dync2li1 (dync2li1)


Basic Information

Item Value
gene id dync2li1
gene name dync2li1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 11518901 ~ 11524138 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039783270.1
AAAGTGTGCCGTTACTCTGGCAACGTTTGGTTTCTTTTGGTTGTAGCCGTTTAGCTGGCCTGTGAAGTTGTCAAAgattgtaaaacatattcaatTTAATGCCAAAAATAAGTTCAGACACGCTATGGGAGCAAGCTGCGGCGGAGGTCCACAGGCGGGAGGCTGAGGGTGGGGGGGAGGACGGAGGAGAGACGGTCAGCGAGAGGACCGTGTTTCTGATGGGGAGCAAGGCCGGGGGTAAAACGTCCATTCTCCTTAGATGCCTCGACAgGGATGAACCATCTAAGCCAACTCTAGCACTGGAGTACACTTTCGGAAGACGGGCCCGAGGACACAACACACCCAAAGACATAGCCCACCTATGGGAGCTAGGAGGAGGGACCTCTTTGTCAGACTTGGTACAGATCCCCATCACTCCTGTCAGCATCAGGTCTCTCTCTGTCATCCTCATTCTGGACCTGTCCAAACCCAACGCCCTGTGGGTAACCATGGAAAAGCTGCTTCAGGCAACACAAGCTCAGTTGGAGAAAGTCTCCTCCCAGGCACAACAAGCACAGAAAGCCAAACCTGGAGCCAAACATCATATGCCTGTCCGCTCAGCAGCACGCGTGTTACCTAAAGACTATCCTGACAGAGAGCTGATCAGTCCCTTTCCTGTTCCTCTGCTCATCATCGGCAGCAAATATGACACCTTTCAGGAATTTGACTCTGACAAGAGGAAAGTGGTTAGTAAAACACTGCGTTTTGTTGCCCACTACTACGCAGCCTCTCTTATTTTCACTAGCATCAAGACAGAAAGCCTAATGTCAAAAACCAAGAGCTTCTTCTCCCACCTGGCCTTCGGTCTGGACAGAGGGAAAAGTGTGTCCTGTGACTCTTCCAAGCCTCTCATTGTTCCAGCAGGCTATGACTCCTTTAGCCAAATAGGTTCCCCTCCTACTACTGATATAGACATTACTACTCTGCATGCTAAAAACCCAAAGGACCTCTGGAAGAAAGTCTACGAGCGTGTCTTCCCCCAAGAGAATACCAGTGAGCAAAGGGAACTAAAGGATCCAGCCAAAGACCCACAGTACAGTGAGCCTCAGATTGATGCCATGAGAGCCCAAAAAGACCAGGAGTTGGATCAGTATAAAAGGGATGCAGCTAAGTCATGGAAAGGACTGGAGCTGGAGACATGAGAAACTGCATTACGgctttcctttatttatttcctttggtgtcattgtgtctttttttaaacaacaaaactacttgtaTACCATACCAATGATAAAATTGTGTTCTAAAAATAAACGATTTAACATTA
>XM_039783272.1
CTCTGGCAACGTTTGGTTTCTTTTGGTTGTAGCCGTTTAGCTGGCCTGTGAAGTTGTCAAAgattgtaaaacatattcaatTTAATGCCAAAAATAAGACACGCTATGGGAGCAAGCTGCGGCGGAGGTCCACAGGCGGGAGGCTGAGGGTGGGGGGGAGGACGGAGGAGAGACGGTCAGCGAGAGGACCGTGTTTCTGATGGGGAGCAAGGCCGGGGGTAAAACGTCCATTCTCCTTAGATGCCTCGACAgGGATGAACCATCTAAGCCAACTCTAGCACTGGAGTACACTTTCGGAAGACGGGCCCGAGGACACAACACACCCAAAGACATAGCCCACCTATGGGAGCTAGGAGGAGGGACCTCTTTGTCAGACTTGGTACAGATCCCCATCACTCCTGTCAGCATCAGGTCTCTCTCTGTCATCCTCATTCTGGACCTGTCCAAACCCAACGCCCTGTGGGTAACCATGGAAAAGCTGCTTCAGGCAACACAAGCTCAGTTGGAGAAAGTCTCCTCCCAGGCACAACAAGCACAGAAAGCCAAACCTGGAGCCAAACATCATATGCCTGTCCGCTCAGCAGCACGCGTGTTACCTAAAGACTATCCTGACAGAGAGCTGATCAGTCCCTTTCCTGTTCCTCTGCTCATCATCGGCAGCAAATATGACACCTTTCAGGAATTTGACTCTGACAAGAGGAAAGTGGTTAGTAAAACACTGCGTTTTGTTGCCCACTACTACGCAGCCTCTCTTATTTTCACTAGCATCAAGACAGAAAGCCTAATGTCAAAAACCAAGAGCTTCTTCTCCCACCTGGCCTTCGGTCTGGACAGAGGGAAAAGTGTGTCCTGTGACTCTTCCAAGCCTCTCATTGTTCCAGCAGGCTATGACTCCTTTAGCCAAATAGGTTCCCCTCCTACTACTGATATAGACATTACTACTCTGCATGCTAAAAACCCAAAGGACCTCTGGAAGAAAGTCTACGAGCGTGTCTTCCCCCAAGAGAATACCAGTGAGCAAAGGGAACTAAAGGATCCAGCCAAAGACCCACAGTACAGTGAGCCTCAGATTGATGCCATGAGAGCCCAAAAAGACCAGGAGTTGGATCAGTATAAAAGGGATGCAGCTAAGTCATGGAAAGGACTGGAGCTGGAGACATGAGAAACTGCATTACGgctttcctttatttatttcctttggtgtcattgtgtctttttttaaacaacaaaactacttgtaTACCATACCAATGATAAAATTGTGTTCTAAAAATAAACGATTTAACATTA

Function

symbol description
dync2li1 Predicted to enable dynein heavy chain binding activity. Acts upstream of or within intraciliary transport. Located in non-motile cilium. Is expressed in several structures, including alar plate midbrain region; midbrain; pectoral fin; pectoral fin bud; and pronephric duct. Human ortholog(s) of this gene implicated in asphyxiating thoracic dystrophy. Orthologous to human DYNC2LI1 (dynein cytoplasmic 2 light intermediate chain 1).

NR:

description
cytoplasmic dynein 2 light intermediate chain 1 isoform X2

GO: NA

KEGG:

id description
K10417 DYNC2LI; dynein light intermediate chain 2, cytosolic

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039783270.1 True 1309 mRNA 0.48 13 11518901 11524138
XM_039783272.1 False 1290 mRNA 0.48 13 11518901 11524124

Neighbor

gene id symbol gene type direction distance location
abcg8 abcg8 coding downstream 11195 11495070 ~ 11507706 (-)
ppm1ba ppm1b coding downstream 118384 11380833 ~ 11400517 (-)
slc3a1 slc3a1 coding downstream 141363 11367724 ~ 11377538 (-)
six3a six3,LOC104943435 coding downstream 379475 11135612 ~ 11139426 (-)
cfap36 cfap36 coding downstream 632259 10873872 ~ 10886642 (-)
cep170aa cep170 coding upstream 6452 11530590 ~ 11572618 (-)
arid5b arid5b coding upstream 60433 11584571 ~ 11658103 (-)
akt3a akt3,LOC108244154,LOC107099926,LOC104931217,LOC100691860,LOC105927955 coding upstream 245258 11769396 ~ 11834070 (-)
atl2 LOC103370707 coding upstream 465229 11989367 ~ 12007678 (-)
olig3 olig3 coding upstream 534287 12058425 ~ 12060064 (-)
LOC120547711 NA non-coding downstream 9968 11508195 ~ 11508933 (-)
G193117 NA non-coding downstream 80490 11437887 ~ 11438411 (-)
G193005 NA non-coding downstream 364933 11153711 ~ 11153968 (-)
G192988 NA non-coding downstream 499976 11018123 ~ 11018925 (-)
G192952 NA non-coding downstream 646460 10860173 ~ 10872441 (-)
G193148 NA non-coding upstream 58120 11582258 ~ 11584160 (-)
G193149 NA non-coding upstream 75641 11599779 ~ 11607814 (-)
G193191 NA non-coding upstream 191035 11715173 ~ 11715859 (-)
G193201 NA non-coding upstream 239525 11763663 ~ 11808556 (-)
G193205 NA non-coding upstream 269536 11793674 ~ 11867798 (-)
camkmt camkmt other downstream 161229 11236314 ~ 11357672 (-)
LOC120548461 NA other downstream 556011 10956572 ~ 10962890 (-)
LOC120548128 LOC103374855 other downstream 564878 10890469 ~ 10954023 (-)
hhat hhat other downstream 863191 10633244 ~ 10655710 (-)
nphp1 NA other downstream 1335699 10168452 ~ 10183202 (-)
lyrm7 lyrm7 other upstream 768 11524906 ~ 11527284 (-)
adss2 adss,LOC107098117,LOC107375820 other upstream 363954 11888092 ~ 11918814 (-)
phactr2 phactr2 other upstream 773351 12297489 ~ 12348599 (-)
G193427 dnajc9 other upstream 1423557 12947695 ~ 12948609 (-)
mzt1 mzt1 other upstream 2181587 13705725 ~ 13707932 (-)

Expression


Co-expression Network