LOC120547721 (LOC103357097)


Basic Information

Item Value
gene id LOC120547721
gene name LOC103357097
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 29628731 ~ 29632761 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039783338.1
TTCAGTACTCTTTTCAGGGCAAGGACAGAGAGTAACAGCAATCCGCTGACTGTGGCTTCTTAAACCGAAAAGATCCTTGTACGAGACTTGCACTTATTATTCTGAAGTTAATAACCACCTTAAACGAGATAAGGGGTTTGTCTTCTGTCCTGACTGACCCATTTGGACCCCGTCAGGACCAACAACtggttttgcctttttcaaCTCTGCAGATCATACAAAGTTCACAGCCAGCCTCTTCCCCCACCACACCTCATCACGATGCCTCATCGCCTCTGCTCTGTTGAGATTATAAACAACTCTGCCACCTACACTCTCGCCAACCCAAGGGTGTTCACTGAGAGCGGCCACTGTGAGGTCCCTCTGCCACCGATGGTGGGTCCCTACTCCCCTGCCAGCGCATTGTTCAATAAGCACATGGGCAGTGCGACCGGGGCTGTCGGCGTCTTCACCTATGACCTTTTCAACCCCAACCTCAACGACTACAGCCACGTCGTGGCCGTCATGTTCTCCGTGCCCTACGACCGAAACATCTACTCCAACCGGTTTGCTGTGGGGATCCTTGACAGAGGATACAACTGCGACTACGATCTttatgatatgatgtataatgGATATGAAAATAATTTTGCAAGAGCAATTGCTGATGGCTCCTGCATTTCTTATCAGGGTGATTATGCTATTGTCAGTGCTTCCATGTCAGACTCAGGTGAAGCAGTCCTGAGGGTGGATATCAGTGACGTTGGCATGTATTAAGTCAGAAGGAGGAAGATCCTACTCTTGTTATGTAAGCCCTATGAGCTGATCagtcattttaataaaatatattaggTATGTGTGAAGCTCAATCAACTGACACAGTTCGTCACTAGCTGAAGTGGTGTTCATTAATGTACCTAAAATATGAGTACATTAAATAGTAGTTATTTCAGGTGTGATTTTAAAACCCTGATGCctaattacaaataaaaaacaagacTTGTATGTGTCCA

Function

NR:

description
PREDICTED: cytolysin RTX-S-2-like

GO:

id name namespace
GO:0009987 cellular process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039783338.1 True 992 mRNA 0.45 3 29628731 29632761

Neighbor

gene id symbol gene type direction distance location
LOC120547808 NA coding upstream 70396 29557263 ~ 29558335 (+)
LOC120547961 LOC103372209,LOC104933668 coding upstream 774508 28817833 ~ 28854223 (+)
si:dkey-187a12.4 LOC104933667,LOC104950525 coding upstream 827355 28790784 ~ 28801376 (+)
LOC120548038 tuba1c,LOC108255233,LOC103148207,LOC108247626,LOC106920718,LOC101079871,LOC101066234 coding upstream 838826 28787046 ~ 28789905 (+)
LOC120547521 nanp coding upstream 858652 28764397 ~ 28770079 (+)
LOC120548236 LOC103357099,LOC103387711 coding downstream 13962 29646723 ~ 29655051 (+)
pcca pcca coding downstream 26651 29659412 ~ 29698143 (+)
cdt1 NA coding downstream 323959 29956720 ~ 29963090 (+)
nvl NA coding downstream 635027 30267788 ~ 30336160 (+)
sertad2b sertad2,LOC104932742 coding downstream 873293 30506054 ~ 30600609 (+)
G197571 NA non-coding upstream 157775 29470012 ~ 29470956 (+)
G197568 NA non-coding upstream 170295 29457418 ~ 29458436 (+)
G197532 NA non-coding upstream 218744 29351706 ~ 29409987 (+)
G197530 NA non-coding upstream 246125 29332515 ~ 29382606 (+)
G197635 NA non-coding downstream 71326 29704087 ~ 29705013 (+)
G197636 NA non-coding downstream 75982 29708743 ~ 29710005 (+)
G197654 NA non-coding downstream 135715 29768476 ~ 29779051 (+)
G197679 NA non-coding downstream 337029 29969790 ~ 29977939 (+)
G197686 NA non-coding downstream 361820 29994581 ~ 30000931 (+)
LOC120547718 LOC102789565,LOC100690068,LOC101471749,LOC103357097 other upstream 9715 29518941 ~ 29619016 (+)
G197531 NA other upstream 278803 29348425 ~ 29349928 (+)
LOC120548242 ccdc85a,LOC104955469,LOC102783086,LOC102310250,LOC102209339,LOC100696856 other upstream 451237 29112688 ~ 29177494 (+)
ccnj ccnj,LOC102785723 other upstream 1326398 28294205 ~ 28302333 (+)
LOC120548047 adgra1,LOC103360772 other upstream 1847690 27554928 ~ 27781041 (+)
LOC120547658 NA other downstream 520750 30153511 ~ 30201820 (+)
G197999 NA other downstream 1601603 31234364 ~ 31234723 (+)
G198185 NA other downstream 3160527 32793288 ~ 32794661 (+)
G198245 rab1a,LOC104962072,LOC102231865 other downstream 3329627 32962388 ~ 32965074 (+)
slc2a15a LOC103367959,LOC104935160,LOC103476520,LOC106961144,LOC103155793 other downstream 3524968 33157729 ~ 33199862 (+)

Expression


Co-expression Network