tarbp1 (tarbp1)


Basic Information

Item Value
gene id tarbp1
gene name tarbp1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 20393063 ~ 20407170 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039783737.1
TACATTCGGTTTGGAAAAAACGTGCTGCTGCCGGTTGCTGCTCATGGAAGTGGTGAAAAGAGCCGGTTGCGGGGTATCTTCAGCTTGCTTGTTCCTGGCAGTGTAGCAGCTCTCTACGATGTATTCCGTTTTAATTAACGCGGTCTTGTCCAGCTCTCCTGACTACGAGCTTTTGTTTGAGTCTCTAACCTGGCCGAGTGACTCATGGCCGGGGACGGAGCGAGTGGAGGCGCTGACAGCTTTCATTGAAGGACTCGGACCACTTTTGGCTGACTCGGACACGACTCTGTTTTCAGCTgcgaaaagaaaatgtattacagATAAAATCGACTCGGTGATTTGGAGCCAGTCTCTACCTCTTCTCTCCAAAATATCAGCTGAAGCCGGTGAAGCCATGCGGTGCAGGGAGAGTACCGCTGCTGCCTGCAGActtgtgagtgtatgtgtccCGCTATGTGACGAGGCTGTGCCGGGGCGAGTAGCGCGGTCTGTCCTGCCGTCGCTCCAGCTGTCAGAGGAGGAGGGGCCTGTTCCGGGTCGACTCAGTTTGGAGGTTGCTAGTGAAGTCATGGCTGCTCTTCTACCGTCTCTGGATGACCAGCTCACACTTACCACTCTGTCAGCTGCCTTGTCCTGCATCAAAACACTCCCTGATGCATTGGTCTCTAAAATCACAGTCAGGCTTCTTTTAACTGTCCTGAACTGCTGCAGCGGTGCGAGGTTAACGAGCATCCTCAAGTTGATCCTGGATGATCTGTGCATCTGGCACTCCGCTGACCGCACACCTGTGGTCACAGAGCGGGCACTGCTGTGTTTGACGGCCATGTCAGACCACTTGCTGAAACCTCACAGCCTccccttctcttcttcttcttcttcctcctcttcctcctgtgagCCCGACCCTCGTCTGTCCCTCCAGTTCTGGAGGATGGTTCAGGATGGACTGACGCACAGAGACAGCGTGTCTCGTAAAAGGGCGCTGtacctgctgaaaatgtgcgtgGCCCTAtcagaggaggagggggtggacTGTCCTCTCTCTTCATCAGGAGAAGATGACATCTTGTTCAAATGGGCCTCTAACAGGAGCAAGTTACTTAGAGAGTTCTGGGAGGATTACGCGCTTGTGATGGAGACCCTGGAGGAAAACCAGATTCATGTCGTCCGGCCAGTTCTAAACCGAATAGACACGTTGATCCAAACAACAGTGAATGACAGTCAAGCTTCAGATCAAGGCTTGTTCCACCCCTCctggctgctgtgtgtgtaccAGCGGATGTTCCACAGTGAGAATAAATCCTTGATGAGGGAGGGAGTGTGTCATCTGCTCGAGCTGCGTGTCCTCCAGCAGCCAGCCTTTGCTTTGGCCTTTTCTGAGTTCATCGTTGGCCCTTTTATGGATGTTCTGTCTGAAACGTCGCTCTTCCACAAGTCAGTTGGGCAGAGTGTAGGCGATTGTCCTGAGCTCGGGGCTAAACTCCAAGTCTTCATGACCACCTTCTTCAGCAGCCTACCATCAGAGCACAGAGGCCGTATGTTGCTGCAGATGATTCAGCAGCTGTGCTCTAAGCACTGGTGTgcggcaccccttctcttccTCACCCAGGCTCTATCCAAACTCCCCCCGAGCCCTCTGCTGGGGATCAATGGGCTCACTGCTCTCAGggaggtgctGCGCTGCACCATGATCACTCATCAAGTCCTGCTGAGAGGCGCTGCTCAGTGCTTCCTGCTAAATAGTGTCCTCTGTCTCACAGAAGTGAGCACAGTGACCCTCGATGATGTTTTTAGTTTCCTGGTGCATTTTCGTGCAGATGAGTCACTGTGTAGAGGGACGCAGATTTGGAATCAGTTGTGTGTCTGGCTGTTGGACAATGAAGGCCGTTTCACGCCCAGGATTACGGATGGAGATTGCACTGGTGCTGCCATAAAGGAAGAAACTGTAAGAGGCTATGTTCAAAGCGAGATGCACGCCTATCTCCGAGTCCCAGCTAGCACAGGTCACACTGAGAGGTTGCCTGACTCCAGAGAAGCCGACAAGTTGGCCAGGGCCATTCTGCTGTGTGTGGACATGGAGAGGAATCAACTCGGGGCAGAGATCGATAACTCTCTGGAGTCGTTGCTGTCGCCGCTGCTGGACACCCTGGGCCGAGTCAGCACCAATATCTACTTGCCTCTGCGTAAGAGCGACAAGAGCCTGCAGCTCGTGCTCCGACTGTTCCAGCTTGGAGGAACACCAAGCTGCCGGCATGGTGGAGAGGAGCAAGTGAACACCGTGATGGTTGCCATGGAGAGGCTAATTTTTAAACTTGTCAATCCAATCCAGGAGTTTATCTTGAGGCAGCTACTTGGGGAGCTGCAAGAGCTGTTTGACGTGGAGCGGGCAGAGCTGTATCTGTGTGTCCTGCGACAGCTGGTGGTCACGTACAGTTCCACACCACAGCACCACGGTCAAATTCAGCAGACCTATTTCCCTAAACTCATCAGGCACAGCCTCAAGGTCCTGCAAGAACCAAGCCAGCAGATCCACTCTGTGGCAAACCAGGTGGCTAGAGCGGTTGCTATGGCATCCCTGGCTACGGTATGTGGTCTCGTGGAGCAGAAAGGGATTGACATGCGATCAGAGACCATTTCCGTTCTGAAATCAGTGAATGACTACTTCTACAATCCAGTGTCATCTTCCTCCCAAAGTCAGTCCTCTCTGGGAAACTTCAATAAACGCCTGCAAAAACCACAGACGGGAGACGGTTCATGtgaTGTAGGAGTGCAGGGTCGTCTGCTGCAGGACTGGGGACGCATCGCTGCCAGTTTTATGCGGGACCAGTGGATTTGTCTGAGCTCCTTGATTAAGGCTGTTGGGATACCGGAGTCTGTCGACATTTCCATAGCGCCTGAGACTCTCAAGGCTGCTCTGAGCTGCAGTGTGGAGGCCCTGGCTCTGCTGCCCAGTGACCTGGTGCTGCCCGTGCTCACCTTTATGGAGACCGTGCTGCCACAATTACTACTTCATGAGGAGGCCCTGTGTGCTGAGGCTGTGACTCTGAGCTGGGAGCTGGTGCGTGGGCTGAGCACTAACGCCCATGACTTCTGGCCGTCCCTGAAAGGCTTCATCTCCATGGCCTTCCACCGTAAACTGCTGGAGCTGACAGATAGTTCTGCTCCAACACTTCTGGCCACCTTGAAACTGattgccACTGAGCTGATGGAGCTGTCTCAGTCAAAGAGTGGAGTGTTCGGCGTGCTGCTTCCACACTGCTGTCAGACATGGCTGCCCACAGACCGAGGCAGCGGCGACGGCATATTTTCTAGTGTTTTCAGCCACATCAACCTACTCACTGAGGCTTGTGTCTATGGACCGGTGTTCAGGAGAGATCAGCGGCTCATCCAGGATGTCCAAACATATGTGGAGCAACTTGGTGAAGAGTGTGCTGCCAACGTTGCAGTTACAAGTGATAACAGGGATGACCAGTTGCCCCGCACATGTGTACTGGCCTTTCTTAGCCGCCTGGATCCCTCTAATCTGCAGCATGAAAGACTAATAGAGGAACTAGTTATGGATTTGTTGAAAAAGGATAATGACATATCAAAGTCAAAAGTGCGTTACTATAGCAACTCCCTGCAGCATCGTGTCAAAAACAGAGTATGGCAAacactgctgctgttgctgcccAAAATCAGAGAGGAGTTTGTCGCCACTGTGCTTAACTGTGTGTTTGAAGCTGGATTCTGCAGTAACCATGCCTCAGTCAAGTACCTGATCGAGTGGATGATGATTCTGATCCTCATACACTATCCACAACACATGGACAGCTTTTGGGCCTGCTTCAACAGGGATCACGAAAAGACCAAGACAAGCATCTGTACCTTCCTGTCAGTCCTGGTACATTTCAATGTCATTGTTCCTAATCTTAAGGATAAGGATGTGCATTTGCGTAAAGCGCTGGACATCATCCTGCAGTGGTGTTTCAACCATAACTTCAGCGTGCGCCTGTATGCATTACTGGCCCTGAAGAGGGTGTGGAGCTTGGCTGGGGTCCGGGCAGAGGAAGGGGCCGAGGGTTTCGGAGGGCTGTCCACTGTGATCAAGGCCTGTCTGAACCAGGCTGAGGCCATGCAGAACACCGGAAATGCCAACAAGAACTGGACGAGGATTCAGGAGCACTTCTTTTTTGGCGCCTTTCATCCTATCAGGGATTACAGTGCTGAGACCATATTCTATACGTTCCCCAGTCTGTCAGAGTTGGCTGATGAGGAATGGATTCCACCCTCGAAGTTTGAGAAACTGTTGTGTTTCTCTGAAAGTCCATCTTTTCCTTTGAGAAATCCTGCTCCTGACCTGAGTCAACTCCAGCCTGGAGACTGGATTCAGCAAGACAAAGGCGAGCAGAATAAAGAGGAGCGCTGGGCCGAGGTGCAGAAGAAGATCACTCCCTGGAGGTTGGGGATCCAGGAGCAGGAGCCTGAACTTCAGCTTGTTCCACAACAGAGGGCTGCTCGGCTGGGCAAACAGCatggtgccctgctggtggTAGCCTCACTTATAGACAAGCCCACCAATCTAGGAGGTCTGTGCAGGACCTGTGAGATCTTTGGTGCCAGCACTCTGGTTCTGGATAGCCTTCGCCACGTCAGTGACAAACACTTTCAGTCCCTGAGTGTCTCGTCTGAGCTCTGGCTTCCTCTGTTAGAGGTGAAGCCAATGGAGCTTGCTGACTTCCTGCAGGTAAAGAAGAGTGAAGGGTACTGTATTGTTGGAGTGGAGCAGACGGCCAACAGTCAGAGCCTCCAGGACTACCAGTTCCCTGAGAAGACCCTGCTACTTCTGGGCAACGAACGAGAAGGTATCCCTGCCAATTTACTCCAgatgtttgatgtgtgtgtggagatCCCTCAACAAGGGGTCACCCGTTCACTAAACGTGCATGTAAGCGCTGCCCTGCTGATTTGGGAATATACACGGCAACATCTCACCTCTGGCTCAAGAAAGGTCAACTCAAAACCTGAAAACTGAAGAAGGAACCAGCAGTGCAGCCCTATGGCGGTGACATCTGACCTCCAAATGTTGAGCTTAACTTGCTCCTGTCTGGCAGCAAGTGTTAAAAAGCCTCTTGGGGAACATGAATACGCTCCATACAGTTAACGCCAGGACCTTACGTATTTTTATGTTCTGTCTAGATAGGACTCTGTTCTTTTAGGTTTTGATGTGGTCAGCAGTCATCAGTGCTGCTCTTGTGCCTTTAATTAGAGTCATGAATAGAGATGGGCTCTGGTTATTACATCTAAATATACCACTGGGCATGCTTTTATATTAATGGAGGCAATCTCTGTGTTGGCAGAGCAGAAGCATTAATGGAAATCTTCCCCTTTGAGGAGGAATGGTCTTGTTTATGTGAgcaattagtttttttcccctcatggCACCAGGACTGGACTATAATGTCCATACCCAGGAAACTATTTACATAATGTATAAATTGTCTGTgttctaaatgtttttattgcagtttgtaattttaaactgtttttaatgcaGTTGAATAAATACAACtttgacatta

Function

symbol description
tarbp1 Predicted to enable tRNA (guanine) methyltransferase activity. Predicted to be involved in tRNA methylation. Predicted to be located in nucleus.

NR:

description
probable methyltransferase TARBP1, partial

GO:

id name namespace
GO:0006396 RNA processing biological_process
GO:0001510 RNA methylation biological_process
GO:0008173 RNA methyltransferase activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K15333 TRM3, TARBP1; tRNA guanosine-2'-O-methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039783737.1 True 5561 mRNA 0.51 29 20393063 20407170

Neighbor

gene id symbol gene type direction distance location
zgc:172136 frmd1,LOC104965675,LOC102789325 coding upstream 415 20381431 ~ 20392648 (+)
trnaw-cca_26 NA coding upstream 14780 20378212 ~ 20378283 (+)
fam135a fam135a coding upstream 21520 20355661 ~ 20371543 (+)
LOC120548537 col19a1 coding upstream 62841 20234539 ~ 20330222 (+)
phf3 NA coding upstream 594130 19785607 ~ 19798933 (+)
LOC120548163 NA coding downstream 174 20407344 ~ 20410929 (+)
map3k4 map3k4 coding downstream 75086 20482256 ~ 20505792 (+)
psme4a psme4 coding downstream 198698 20605868 ~ 20640367 (+)
gpr75 gpr75 coding downstream 233663 20640833 ~ 20645170 (+)
LOC120547712 nrxn1,LOC102793382,LOC103356500 coding downstream 432417 20839587 ~ 21105300 (+)
G195361 lmbrd1 non-coding upstream 215426 20176520 ~ 20177637 (+)
G195285 NA non-coding upstream 624746 19768074 ~ 19768317 (+)
LOC120548551 NA non-coding upstream 1031847 19358047 ~ 19361216 (+)
G195115 gclc non-coding upstream 1117841 19272600 ~ 19275222 (+)
G195087 NA non-coding upstream 1174021 19218736 ~ 19219042 (+)
G195511 NA non-coding downstream 238140 20645310 ~ 20658889 (+)
G195520 NA non-coding downstream 362724 20769894 ~ 20770215 (+)
G195565 NA non-coding downstream 858115 21265285 ~ 21265663 (+)
G195570 NA non-coding downstream 871677 21278847 ~ 21280312 (+)
G195575 foxn2 non-coding downstream 878261 21285431 ~ 21289210 (+)
adgrb3 adgrb3 other upstream 236115 20041774 ~ 20156948 (+)
gfral NA other upstream 962967 19426475 ~ 19430096 (+)
zgc:163080 tmem14a other upstream 1176640 19212832 ~ 19216423 (+)
mcph1 mcph1,LOC102776803 other upstream 1193058 19167986 ~ 19200005 (+)
G195036 LOC103369008,LOC106520712 other upstream 1261122 19126220 ~ 19131941 (+)
G195448 thbs2 other downstream 122597 20529767 ~ 20530315 (+)
G195518 NA other downstream 345603 20752773 ~ 20753809 (+)
fbxo11a fbxo11,LOC104951339 other downstream 911440 21318610 ~ 21332577 (+)
G195653 LOC102296834 other downstream 1107356 21514526 ~ 21515128 (+)
kif16bb NA other downstream 1748232 22155402 ~ 22184492 (+)

Expression


Co-expression Network