LOC120547848 (LOC103369904,LOC106907288,LOC107081732)


Basic Information

Item Value
gene id LOC120547848
gene name LOC103369904,LOC106907288,LOC107081732
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 24357926 ~ 24367599 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039783571.1
CATCCAAGACCAACTTGGGCTGTGGATGTGGCAGCAAAGTAGCGCCGGGTCTAGCTGACAACGTGTCTCCTGCAGTGCACTCACAAGTGTAGCTAGTTGTGTTTGGTTTTCTAGATTTTCACATTGTAAGCTGTCAAGTGCCAGTGCCATGTTTGCCAGGCTGGCCTTGTGCACTCGCCTGCCATCCAGAATCAGACAGTCCAATGTCTGTCCAGTCTCCATCAGATCACATTCCCAGGTTAAATTCCCACGTCCCCATGGAAAGTCTTTTGTCCACCGCAGTGAGTTAAAGCAGGCCAAGCGTATAGTAGTGAAGCTGGGAAGTGCTGTGGTGACACGCGACGAGTGCGGTCTGGCACTGGGACGACTGGCCTCGATAGTAGAGCAGGTGGCCATGCTGCAGAACCAAGGCAGGGAGATGATGATTGTAACCAGTGGGGCTGTGGCATTTGGGAAGCAGAGACTAAGACATGAGATCCTGCTGTCTCAAAGCGTCAGACAAGCCTTGCATTCTGGACAGAACCAACTCAAAGAAATGtccGTTCCAGTTTTGGAGGCGAGGGCATGTGCAGCTGCTGGACAGAGCGGTCTGATGGCGTTGTATGAAGCTATGTTTACCCAGTACAGCACCTGCACTGCACAAATTCTGGTCACCAACCTGGATTTTCATGATGAGCAGAAGCGTCGCAACCTGAACAGCACGCTCCATGAACTGCTGCGGATGAACATAGTTCCGATCATCAACACCAACGATGCTGTTGTTCCGCCCCCTGTTCCCAACAGTGATCTGCAGGGGGTAAATGTAATAAGCATCAAAGATAATGACAGCTTGGCTGCACGGCTGGCTGTTGAAATGAAAGCAGACCTCCTTATCGCCCTGTCTGATGTTGAAGGCTTATACGACAGTCCCCCAGGAACAGATGATGCCAAGCTTATTGATATATTCTACCCTGGAGACCAGCAGTCAATCACGTTTGGCACCAAGTCCAGAGTCGGCAGTGGTGGCATGGAAGCCAAGGTGAAAGCCGCCCTTTGGGCACTACAGGGTGGGACGTCCGTTGTCATTGCCAACGGCACACATCCTAAAGTCACAGGCCACGTCATCACAGACATTGTGGAAGGGAAGAAAGTTGGCACCTTCTTCTCTGAGGTGAAACCTGCAGGTCCAACTGTGGAGCAGCAGACCGAGATGGCCCGGCATGCAGGCAGGGCTCTGGCCTCCCTGGACCCTGAACAGAGAGGGGAGATCATCTGCTGTCTTGCTGAGCTACTTACAGAGAAGAAAGATGAGATTCTCAGTGCCAACAGGAGAGACATGGAGTTTGCAAATTCATCAGGTCGTCTCTCCCAGCCTCTGATCAACCGCCTGAGTCTGTCAACTGCTAAGCTGAACAGCCTTGCCATTGGCCTCCGTCAGCTTGCCGTGTCCTCCAGGGATAGCGTGGGTCGGGTGCTGAGGAGGACCAGGGTGGCCAACAACCTAGAGCTGGAACAAATTACTGTCCCCATCGGTGTGCTGCTGGTCATCTTTGAGTCCCGTCCTGATTGTCTCCCTCAGGTGGCAGCTCTGGCTATTGCCAGTGGAAATGCTTTGCTACTGAAGGGGGGTAAAGAAGCTTCCAACACCAATAAAATTCTACATCAACTCACTCAGGAAGCACTTTCCATTCATGGAGTGGCGGATGCCATTCAACTGGTGAGCACGCGTGAAGAAGTGGAGGATCTGTGCAGGCTCGACAAGTTGATCGACCTGATCATTCCAAGGGGCTCGTCCCAGCTGGTCCGGAACATCCAAAGGGCAGCTAAGGGTATTCCTGTGCTGGGCCACAGCGAGGGCATCTGTCACGTCTACATTGACAACGACGCCAGCATAGACAAAGCTATTGATGTCGTCAGAGACTCCAAATGTGACTACCCTGCAGCCTGCAATGCCATGGAGACCCTCCTCATTCACAGGGATCTGCTGCGAACTCCTATATTTGACCAGGTCATTGATATGCTGAGAACAGAAAATGTGAAGATCCATGCAGGCCCCCGGTTTGCATCCTATTTAACTTTCAGCCCATCTGAGGTGAAGTCTCTGAGGACAGAGTATGGGGATCTGGAGTGCTGCATTGAGGTGGTAGACAGCATGCAGGATGCTGTGGACCACATCCACAAATATGGCAGCTCCCACACTGATGTCATTATTACAGAAAATGAAGAGACAGCTGAACAGTTTCTGCAGCAGGTGGACAGCGCCTGTGTATTCTGGAACGCCAGCTCTCGCTTTGCCGATGGCTACCGCTTTGGCCTAGGAGCGGAGGTTGGTATCAGTACAGCACGGATACACGCCAGAGGTCCAGTGGGTTTGGAGGGGCTTCTGACCACCAAATGGGTCCTTCGAGGAGAAGGGCACACAGCGGCTGACTTCTCTGAGCAAGGCAGTATGAAATACCTTCATGAAAACATCCCTGTACCCCAGGGGAGCTTTAATTAAGTGCCCAACCAAAGAGCCATCAACAGGAATCCAGATTACTGATGTCTACCCAGAGTTCATTTGAAGGTTTGTGTCTGCCAGTAGCTGCTTATCACCTGTATAAAACCACTATGTTGGTGCAGGAAACTTGCATGCAGAACAGAGGCTACTTATACTGGACAACCATGTTCCTGCTTTCGTGAACCtgccataaaacattttttttttttttttttt
>XR_005637109.1
CATCCAAGACCAACTTGGGCTGTGGATGTGGCAGCAAAGTAGCGCCGGGTCTAGCTGACAACGTGTCTCCTGCAGTGCACTCACAAGTGTAGCTAGTTGTGTTTGGTTTTCTAGATTTTCACATTGTAAGCTGTCAAGTGCCAGTGCCATGTTTGCCAGGCTGGCCTTGTGCACTCGCCTGCCATCCAGAATCAGACAGTCCAATGTCTGTCCAGTCTCCATCAGATCACATTCCCAGGTTAAATTCCCACGTCCCCATGGAAAGTCTTTTGTCCACCGCAGTGAGTTAAAGCAGGCCAAGCGTATAGTAGTGAAGCTGGGAAGTGCTGTGGTGACACGCGACGAGTGCGGTCTGGCACTGGGACGACTGGCCTCGATAGTAGAGCAGGTGGCCATGCTGCAGAACCAAGGCAGGGAGATGATGATTGTAACCAGTGGGGCTGTGGCATTTGGGAAGCAGAGACTAAGACATGAGATCCTGCTGTCTCAAAGCGTCAGACAAGCCTTGCATTCTGGACAGAACCAACTCAAAGAAATGtccGTTCCAGTTTTGGAGGCGAGGGCATGTGCAGCTGCTGGACAGAGCGGTCTGATGGCGTTGTATGAAGCTATGTTTACCCAGTACAGCACCTGCACTGCACAAATTCTGGTCACCAACCTGGATTTTCATGATGAGCAGAAGCGTCGCAACCTGAACAGCACGCTCCATGAACTGCTGCGGATGAACATAGTTCCGATCATCAACACCAACGATGCTGTTGTTCCGCCCCCTGTTCCCAACAGTGATCTGCAGGGGGTAAATGTAATAAGCATCAAAGATAATGACAGCTTGGCTGCACGGCTGGCTGTTGAAATGAAAGCAGACCTCCTTATCGCCCTGTCTGATGTTGAAGGCTTATACGACAGTCCCCCAGGAACAGATGATGCCAAGCTTATTGATATATTCTACCCTGGAGACCAGCAGTCAATCACGTTTGGCACCAAGTCCAGAGTCGGCAGTGGTGGCATGGAAGCCAAGGTGAAAGCCGCCCTTTGGGCACTACAGGGTGGGACGTCCGTTGTCATTGCCAACGGCACACATCCTAAAGTCACAGGCCACGTCATCACAGACATTGTGGAAGGGAAGAAAGTTGGCACCTTCTTCTCTGAGGTGAAACCTGCAGGTCCAACTGTGGAGCAGCAGACCGAGATGGCCCGGCATGCAGGCAGGGCTCTGGCCTCCCTGGACCCTGAACAGAGAGGGGAGATCATCTGCTGTCTTGCTGAGCTACTTACAGAGAAGAAAGATGAGATTCTCAGTGCCAACAGGAGAGACATGGAGTTTGCAAATTCATCAGGTCGTCTCTCCCAGCCTCTGATCAACCGCCTGAGTCTGTCAACTGCTAAGCTGAACAGCCTTGCCATTGGCCTCCGTCAGCTTGCCGTGTCCTCCAGGGATAGCGTGGGTCGGGTGCTGAGGAGGACCAGGGTGGCCAACAACCTAGAGCTGGAACAAATTACTGTCCCCATCGGTGTGCTGCTGGTCATCTTTGAGTCCCGTCCTGATTGTCTCCCTCAGGTGGCAGCTCTGGCTATTGCCAGTGGAAATGCTTTGCTACTGAAGGGGGGTAAAGAAGCTTCCAACACCAATAAAATTCTACATCAACTCACTCAGGAAGCACTTTCCATTCATGGAGTGGCGGATGCCATTCAACTGGTGAGCACGCGTGAAGAAGTGGAGGATCTGTGCAGGCTCGACAAGTTGATCGACCTGATCATTCCAAGGGGCTCGTCCCAGCTGGTCCGGAACATCCAAAGGGCAGCTAAGGGTATTCCTGTGCTGGGCCACAGCGAGGGCATCTGTCACGTCTACATTGACAACGACGCCAGCATAGACAAAGCTATTGATGTCGTCAGAGACTCCAAATGTGACTACCCTGCAGCCTGCAATGCCATGGAGACCCTCCTCATTCACAGGGATCTGCTGCGAACTCCTATATTTGACCAGGTCATTGATATGCTGAGAACAGAAAATGTGAAGATCCATGCAGGCCCCCGGTTTGCATCCTATTTAACTTTCAGCCCATCTGAGGTGAAGTCTCTGAGGACAGAGTATGGGGATCTGGAGTGCTGCATTGAGGTGGTAGACAGCATGCAGGATGCTGTGGACCACATCCACAAATATGGCAGCTCCCACACTGATGTCATTATTACAGAAAATGAAGAGACAGCTGAACAGTTTCTGCAGCAGGTGGACAGCGCCTGTGTATTCTGGAACGCCAGCTCTCGCTTTGCCGATGGCTACCGCTTTGGCCTAGGAGCGGAGGTTGGTATCAGTACAGCACGGATACACGCCAGAGGTCCAGTGGGTTTGGAGGGGCTTCTGACCACCAAATGGGTCCTTCGAGGAGAAGGGCACACAGCGGCTGACTTCTCTGAGCAAGGCAGTATGAAATACCTTCATGAAAACATCCCTGTACCCCAGGGGAGCTTTAATTAAGTGCCCAACCAAAGAGCCATCAACAGGAATCCAGATTACTGATGTCTACCCAGAGTTCATTTGAAGatgaatAACAATCTCCTGAGACTATGATTGGTTGTTACGTGACTGGTGAGAGGGAAAGGTTTttggtaaaagaaaaacactaaaTTCTGTTATTTACATATGACCGGTGAAACAAAGTATACACAGACAAAGCTCTCTcctcctgtttaaaaaaaaaaaaaaaaagaagaagaaatgattGGCCTAGCTGTGGTTTTATAACTTATTTTTCTACATGCAAACTATCCCTTGGCCTTTTTGTAATGTACTTTAAGTGTTGTTTCTGCAGGATTGTGGTTTAGGTATTTTGCTGTCCTTCCTCTTTGCACAGATGATTTAATAAATATGCTGTACAGTTCTTTA

Function

NR:

description
PREDICTED: delta-1-pyrroline-5-carboxylate synthase-like isoform X1

GO: NA

KEGG:

id description
K12657 ALDH18A1, P5CS; delta-1-pyrroline-5-carboxylate synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039783571.1 False 2695 mRNA 0.51 17 24357926 24367255
XR_005637109.1 True 2887 transcript 0.50 18 24357926 24367599

Neighbor

gene id symbol gene type direction distance location
habp2 NA coding upstream 17742 24336122 ~ 24340184 (+)
LOC120548489 LOC101469311,LOC104948545,LOC103376395,LOC102786201,LOC102303134 coding upstream 21904 24331872 ~ 24336022 (+)
ablim1a ablim1,LOC102784938,LOC102304155 coding upstream 28685 24284646 ~ 24329241 (+)
srfb srf coding upstream 89902 24248198 ~ 24268024 (+)
ptk7b ptk7 coding upstream 112085 24211972 ~ 24245841 (+)
fgfr2 fgfr2,LOC102787384 coding downstream 87269 24454868 ~ 24494403 (+)
LOC120548496 cdh23,LOC107989583 coding downstream 375327 24742926 ~ 24840747 (+)
cdh23 cdh23 coding downstream 499661 24867260 ~ 24944419 (+)
smoc2 smoc2 coding downstream 587113 24954712 ~ 24976820 (+)
lrrfip2 lrrfip2,LOC102790484,LOC103477154 coding downstream 665873 25033472 ~ 25054947 (+)
G196332 NA non-coding upstream 87874 24268273 ~ 24270052 (+)
G196337 NA non-coding upstream 193295 24164200 ~ 24164631 (+)
G196336 NA non-coding upstream 195711 24160613 ~ 24162215 (+)
G196328 NA non-coding upstream 233777 24051189 ~ 24124149 (+)
LOC120548378 NA non-coding upstream 483763 23870544 ~ 23874163 (+)
G196454 NA non-coding downstream 271815 24639414 ~ 24639857 (+)
G196457 NA non-coding downstream 273100 24640699 ~ 24642057 (+)
G196475 NA non-coding downstream 475844 24843443 ~ 24843852 (+)
G196476 NA non-coding downstream 479515 24847114 ~ 24847690 (+)
G196481 NA non-coding downstream 506203 24873802 ~ 24913468 (+)
klhdc3 klhdc3 other upstream 506321 23818914 ~ 23851605 (+)
disc1 disc1 other upstream 746589 23562283 ~ 23611337 (+)
tasp1 tasp1 other upstream 1665322 22647914 ~ 22692604 (+)
kif16bb NA other upstream 2173434 22155402 ~ 22184492 (+)
G195653 LOC102296834 other upstream 2842798 21514526 ~ 21515128 (+)
LOC120548495 ate1 other downstream 355 24367954 ~ 24426502 (+)
G196439 wdr11 other downstream 196951 24564550 ~ 24569167 (+)
dact2 dact2,LOC103391347 other downstream 640875 25008474 ~ 25013249 (+)
cacul1 cacul1,LOC103374658,LOC102794354 other downstream 771448 25139047 ~ 25144254 (+)
LOC120548229 rab11fip2 other downstream 1114232 25481831 ~ 25495505 (+)

Expression


Co-expression Network