tsnax (tsnax)


Basic Information

Item Value
gene id tsnax
gene name tsnax
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 23549140 ~ 23557843 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039783543.1
ATAGCGCAAAAGCCCCGCGAGTTATGAGGACCGCATGGATGCCtgttattaaaaacaataaacacgATTTATTTCGCATCGTAGGGAATTGATACTTTATTCGGTGTCCCTATTCTCGGTCAGAGATGATAACTAGCATGTGTAAACGgagctgttttgtgtgttgacCTAGCTAGATAATCCATGACAGACGTAAAGTATTCTGCCTTGTTACAGTTGGTCGGCAGCACCTTCAGAGGCTAGCTAAATCAGTTCATATACAACCTAACCGAGCTTACAGtagttacatttattaaaagcaGACATTGCAACACTGAAGGCATGAATAGGCGAGAAGGTGAAGGATGTCCCCGGAGAAATGCTGATGCAGTGCAGGACCGTGATGCAAGTGCCAACCCATCCTCACCTGTCATTGCTGCTTTCAAAGTTTTCCAACAGGAGCTTGACACCAAACACGACAAATATGAGCGTCTTGTCAAGATCAGTCGAGACGTCACCATTGAAAGCAAGAGGaccatttttcttttacatagAGTGACCAGTGTACCAAATGCAGAGGATATTCTGAATGAAGCAGATGTGAAACTGGATGCAGTCAGGCAGAAAATCGGTCAAATTGCTGAAGAGCTCAGAGGAGAGGACATCTTTCAGTTTCACAGAGCTTTCACAGCAGGGATCCAGGAGTACGTGGAGGCCGTTTCTTTCCTGCACTATATCCGCCATCGCAGCCTTATCAGCCTGGAGGAGATCAACGCCAGACTGGTGTTCATGAGGACAGAGAAGGTAGAGCCAGAGGGCTCAGCTGAAGCCGTGCAGCCGGGAGGTCAGGTCCTGACCTTCCAGGTGACGCCCTCCGACTACCTGCTCGGCGTGGCCGACCTGACCGGCGAGCTGATGCGGATGTGCATCAGCAGCGTGGGCAACGGCGACATTGACACGCCCTTCCAGCTGAGCCAGTTCCTGCGGCAGATCCACGACGGCTTCTCCTACATCGGGAACACGGGGCCTTACGAGGTGTCCAAGAAGCTGCACACGCTGCGACAGAGCCTGGGCAAAGTGGAGGATGCCTGCTACGCCCTGCGTGTCCGCGGCTCGGAAATCCCCAAACACATGCTGGCTGACGTGTTCTCCAGTAGGACCACACTTCTCGACCCGGAGGAAGGAGTGGTTTAAGTCCTGCACAGCTTCTACAACATTGTTTATGTAATCTATGGTGTCCTTGTCTGCTTACGTTTCGCTCCAGTTTGATGTTTGTATGCATTTTTAATGGGATTGTTTGATATGGTTCGTGACACGCTGgttaaattttgtttttgttactaCAATAAAAACAGTGTTACAATAGACAATTGATTATTTTTCTTTGATAAAGATCTGATGACCTCAGTTGTTTTGCATGAATAAAAGTTCTGTGCCAAATA
>XM_039783544.1
ATAGCGCAAAAGCCCCGCGAGTTATGAGGACCGCATGGATGCCtgttattaaaaacaataaacacgATTTATTTCGCATCGTAGGGAATTGATACTTTATTCGGTGTCCCTATTCTCGGTCAGAGATGATAACTAGCATGTGTAAACGgagctgttttgtgtgttgacCTAGCTAGATAATCCATGACAGACGTAAAGTATTCTGCCTTGTTACAGTTGGTCGGCAGCACCTTCAGAGGCTAGCTAAATCAGTTCATATACAACCTAACCGAGCTTACAGtagttacatttattaaaagcaGACATTGCAACACTGAAGGCATGAATAGGCGAGAAGGTGAAGGATGTCCCCGGAGAAATGCTGATGCAGTGCAGGACCGTGATGCAAGTGCCAACCCATCCTCACCTGTCATTGCTGCTTTCAAAGTTTTCCAACAGGAGCTTGACACCAAACACGACAAATATGAGCGTCTTGTCAAGATCAGTCGAGACGTCACCATTGAAAGCAAGAGGaccatttttcttttacatagAGTGACCAGTGTACCAAATGCAGAGGATATTCTGAATGAAGCAGATGTGAAACTGGATGCAGTCAGGCAGAAAATCGGTCAAATTGCTGAAGAGCTCAGAGGAGAGGACATCTTTCAGTTTCACAGAGCTTTCACAGCAGGGATCCAGGAGTACGTGGAGGCCGTTTCTTTCCTGCACTATATCCGCCATCGCAGCCTTATCAGCCTGGAGGAGATCAACGCCAGACTGGTGTTCATGAGGACAGAGAAGGGCTCAGCTGAAGCCGTGCAGCCGGGAGGTCAGGTCCTGACCTTCCAGGTGACGCCCTCCGACTACCTGCTCGGCGTGGCCGACCTGACCGGCGAGCTGATGCGGATGTGCATCAGCAGCGTGGGCAACGGCGACATTGACACGCCCTTCCAGCTGAGCCAGTTCCTGCGGCAGATCCACGACGGCTTCTCCTACATCGGGAACACGGGGCCTTACGAGGTGTCCAAGAAGCTGCACACGCTGCGACAGAGCCTGGGCAAAGTGGAGGATGCCTGCTACGCCCTGCGTGTCCGCGGCTCGGAAATCCCCAAACACATGCTGGCTGACGTGTTCTCCAGTAGGACCACACTTCTCGACCCGGAGGAAGGAGTGGTTTAAGTCCTGCACAGCTTCTACAACATTGTTTATGTAATCTATGGTGTCCTTGTCTGCTTACGTTTCGCTCCAGTTTGATGTTTGTATGCATTTTTAATGGGATTGTTTGATATGGTTCGTGACACGCTGgttaaattttgtttttgttactaCAATAAAAACAGTGTTACAATAGACAATTGATTATTTTTCTTTGATAAAGATCTGATGACCTCAGTTGTTTTGCATGAATAAAAGTTCTGTGCCAAATA

Function

symbol description
tsnax Predicted to enable RNA binding activity and endoribonuclease activity. Predicted to be active in cytoplasm and nucleus. Orthologous to human TSNAX (translin associated factor X).

NR:

description
translin-associated protein X isoform X1

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039783543.1 True 1421 mRNA 0.48 6 23549140 23557843
XM_039783544.1 False 1409 mRNA 0.48 6 23549140 23557843

Neighbor

gene id symbol gene type direction distance location
gpr137ba gpr137b,LOC104924458,LOC103372484 coding upstream 54973 23488234 ~ 23494167 (+)
LOC120547587 ggps1,LOC102790345 coding upstream 197419 23337381 ~ 23351721 (+)
LOC120547586 ggps1,LOC102790345 coding upstream 230104 23303204 ~ 23319036 (+)
LOC120547578 NA coding upstream 423042 23112659 ~ 23126098 (+)
LOC120547579 NA coding upstream 438569 23099915 ~ 23110571 (+)
map10 NA coding downstream 204565 23762408 ~ 23765382 (+)
ntpcr ntpcr,LOC103137650 coding downstream 208760 23766603 ~ 23770420 (+)
npas4l LOC101471891 coding downstream 297872 23855715 ~ 23860867 (+)
zmp:0000000755 LOC100695905,LOC101469954,LOC102307746,LOC103371009 coding downstream 504912 24062755 ~ 24122075 (+)
klc1b klc4,LOC102306811 coding downstream 572941 24130784 ~ 24160603 (+)
G196195 NA non-coding upstream 5302 23543607 ~ 23543838 (+)
G196184 NA non-coding upstream 16081 23497168 ~ 23533059 (+)
G196174 NA non-coding upstream 78696 23467294 ~ 23470444 (+)
G196140 NA non-coding upstream 194799 23353972 ~ 23354341 (+)
G196124 NA non-coding upstream 288085 23258136 ~ 23261055 (+)
LOC120548378 NA non-coding downstream 312701 23870544 ~ 23874163 (+)
G196328 NA non-coding downstream 493346 24051189 ~ 24124149 (+)
G196336 NA non-coding downstream 602770 24160613 ~ 24162215 (+)
G196337 NA non-coding downstream 606357 24164200 ~ 24164631 (+)
G196332 NA non-coding downstream 710430 24268273 ~ 24270052 (+)
tasp1 tasp1 other upstream 856536 22647914 ~ 22692604 (+)
kif16bb NA other upstream 1364648 22155402 ~ 22184492 (+)
G195653 LOC102296834 other upstream 2034012 21514526 ~ 21515128 (+)
fbxo11a fbxo11,LOC104951339 other upstream 2216563 21318610 ~ 21332577 (+)
G195518 NA other upstream 2795331 20752773 ~ 20753809 (+)
disc1 disc1 other downstream 4440 23562283 ~ 23611337 (+)
klhdc3 klhdc3 other downstream 261071 23818914 ~ 23851605 (+)
LOC120547848 LOC103369904,LOC106907288,LOC107081732 other downstream 800083 24357926 ~ 24367599 (+)
LOC120548495 ate1 other downstream 810111 24367954 ~ 24426502 (+)
G196439 wdr11 other downstream 1006707 24564550 ~ 24569167 (+)

Expression


Co-expression Network