LOC120547713 (psap,LOC104957284)


Basic Information

Item Value
gene id LOC120547713
gene name psap,LOC104957284
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 21790970 ~ 21800094 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039783320.1
GACAGTGATAACATCATAAAGGCATCAACAAGCCTCACCGCCTGCATTGCAGTACTCACAACGCTCCAGTGTACTTCACCCACCACCGAGAAACAGACAGACGAGCCGGAAAACAGCGGAGTCATGCTGTTCCTAACTCTACTTTTCGTGTCTTCagCTGTGGCGACCCCTCTGCTGGGCACTGAGCAATGTACCCGAGGCCCCCCCTACTGGTGCCAGAATGTAAAGACGGCGTCTCTGTGCGGAGCTGTGACTCACTGCCAGCAGAACGTCTGGAACAAGCCCCAGATgAAATCAGTGCCATGTGACTTGTGTAAAGAGGTGTTGATGGTGGTGGAGCAGATACTGAAGGACAATGCCACGGAGGCTGAGGTTCTTGGGTACCTGGAGAAGGCCTGCCAGCTCATCCCTGATCAAGGTTTGACTGCAGAGTGCAAGGAGATGGTGGATGACTACTACCCCATCCTCATGGGAATCATTAAAGGAGAACTGgaGGATCCCAGTGTGGTGTGTGGAGCCATGGGGCTGTGTCAGTCTCAGCAGGTAGCCCTGGCTAAGGCTCATGCCCAGGAGCAGCTCATGTCAAATGAAATCCCTCAGATGGACCTCGCCCAGCAAGTGTCTCCTTTCCTCATCAATGTGCCCGAGCTCCTCTATCCTCAGGAGAGCCCCAAGCATGAGGCCCCCAAGCAAGAGACTCCAAAGCAGGAAAGTGATGATGTGTGCCAAGACTGCGTCAAGTTCCTGACTGACGCTCAAGCAGAAGCCAAGACCAACTCCTCGTTCGTCGACTCTCTCATTGAGAACATTGAGAACCAGTGTGACCTGCTGGGGCCAGGCTTGTCTGAAATGTGCAAGCAGTATGTCGGCCAATATGGTACCCTTGTTGTTGAGCAGCTCATGTCCATGGAACAGCAACCCAAGGATATCTGTGTCCTCGCTGGCTTCTGTACTGCTATGAAGAAGTCCATTCCCATGCTGCAGCTGCAGCCTGCCCAGACTGTGCCTGCTGTCCAGACTGTACCTGCTGCCAAGACTGTAGCTGCTCTCAAGCTTTTCCCTGCCACAAAGGTTGAGTCTGCCAAGCCCATGGTGCGTGTCCGTGAGTCCCCAACATGTGCCATCTGTGAGTTTGTGATGAAACAGTTGGAGACTATGTTGGAGGATCAGAAAACAGAGgAGGAGGTGATTCATGCGGTGGAGAAGGTATGCACATATCTGCCCTCTTCTCTAAGTGCCCAGTGTAAGGACCTGATTGAGACCTACGGCCAGGCCATCATTGAGCTGCTGGTGCAACAGACTGACCCAAAGACCGTCTGCACAGTGTTGGCACTCTGCAATGATGCCAGCCGTGCATATGTCCCTGCACTTGACCAGACTCGCTTTAAGGCTGGTGGCTACTGCCAGGTTTGCAAGATGGCCGTCAGCTACATCGATGGCATTCTGGAGAAGAATGCAACTGAGGCACAGATTGAGGAGGCTGTGAGGAAAGTATGCAGCTTCCTGCCCAGCTCTTTCCAGGCCGAATGTGACCAGATGATTGAACAGTATGAGCCAGTGCTCATTCAGCTGCTTCTCCAGATGCTCGACCCAGACTTCGTGTGCATGAAAGTGGGAGCCTGTCCTGAAGCTGTGCGCATGCTGCTGGGAACAGAGCAGTGCAGCTGGGGACCTGCATTCTGGTGCAAGAACATGGAGACAGCAACTCGGTGCAATgCTGTGGCTCACTGCAAACGCCATGTGTGGGTATAGAGGAAGAGAAAGGACAAACTGTTCTGTAGGGaattaaaagataaaaatacTGTAGTGCTGCTTCCCACTTTTAATTTgtgtcctgtttttttctttttttaatggacTTAAATGTCTGCAGTTTAAATTAACTTGGATATTTTGAATGAGGTCATGGTGGAAAGGGACtggacatttagttttttttttttcggggggGTGGGGCAGGGGAGGAGTAATGAGGTGGATAGTGGTCTTACTGCTTCACTGAGCAGGAGTCCCAAAGCTTCACTTTTGGGATTTGTGTATAATTTGCATTGTACTTACCTATGTTGCTTTCTGGGTGTggtctatgtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacacaaattcaaGTTTCACATATTAATGTTGACACAGCATCAGATGGCTGCTGTTTtgacgcccccccccccactacatttgtttttgatttCTTCTCCCTGGAGGAACTGATTGCAAATGGGATAGACCACTCTGTGTGTTAAGAATGACAATTACTTTTAGCAGTATGTCTGATCCTTAAacaaatgtatattttgtagagaaaatgtgtgttcttgtgttaaGGAGCTGATATTGAGGTCATTGGTCTGAGTGTACGTCCCCACTCCTCTCCTAATTGTTTGCGCTCTTCCTGTTTGTAAATCACGGTTTCTAACATACAGAGGGCATCTCTAATATGATTGTTGTCTGCCTCAAGCCCTGAGCCACCTGTCAGTTGATCTGTCAATTTTAACAATTAAAGTGGCCCCAATCCA
>XM_039783321.1
ATGCTGTTCCTAACTCTACTTTTCGTGTCTTCagCTGTGGCGACCCCTCTGCTGGGCACTGAGCAATGTACCCGAGGCCCCCCCTACTGGTGCCAGAATGTAAAGACGGCGTCTCTGTGCGGAGCTGTGACTCACTGCCAGCAGAACGTCTGGAACAAGCCCCAGATgAAATCAGTGCCATGTGACTTGTGTAAAGAGGTGTTGATGGTGGTGGAGCAGATACTGAAGGACAATGCCACGGAGGCTGAGGTTCTTGGGTACCTGGAGAAGGCCTGCCAGCTCATCCCTGATCAAGGTTTGACTGCAGAGTGCAAGGAGATGGTGGATGACTACTACCCCATCCTCATGGGAATCATTAAAGGAGAACTGgaGGATCCCAGTGTGGTGTGTGGAGCCATGGGGCTGTGTCAGTCTCAGCAGGTAGCCCTGGCTAAGGCTCATGCCCAGGAGCAGCTCATGTCAAATGAAATCCCTCAGATGGACCTCGCCCAGCAAGTGTCTCCTTTCCTCATCAATGTGCCCGAGCTCCTCTATCCTCAGGAGAGCCCCAAGCATGAGGCCCCCAAGCAAGAGACTCCAAAGCAGGAAAGTGATGATGTGTGCCAAGACTGCGTCAAGTTCCTGACTGACGCTCAAGCAGAAGCCAAGACCAACTCCTCGTTCGTCGACTCTCTCATTGAGAACATTGAGAACCAGTGTGACCTGCTGGGGCCAGGCTTGTCTGAAATGTGCAAGCAGTATGTCGGCCAATATGGTACCCTTGTTGTTGAGCAGCTCATGTCCATGCAACCCAAGGATATCTGTGTCCTCGCTGGCTTCTGTACTGCTATGAAGAAGTCCATTCCCATGCTGCAGCTGCAGCCTGCCCAGACTGTGCCTGCTGTCCAGACTGTACCTGCTGCCAAGACTGTAGCTGCTCTCAAGCTTTTCCCTGCCACAAAGGTTGAGTCTGCCAAGCCCATGGTGCGTGTCCGTGAGTCCCCAACATGTGCCATCTGTGAGTTTGTGATGAAACAGTTGGAGACTATGTTGGAGGATCAGAAAACAGAGgAGGAGGTGATTCATGCGGTGGAGAAGGTATGCACATATCTGCCCTCTTCTCTAAGTGCCCAGTGTAAGGACCTGATTGAGACCTACGGCCAGGCCATCATTGAGCTGCTGGTGCAACAGACTGACCCAAAGACCGTCTGCACAGTGTTGGCACTCTGCAATGATGCCAGCCGTGCATATGTCCCTGCACTTGACCAGACTCGCTTTAAGGCTGGTGGCTACTGCCAGGTTTGCAAGATGGCCGTCAGCTACATCGATGGCATTCTGGAGAAGAATGCAACTGAGGCACAGATTGAGGAGGCTGTGAGGAAAGTATGCAGCTTCCTGCCCAGCTCTTTCCAGGCCGAATGTGACCAGATGATTGAACAGTATGAGCCAGTGCTCATTCAGCTGCTTCTCCAGATGCTCGACCCAGACTTCGTGTGCATGAAAGTGGGAGCCTGTCCTGAAGCTGTGCGCATGCTGCTGGGAACAGAGCAGTGCAGCTGGGGACCTGCATTCTGGTGCAAGAACATGGAGACAGCAACTCGGTGCAATgCTGTGGCTCACTGCAAACGCCATGTGTGGGTATAGAGGAAGAGAAAGGACAAACTGTTCTGTAGGGaattaaaagataaaaatacTGTAGTGCTGCTTCCCACTTTTAATTTgtgtcctgtttttttctttttttaatggacTTAAATGTCTGCAGTTTAAATTAACTTGGATATTTTGAATGAGGTCATGGTGGAAAGGGACtggacatttagttttttttttttcggggggGTGGGGCAGGGGAGGAGTAATGAGGTGGATAGTGGTCTTACTGCTTCACTGAGCAGGAGTCCCAAAGCTTCACTTTTGGGATTTGTGTATAATTTGCATTGTACTTACCTATGTTGCTTTCTGGGTGTggtctatgtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacacaaattcaaGTTTCACATATTAATGTTGACACAGCATCAGATGGCTGCTGTTTtgacgcccccccccccactacatttgtttttgatttCTTCTCCCTGGAGGAACTGATTGCAAATGGGATAGACCACTCTGTGTGTTAAGAATGACAATTACTTTTAGCAGTATGTCTGATCCTTAAacaaatgtatattttgtagagaaaatgtgtgttcttgtgttaaGGAGCTGATATTGAGGTCATTGGTCTGAGTGTACGTCCCCACTCCTCTCCTAATTGTTTGCGCTCTTCCTGTTTGTAAATCACGGTTTCTAACATACAGAGGGCATCTCTAATATGATTGTTGTCTGCCTCAAGCCCTGAGCCACCTGTCAGTTGATCTGTCAATTTTAACAATTAAAGTGGCCCCAATCCA

Function

symbol description
psap Predicted to be involved in adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway and regulation of lipid metabolic process. Predicted to act upstream of or within sphingolipid metabolic process. Predicted to be located in extracellular region and lysosome. Predicted to be active in extracellular space. Is expressed in blood; extension; peripheral olfactory organ; pleuroperitoneal region; and yolk syncytial layer. Human ortholog(s) of this gene implicated in atypical Gaucher's disease due to saposin c deficiency and combined saposin deficiency. Orthologous to several human genes including PSAP (prosaposin).

NR:

description
PREDICTED: prosaposin isoform X1

GO:

id name namespace
GO:0006665 sphingolipid metabolic process biological_process
GO:0005764 lysosome cellular_component

KEGG:

id description
K12382 PSAP, SGP1; saposin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039783320.1 True 2533 mRNA 0.49 15 21790970 21800094
XM_039783321.1 False 2404 mRNA 0.49 14 21791093 21800094

Neighbor

gene id symbol gene type direction distance location
mrps6 mrps6,LOC102780815 coding upstream 2065 21787187 ~ 21788905 (+)
micu1 micu1 coding upstream 16095 21739841 ~ 21774875 (+)
pla2g12b NA coding upstream 137843 21649893 ~ 21653127 (+)
LOC120548353 NA coding upstream 144865 21639718 ~ 21646105 (+)
pde10a pde10a coding upstream 153863 21576456 ~ 21637107 (+)
LOC120548288 NA coding downstream 225864 22025958 ~ 22033229 (+)
mrpl14 mrpl14,LOC102799944 coding downstream 270787 22070881 ~ 22072916 (+)
LOC120547561 LOC103358480,LOC103387545,LOC101064754,LOC103134145,LOC108234077,LOC106959257 coding downstream 288013 22088107 ~ 22094223 (+)
cfl1l NA coding downstream 299212 22099306 ~ 22101867 (+)
mgme1 mgme1,LOC102788050 coding downstream 331027 22131121 ~ 22133520 (+)
G195687 NA non-coding upstream 9531 21779247 ~ 21781439 (+)
G195685 NA non-coding upstream 11894 21731052 ~ 21779076 (+)
G195679 NA non-coding upstream 119495 21667615 ~ 21671475 (+)
G195650 NA non-coding upstream 243054 21546446 ~ 21547916 (+)
G195654 NA non-coding upstream 274529 21515758 ~ 21516441 (+)
G195711 tacc2,LOC104945673,LOC102313393 non-coding downstream 165591 21965685 ~ 22049812 (+)
G195749 NA non-coding downstream 252437 22052531 ~ 22056793 (+)
G195757 capn11,LOC103387546 non-coding downstream 281035 22081129 ~ 22083740 (+)
G195771 snx5 non-coding downstream 325456 22125550 ~ 22126288 (+)
G195783 NA non-coding downstream 342131 22142225 ~ 22144422 (+)
G195653 LOC102296834 other upstream 275842 21514526 ~ 21515128 (+)
fbxo11a fbxo11,LOC104951339 other upstream 458393 21318610 ~ 21332577 (+)
G195518 NA other upstream 1037161 20752773 ~ 20753809 (+)
G195448 thbs2 other upstream 1260655 20529767 ~ 20530315 (+)
adgrb3 adgrb3 other upstream 1634022 20041774 ~ 20156948 (+)
kif16bb NA other downstream 355308 22155402 ~ 22184492 (+)
tasp1 tasp1 other downstream 847820 22647914 ~ 22692604 (+)
disc1 disc1 other downstream 1762189 23562283 ~ 23611337 (+)
klhdc3 klhdc3 other downstream 2018820 23818914 ~ 23851605 (+)
LOC120547848 LOC103369904,LOC106907288,LOC107081732 other downstream 2557832 24357926 ~ 24367599 (+)

Expression


Co-expression Network