abcg8 (abcg8)


Basic Information

Item Value
gene id abcg8
gene name abcg8
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 11495070 ~ 11507706 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039783268.1
TGAGAGAGAAGGCTTGTGAGCTGAGACAAGAGGAGGTCTTCAGCTGGACTGGAGTCAAACTATATAACAAAGAGAAGACACGGAGAACAGGGGAACAACAGGAGAGAAACAAAGGCTAAGACTcgtagagagaaaaagagagaaactgaacagaaggagaaagagggggTGTTAACCTCTTGACCCTACAAACATCAACCAGCATTTGGTATCATCATGGACACAGACACCAGCCTCAACCGTGCAAACAGCTCTTTACAGCATCCAGACATCGAGTTGTTCTCGTCTGAAGAAGACAGCAGTCTCTACTTCACCTACAGTGGAGGTTGCAATGAGCTGGAGGTCAACAACCTGCATTATGAGGTTGACACAGCGGCTCAGATCCCCTGGTATGAGAGGTTATCAGAGTTCAAGTTGCCGTGGGAGATAAACGGAAACAAGCAGATAGCCATCAACAGCCTCAGCCTCCGAGTCCACAGCGGGCAGATGCTGGCCGTCATTGGCAGCTCAgGTTGTGGTAAAACATCTTTGCTGGACATAATAACATGCCGTGACGAGGGCGGTACAATGACGTCCGGTCAGGTTCTGATTAACGGGAAGCCAAACACGCCCCAGCTGGTGAAGAAGAGCATCGCTCATGTCCGCCAAGATGACCGCCTTCTTCCTCACCTCACCGTCCGTGAAACCCTTGTCTTTGTTGCCAAACTGAGGCTCCCCACCCACTTCACACAGGCTCAGAGGGACCAGAGGGTGGATGATGTCATCGCAGAGCTGCGGCTGCGACAGTGTGCTCACACCAGAGTGGGAAACAACTATGTGAGGGGTGTttctggaggagagaggaggagagtcaGTATAGCTGTCCAACTTCTTTGGAACCCCGgCATTTTGATCCTGGACGAGCCCACGTCAGGTTTGGACAGCTTTACAGCCCACAACCTGGTGATCACACTATCTCGCCTGGCCAGGGGAAACCGTCTGGTCCTACTGTCGGTCCACCAGCCTCGGTCAGATATCTTTCAGCTCTTTGACCTCGTCGTCCTGCTGTCGTCAGGTTCAGCTGTTTACTGTGGCGCTGCTCGTGACATGGTGCCTTACTTCACTGCCCTGGGATACCCCTGCCCACGATACTGCAACCCCTCTGACTTCTatgttgACCTGATCAGTATAGACCGGCGTAGTCCGGAGCGAGAGGCCGAGTGTTTGGAGCGGTCCAGAGTTCTGGCTGAGCAGTTAATGGAAAAGGTCCGAGACACAGGCGATCACATGTGGAAATCAGCTGGGACAAACACAGCACTGACACAAACTGAAAGCCCTCAGCAGCTGAGCAAAGTAATCACCATTTCCAATCAAAAAAACAGACTGCCTGGCAGACTACACCAGTTTACGACCCTCATCAGGCGTCACATGTATAATGACTTCAGAGACCTGGTCACCTTATTGGTCCACGGCTTCGAGGCCCTCCTCATGTCACTGCTGGTCGGTTTTCTCTACTACGGGGCAGGAGAAGAGCGTCTGTCCATTCAGGACACAGTGGCCCTCCTCTACATGATCGGAGCTCTCACCCCATTCGCTGTGGTGCTGGACGTCATAGCTAAATGTCACACAGAGAGAGCCATGCTCTACCACGAGCTGGAGGACGGCATGTACTCTGTCACCTCCTACTTCTTTGCCAAGGTCCTGGGAGAGTTACCAGAGCACTGCGTGTTCACCCTGGTGTACGGCCTGCCCATCTATTGGCTGGCCGGTCTTAACGAGGCTCCGGAACGTTTCCTGCTAAACGTCCTGCTGGTGTGGCTGATGGTTTACTGCAGCCGAGCCATGGCTCTGTTTGTAGCAGCTGCGTTGCCCACCCTGCAGACCTCAGCATTCATGGGCAACGCCTTGTTCACGGTCTTCTACTTGACCGGAGGTTTTGTCATCAGCCTGGAGAATATGTGGCTTGTGGCCTCGTGGCTCTCTCACGCCTCCTTCATGCGTTGGGGTTTTGAGGGCATGCTGCAGGTACAGTTCAGAGGCAACAAGTACCCCGTCACCATTAGAAACATCACCATCCAGGTTGACGGCATACACGTGGTGGAGGCCATGAACATGAACCAGTACCCTCTGTACTCGTGCTATCTGGTCCTGCTGGCAGTCTGTCTGGTCTTCATGGCGCTCTATTATGTGTCCCTAAAATTCATCAAACAGAAGTCCAGTCAGGACTGGTGAACACATCTGGACCATTTCCAACAATCAGACCAAACGCTGTCTGATATCACCCACACATCAGTCAGGTTTTCAACTTtaggaagtgtttttttttgcagcagcagcagtggaacGAAGTGGGTTCTAGTTTGACTGGTTTGACAATCTAGCCAtgctttccattgttattcTGCTGTTCTTATTAGGATgtttaacagtaaaaaaaaaagtgcttcaTTTAGGGGAGAAAAACACAATGTATGTTTTGAATTGACCTTTTCACAATAATCTCAAAATCAGAAACTCCTGCACTCCACACTTTAATGGTATAAATGTGAAATAACCCTTCTCCTAAAGTCACCCTTCTTGATGTCTAAAATAATTCCTAAAAGTGCAGCAATTTCTCCCATCTTTGACTAGTCAATAAATCTCAACATATACCTAACAGTTTAAAGATGGGAATATTTGGAATTTGGGTAAGAAAATAAGTTTTGGAGGAGCACTTGTTGCAGTACTGCTGTCTGCTGCTGGATGGCAGCATAGCACTGCACTAACATCAAAGTTAAAATGATaaatttctttctctccctctcttctctgtctTGGCAAATGATTAGAGCGCCACTTTGGCAGATACCCATCTACAGCTTTTGCTTGTTCCATTTTcaatcttctttttttctacagctttatctttttttctataTGTAAGGTTATTAAGCTTAACAATGTGTGTGCCAGTATAGGGAgcactggagaaaaaaaaaagcctagtAGAGATTTAGTAAATCACACTCAGAAAAAAAGAGCTTGTACTTGTGTCCTCATAGATTGAAGATTATGTAACCAGTGTGTTTTTGCACTGGTGCAAAAGCCTGATATAAATATTTTACTGACGTGGTATGAGTCCAAATTAGTAAAGTATTAAGTAAAGCTGCTCCACTtgagcatgttttatttttgtcttcatACTCTCTCTGCTATCCTTTGACCTGATTATACAGTTCAATGGCGTTTTATTTCAGCACCACACAAAACCCTTAGAAATGGTTCTTCATGTAAAATCATTAAGGAAATATTTGGTGCATGTaacaccataaaaaaaaaaaaa

Function

symbol description
abcg8 Predicted to enable ATP binding activity and ATPase-coupled transmembrane transporter activity. Predicted to be involved in cholesterol homeostasis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in arteriosclerosis; familial hyperlipidemia; gallbladder disease; obesity; and sitosterolemia. Orthologous to human ABCG8 (ATP binding cassette subfamily G member 8).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG:

id description
K05684 ABCG8; ATP-binding cassette, subfamily G (WHITE), member 8 (sterolin 2)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039783268.1 True 3301 mRNA 0.47 13 11495070 11507706

Neighbor

gene id symbol gene type direction distance location
ppm1ba ppm1b coding downstream 94553 11380833 ~ 11400517 (-)
slc3a1 slc3a1 coding downstream 117532 11367724 ~ 11377538 (-)
six3a six3,LOC104943435 coding downstream 355644 11135612 ~ 11139426 (-)
cfap36 cfap36 coding downstream 608428 10873872 ~ 10886642 (-)
LOC120548092 NA coding downstream 654482 10773396 ~ 10840588 (-)
dync2li1 dync2li1 coding upstream 11195 11518901 ~ 11524138 (-)
cep170aa cep170 coding upstream 22884 11530590 ~ 11572618 (-)
arid5b arid5b coding upstream 76865 11584571 ~ 11658103 (-)
akt3a akt3,LOC108244154,LOC107099926,LOC104931217,LOC100691860,LOC105927955 coding upstream 261690 11769396 ~ 11834070 (-)
atl2 LOC103370707 coding upstream 481661 11989367 ~ 12007678 (-)
G193117 NA non-coding downstream 56659 11437887 ~ 11438411 (-)
G193005 NA non-coding downstream 341102 11153711 ~ 11153968 (-)
G192988 NA non-coding downstream 476145 11018123 ~ 11018925 (-)
G192952 NA non-coding downstream 622629 10860173 ~ 10872441 (-)
G192929 NA non-coding downstream 727029 10767029 ~ 10768041 (-)
LOC120547711 NA non-coding upstream 489 11508195 ~ 11508933 (-)
G193148 NA non-coding upstream 74552 11582258 ~ 11584160 (-)
G193149 NA non-coding upstream 92073 11599779 ~ 11607814 (-)
G193191 NA non-coding upstream 207467 11715173 ~ 11715859 (-)
G193201 NA non-coding upstream 255957 11763663 ~ 11808556 (-)
camkmt camkmt other downstream 137398 11236314 ~ 11357672 (-)
LOC120548461 NA other downstream 532180 10956572 ~ 10962890 (-)
LOC120548128 LOC103374855 other downstream 541047 10890469 ~ 10954023 (-)
hhat hhat other downstream 839360 10633244 ~ 10655710 (-)
nphp1 NA other downstream 1311868 10168452 ~ 10183202 (-)
lyrm7 lyrm7 other upstream 17200 11524906 ~ 11527284 (-)
adss2 adss,LOC107098117,LOC107375820 other upstream 380386 11888092 ~ 11918814 (-)
phactr2 phactr2 other upstream 789783 12297489 ~ 12348599 (-)
G193427 dnajc9 other upstream 1439989 12947695 ~ 12948609 (-)
mzt1 mzt1 other upstream 2198019 13705725 ~ 13707932 (-)

Expression


Co-expression Network