGGGACATTGGAAAGAAGGAGATCAAGCCTTTCAAACGCTTTCTGCGCAAGAAATCAAAGCCAAAGAAGTGTGTGAAGAAGTTTGTGGAGTACTGCGACATTAGCAACGACAAGGCGCTGTCTCTGCAGGAGCTGATGGGTTGCCTCGGGGTGACCAAAGAAGAGGGGGCCAAACCAGTAGAGGGTTTATCTTCCAGTAAACTAAATCCCTCGAAGAAGCAAGGCTAAGCCAGCATCTGAGATTTCCCCTCCCGCAAGGAGAATCTGCCCTTACCAGTCGGCAATAATGGAAACCATAGTATTTGCACtttgtactttaaaaaaaaaaaa

Function

symbol description
smoc2 Predicted to enable calcium ion binding activity. Acts upstream of or within animal organ development and regulation of BMP signaling pathway. Predicted to be located in collagen-containing extracellular matrix and extracellular region. Is expressed in several structures, including digestive system; ectoderm; nervous system; notochord; and optic vesicle. Orthologous to human SMOC2 (SPARC related modular calcium binding 2).

NR:

description
SPARC-related modular calcium-binding protein 2 isoform X1

GO: NA

KEGG:

id description
K24354 SMOC; SPARC-related modular calcium-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039783126.1 True 1719 mRNA 0.53 13 24954712 24976820
XM_039783127.1 False 1697 mRNA 0.53 13 24954713 24976820
XM_039783128.1 False 1686 mRNA 0.53 13 24954712 24976820
XM_039783129.1 False 1677 mRNA 0.53 13 24954712 24976820
XM_039783130.1 False 1664 mRNA 0.53 13 24954713 24976820

Neighbor

gene id symbol gene type direction distance location
cdh23 cdh23 coding upstream 10293 24867260 ~ 24944419 (+)
LOC120548496 cdh23,LOC107989583 coding upstream 113965 24742926 ~ 24840747 (+)
fgfr2 fgfr2,LOC102787384 coding upstream 460309 24454868 ~ 24494403 (+)
habp2 NA coding upstream 614528 24336122 ~ 24340184 (+)
LOC120548489 LOC101469311,LOC104948545,LOC103376395,LOC102786201,LOC102303134 coding upstream 618690 24331872 ~ 24336022 (+)
lrrfip2 lrrfip2,LOC102790484,LOC103477154 coding downstream 56652 25033472 ~ 25054947 (+)
fam83ha NA coding downstream 98394 25075214 ~ 25084770 (+)
LOC120547833 LOC103359796,LOC104940887,LOC102792006,LOC107088245,LOC101481961 coding downstream 109094 25085914 ~ 25089070 (+)
herc4 herc4 coding downstream 115066 25091886 ~ 25108080 (+)
sirt1 sirt1 coding downstream 154633 25131453 ~ 25138549 (+)
G196485 eif3l non-coding upstream 5680 24947838 ~ 24949032 (+)
G196481 NA non-coding upstream 41244 24873802 ~ 24913468 (+)
G196476 NA non-coding upstream 107022 24847114 ~ 24847690 (+)
G196475 NA non-coding upstream 110860 24843443 ~ 24843852 (+)
G196457 NA non-coding upstream 312655 24640699 ~ 24642057 (+)
LOC120547601 NA non-coding downstream 134575 25111395 ~ 25119124 (+)
G196558 NA non-coding downstream 201339 25178159 ~ 25181813 (+)
G196563 NA non-coding downstream 212610 25189430 ~ 25189679 (+)
G196595 mcmbp non-coding downstream 242727 25219547 ~ 25219914 (+)
G196648 pdlim1 non-coding downstream 341446 25318266 ~ 25320869 (+)
G196439 wdr11 other upstream 385545 24564550 ~ 24569167 (+)
LOC120548495 ate1 other upstream 528210 24367954 ~ 24426502 (+)
LOC120547848 LOC103369904,LOC106907288,LOC107081732 other upstream 587113 24357926 ~ 24367599 (+)
klhdc3 klhdc3 other upstream 1103107 23818914 ~ 23851605 (+)
disc1 disc1 other upstream 1343375 23562283 ~ 23611337 (+)
dact2 dact2,LOC103391347 other downstream 31654 25008474 ~ 25013249 (+)
cacul1 cacul1,LOC103374658,LOC102794354 other downstream 162227 25139047 ~ 25144254 (+)
LOC120548229 rab11fip2 other downstream 505011 25481831 ~ 25495505 (+)
zgc:110045 LOC102779765,LOC102305383,LOC100704767,LOC101482925,LOC102197868 other downstream 617676 25594496 ~ 25674906 (+)
prdx3 prdx3 other downstream 636587 25613407 ~ 25620675 (+)

Expression


Co-expression Network