herc4 (herc4)


Basic Information

Item Value
gene id herc4
gene name herc4
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 25091886 ~ 25108080 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039783534.1
GAGGGATTGGgtagaaattaaaaatatatattaattggCCTTTTATATATTAAATACTGAAAGTGTGCTGGTATGTGCGTTCTTAACAATCGGACAAGCTAGTGAGGAAAACCCTGGAAGACAAAATCATTGTCAGATCTGGCAGATTTGGGAGTGCCAAAGGGAAGGGCTACGATGCTGTGCTGGGGTAATGCTTCCTACGGACAGTTAGGCCTGGGTGGGATTGACGAAGAGATTGTGGTTGAGCCACGAAAATGTGAATTCTTTCACGGGAAGCAAGTGTGCGATGTGGGGTgtggccacagacacacagccttCCTGCTGGAGGATGGGACAGTATACACCTGTGGCTGCAATGACCTAGGACAGCTGGGACATGAGAAGTCCAGAAAGAAACCAGAACAGGTTGTGGCCCTGGATGCACAGATCATACTGGCGGTGTCATGTGGAGAGTCCCATACGCTCGCCCTGAATGACAAAGGGATGGTTTTCTCATGGGGTCAGGGCTCAGATGGGCAGTTGGGCCTTAATAACTTTGAAGAATGTGTTCGTGTGCCTAGaaaCATCAAGAGTTTGTCAGATGTACAAATTGCTCAGGTAGCCTGTGGATATTGGCACTCCCATGCACTTTCAAGAGGGGGCCAAGTCTTCTCTTGGGGCCAGAATCGATATGGACAACTTGGGCTAGGAATAAACGGACAGAGCATTCCCACGCCCCAAATCATTCAGTCTCTGCAGGGCATTCCTTTTGCCCAGATATCGGCAGGCGGTGCTCACAGCTTTGCCCTCACTCTCTCAGGAGCAGTGTTTGGTTGGGGTTGCAATAAGTTTGGTCAGCTGGGTCTCAATGACAGCAATGATCGGTCTTTCCCAGCCCTGCTGAAGTCTCTTAGATCGCAGAGAGTGATTTACATCTCCTGTGGAGAAGATCACACAGCAGCACTGACCAAGGAAGGAGGTGTGTTTACATTTGGAGCAGGAGGATACGGGCAACTCGGACATAACTCTGCAAACCATGAGATCAACCCTAGGAAAGTGTTTGAgctcatgggaaatgtagtcacACAGATTGCATGTGGAAGGCAGCACACGATTGCTTTCACACCCTCCCGTGAGAAGATGGACTCATTTGGGCTCGGTGGTAACGGGCAGCTTGGGACTCGCTCCACTTGCAACAGAAAAAGCCCCGCCCCCGTCAAAGGCCCCTGGGTTTCCTGCAATTCTCCAACAGATACAGACTCGGAGCAGGGCTGTTTTGTCAAGAGGATTTATGCCGGAGGAGACCAGAGCTTTGCTCACTATTGCACTGCCAATAAACTCCAGAACATAGACGACGTGAGGATACAAGATCCCTACAGAAAGATCTGCACCTTGAATGAGGATATTATACACAAGTGGTGCAACCACTCCCCAGGAAGACTGCCACAAGAAATCTCCAATGAGATTGACCTCGTGTTCTCCTCAGCAAGCTGCCTCAATGGATCCTTTCTGTCAATGAGTCATCCAGATCACTACAGTACCAGCAGTAAATGTTCAGGGGTGGATATGAACCAGGCTCGCCTCCTGTTTCACAGACTGGTCCAACAAGATCACCCTGAGATCGCTCAGCAGATTGCTGCCAGTCTGGAGAAGAACCTAATTCCCAGACTAAGCAACTCTCCTCCAGACATTGAAGCCCTGAGACTCTACCTCACTCTCCCCGAATGCCCTCTCTTCAGTGACCGAAATAATTACGTGACCATCGCTATCCCGTTTGCCAAATCACTCCTCAGTCTGAAAGAGGCTCCACTGAAGGTGCTAGGAAACTGGTGGTCTACGTTTGAGCCCCGAGTCTTCCAGCGGCTGGTCGAGTTGTACAAGGGAGTGGTGGTGTATCTGCTTCAGATGCACAAGATGGGCATTCCTTCGGTAGAGCAGAGAAttttcacctgtttcctggaCACGTCCCTCCGACTCCTGGAGATCCTGCACATGGTGAGTGAGAGAGCAGGACACATCATTCAGTACGATAAATTCTACATCCATGAGTTGGATGACCTGATAGACATCCGAAATGACTACGTCACATGGATTCAGAGGCAGATGTACCCAATGGGTCCTGATGGTGGGGTCACTCTGTGCAGGTATCCCTTTGTGTTTGACGCCCAAGCGAAGACCACACTGCTTCACACTGATGCTGTCATACAGATGCAGATGGCAGTGGACCAGGCACAGATGCAAAACTTCAGCTCCATGTTCATGCCAGCGGTGGAATCTGTCAACCCGTGCCTCATCCTCATCGTCCGGAGGGAAAACATTGTTGGAGACACCATGGAAGTCCTCAGGAAGTCCAAGAACGTTGACTACAAGAAACCACTCAAGGTAAAAGCTGTCGGAGAAGAGGCCGTTGATGCAGGAGGCGTGAGAAAGGAGTTCTTCCTCCTGATCATGAAAGAGCTGCTGGATCCAAAATATGGGATGTTTCGTTACTACGAGGAGTCCAGGCTCATCTGGTTTTCAAACAAGACTTTTGAGGACATCGACTTGTTTAACCTGATCGGGATCATCTGCGGCCTGGCCATCTACAACCTCACTATAGTGGAGCTCAACTTCCCTGTGGCGCTTTACAAGAAGCTCCTGAAGAGGAAGCCGACACTGGATGACCTGAAAGAGCTAATGCCAGATGTGGGAAGGAGTCTGCAGCAGTTACTGGACTACACAGAAGATGACTTGGAGGAAGCCTTCTGCTTGAACTTCACAATCACAGAGGAAAACTATGGTGCCACAGAGGTCTTGGAACTGGTACCGAATGGCGAAGACATCAATGTCAATCAGTCAAACAGGCAAGACTTCGTCAATGCATACGTGGACTACGTGTTCAACACATCAGTGGCCCCGCTGTTTGAGTGCTTCTACGCAGGCTTCCACAAGGTGTGCGGTGGGAAGGTTCTAGAGCTGTTCCAGCCAAATGAGCTGCAAGCCATGGTCATTGGCAACACCAACTATGACTGGACGGAGCTCGAAAAGAGCACTGAATACAAAGGGGAGTACTGGGCGGACCATCCCACCATCAGGCTCTTCTGGGAGGTGTTCCACAATCTTCCTTTAGAGAAGAAAAAACAGTTTCTCTTGTTCCTCACAGGAAGTGACCGCATACCCATTTTGGGCATGAAAAGCCTGAAGCTGGTGATCCAGCCAACCGGTGGCGGGGAGCATTACTTACCTGTGGCCCACACCTGCTTCAACCTGCTGGACCTGCCCAAGTACAGGAGTCTGGAAACCCTCCGGGAGAAGCTTCTACAGGCTATAGATCACAACCAAGGCTTTAATCTGGCCTGATGGTCCACAGAAATGCCTAGACTGTTGACGGCAACCACAttaccaaatgttttgtttcacaGTCTGGATTCTGCTGTAAGAACTGAAcactgggtgaaaaaaaaacgaGAAGGCCACATGGCACTAGAACTGATTAAGAGTTGGATGTCTAAACTTACGTCGGTAATCTTGACTTTAATTTTccagctcattttttttttttcagctttttgcCCCTCACAGTATTTGCTCTATTACAAGTCAAATCACATTTGATATGGCTCTTGTAGATGATTTTCTTTGTTTGGATAGGAGGAGTATGATGATGCAAACTACTGGTATATGCAGGGAATGCATACAGCAACGAGAATACCTGTAAAATTCAATGAAATGCAGTAGCACTACCTTTCTGAAGcttataatgtaatgttatgGGGAGATTTTTCTGTTATGTCTAGCTATACTGGTGGTGGGGATATACACACAGTGGCCTCAAAATGGACCAGATTTAAATCAAAACCTTTCAGACAGGGTCTTAACAAAAATGCCACATTTTAAGCTCCATTGTGGTGGTGATGTGGTAGTAGTTGCTGCATGGCTACTGCAGTGAATCATATTGTATTTTACAGGACATACTGATGTTGTGTCCATACCCTGTGCATGAAGTGTCTGAACCCAGACAATGTAAACTAACTCTTTATTTCACATGAGTATGTTGTGAGATTTGTTTCAGAGCAGTTTGCTTTAGATCCAGAGTGGATTTTCTTCGGCTGTCAGCCTTAAAACAATCCACGAATAAAAAAAGTACAGCCACTGAAA

Function

symbol description
herc4 Predicted to enable ubiquitin-protein transferase activity. Orthologous to human HERC4 (HECT and RLD domain containing E3 ubiquitin protein ligase 4).

NR:

description
probable E3 ubiquitin-protein ligase HERC4

GO: NA

KEGG:

id description
K10615 HERC4; E3 ubiquitin-protein ligase HERC4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039783534.1 True 4116 mRNA 0.48 24 25091886 25108080

Neighbor

gene id symbol gene type direction distance location
LOC120547833 LOC103359796,LOC104940887,LOC102792006,LOC107088245,LOC101481961 coding upstream 2816 25085914 ~ 25089070 (+)
fam83ha NA coding upstream 7116 25075214 ~ 25084770 (+)
lrrfip2 lrrfip2,LOC102790484,LOC103477154 coding upstream 36939 25033472 ~ 25054947 (+)
smoc2 smoc2 coding upstream 115066 24954712 ~ 24976820 (+)
cdh23 cdh23 coding upstream 147467 24867260 ~ 24944419 (+)
sirt1 sirt1 coding downstream 23373 25131453 ~ 25138549 (+)
mypn mypn coding downstream 36477 25144557 ~ 25164629 (+)
atoh7 atoh7 coding downstream 59845 25167925 ~ 25169050 (+)
pkd2l1 pkd2l1,LOC104965266,LOC104921890,LOC103371634 coding downstream 63024 25171104 ~ 25177459 (+)
bag3 bag3 coding downstream 83739 25191819 ~ 25197871 (+)
G196485 eif3l non-coding upstream 142854 24947838 ~ 24949032 (+)
G196481 NA non-coding upstream 178418 24873802 ~ 24913468 (+)
G196476 NA non-coding upstream 244196 24847114 ~ 24847690 (+)
G196475 NA non-coding upstream 248034 24843443 ~ 24843852 (+)
G196457 NA non-coding upstream 449829 24640699 ~ 24642057 (+)
LOC120547601 NA non-coding downstream 3315 25111395 ~ 25119124 (+)
G196558 NA non-coding downstream 70079 25178159 ~ 25181813 (+)
G196563 NA non-coding downstream 81350 25189430 ~ 25189679 (+)
G196595 mcmbp non-coding downstream 111467 25219547 ~ 25219914 (+)
G196648 pdlim1 non-coding downstream 210186 25318266 ~ 25320869 (+)
dact2 dact2,LOC103391347 other upstream 78637 25008474 ~ 25013249 (+)
G196439 wdr11 other upstream 522719 24564550 ~ 24569167 (+)
LOC120548495 ate1 other upstream 665384 24367954 ~ 24426502 (+)
LOC120547848 LOC103369904,LOC106907288,LOC107081732 other upstream 724287 24357926 ~ 24367599 (+)
klhdc3 klhdc3 other upstream 1240281 23818914 ~ 23851605 (+)
cacul1 cacul1,LOC103374658,LOC102794354 other downstream 30967 25139047 ~ 25144254 (+)
LOC120548229 rab11fip2 other downstream 373751 25481831 ~ 25495505 (+)
zgc:110045 LOC102779765,LOC102305383,LOC100704767,LOC101482925,LOC102197868 other downstream 486416 25594496 ~ 25674906 (+)
prdx3 prdx3 other downstream 505327 25613407 ~ 25620675 (+)
LOC120548053 LOC103353497,LOC102790632,LOC102299158,LOC102194143,LOC101482614,LOC100706574 other downstream 709171 25817251 ~ 25826429 (+)

Expression


Co-expression Network