pcbd1 (pcbd1,LOC106525612)


Basic Information

Item Value
gene id pcbd1
gene name pcbd1,LOC106525612
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 25296263 ~ 25299446 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039783765.1
ACCAATGCTGACATATGTGGCAGAGTAGCCTATCAGCAGTGAGGATTTCTGCTCAGGCTTCTGCAGGGGCAGCTAAGCAGGACCTACGGCTCATGTGCATGTGTCAGATTAGATTCATTCCAGTCGCTCTGTGCAACAGGGAGCTGGAGCTGAACCTCTTCTGTGCACGAAGACACTCTGCAAACATGGCTGGTAAAATTCAGAGTctgactgaggaggagagggccCACCTACTCCCCCTGCTACGCAACGCTCAGTGGGTGGAGGTTGTGGGACGGGACGCTATTTACAAAGAGTTTATTTTCAAAGACTTCAATCAGGCTTTTGGTTTCATGTCCAGAGTGGCTTTACAAGCAGAGAAGATGGACCATCATCCGGAGTGGTTCAACGTCTATAACAAGGTCCAGATCACTCTCAGCACACATGACTGTGGGGGGCTGTCCCAGCGAGACATCACTTTGGCCACCTTCGTTGACCAGGCATCACTGATGTGAGCAACCCACATTGTCAGTCATTTCAACAGTGAAAACTGAAGTGCTTCGTATATTCATTCCACTGAGGAATCGGAAGATGTGACCTGCAAATCCAAAGAAATTCCAATGAATTGTGAATAATGTAGCTGTATGTATTAGACTGCAAAGGGtccaatttgtttaaaaaaatatgttgttggTTTTGCACTTGGTGAATAATTATTAGCCAAAGGTTAATGGTAAAATGTTTACACATTAAAGTCTTAAGAATCAAGTTATTTCTCAGCAACTATTCCATAGAACATTTACAGTGGTACGTGTTCCTCTGTCACATAACTAGTCTTTTGTGCCATTGTTTTTGTACTTTACTGTTCATAAATGTTATTTTCTGTCAAACTGTTCATGTCATAACTGAAAGAAATGACCAGAAAATGATCTTCTCATCAGACTGAATGCATTTTATTGAGAACACTGTAGACAGTCTGCTCAACTAAGAGGGATTGTGTTAACTGCTCAGAGTGGGTTAACAGTGTTTGCTAAACAAGGATGTACGCTGACATGAACACAAATTTTTAAACCTGTGTACATTCAGAACTTCATGAGGACATAGTGTACAGGGGTGGACACAAGTCAGTAAGACTTTACAATATAATGCAATTCCAGTACCCCTGTTTGTCTTACTTTGTCCACCTTGTGTATGTTTGAAAGACCAGTGGACCTCAATGAAGTTATGAAGCCAAATCCCTGAGGATGTTAGAGAGAAAATCGGCAATGACGTGAGTTCAAACCTCCGAAAGCACAGAGGTGAACGCTCATTCTTGCTACATTGTCACCAATCTGCAACGTAATAAACCTGTTCCAGTTTGTA

Function

symbol description
pcbd1 Predicted to enable 4-alpha-hydroxytetrahydrobiopterin dehydratase activity. Predicted to act upstream of or within tetrahydrobiopterin biosynthetic process. Is expressed in lens; liver; and solid lens vesicle. Orthologous to human PCBD1 (pterin-4 alpha-carbinolamine dehydratase 1).

NR:

description
Pterin-4-alpha-carbinolamine dehydratase

GO:

id name namespace
GO:0006729 tetrahydrobiopterin biosynthetic process biological_process
GO:0008124 4-alpha-hydroxytetrahydrobiopterin dehydratase activity molecular_function

KEGG:

id description
K01724 PCBD, phhB; 4a-hydroxytetrahydrobiopterin dehydratase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039783765.1 True 1341 mRNA 0.42 4 25296263 25299446

Neighbor

gene id symbol gene type direction distance location
LOC120548364 sec23ip coding upstream 63751 25222425 ~ 25232512 (+)
inpp5f inpp5f coding upstream 82759 25198539 ~ 25213504 (+)
bag3 bag3 coding upstream 98392 25191819 ~ 25197871 (+)
pkd2l1 pkd2l1,LOC104965266,LOC104921890,LOC103371634 coding upstream 118804 25171104 ~ 25177459 (+)
atoh7 atoh7 coding upstream 127213 25167925 ~ 25169050 (+)
neurog3 NA coding downstream 16949 25316395 ~ 25318133 (+)
fam204a fam204a,LOC102781047 coding downstream 114547 25413993 ~ 25430909 (+)
dennd10 fam45a coding downstream 306020 25605466 ~ 25610518 (+)
vwc2 vwc2 coding downstream 378749 25678195 ~ 25707242 (+)
LOC120548498 NA coding downstream 423163 25722609 ~ 25734715 (+)
G196595 mcmbp non-coding upstream 76349 25219547 ~ 25219914 (+)
G196563 NA non-coding upstream 106584 25189430 ~ 25189679 (+)
G196558 NA non-coding upstream 114450 25178159 ~ 25181813 (+)
LOC120547601 NA non-coding upstream 177139 25111395 ~ 25119124 (+)
G196485 eif3l non-coding upstream 347231 24947838 ~ 24949032 (+)
G196648 pdlim1 non-coding downstream 18820 25318266 ~ 25320869 (+)
G196690 NA non-coding downstream 128197 25427643 ~ 25433896 (+)
G196696 NA non-coding downstream 197222 25496668 ~ 25499280 (+)
LOC120548233 NA non-coding downstream 202083 25501529 ~ 25584577 (+)
G196782 NA non-coding downstream 480080 25779526 ~ 25794408 (+)
cacul1 cacul1,LOC103374658,LOC102794354 other upstream 152009 25139047 ~ 25144254 (+)
dact2 dact2,LOC103391347 other upstream 283014 25008474 ~ 25013249 (+)
G196439 wdr11 other upstream 727096 24564550 ~ 24569167 (+)
LOC120548495 ate1 other upstream 869761 24367954 ~ 24426502 (+)
LOC120547848 LOC103369904,LOC106907288,LOC107081732 other upstream 928664 24357926 ~ 24367599 (+)
LOC120548229 rab11fip2 other downstream 182385 25481831 ~ 25495505 (+)
zgc:110045 LOC102779765,LOC102305383,LOC100704767,LOC101482925,LOC102197868 other downstream 295050 25594496 ~ 25674906 (+)
prdx3 prdx3 other downstream 313961 25613407 ~ 25620675 (+)
LOC120548053 LOC103353497,LOC102790632,LOC102299158,LOC102194143,LOC101482614,LOC100706574 other downstream 517805 25817251 ~ 25826429 (+)
stpg4 LOC103353520,LOC101467386,LOC102793681,LOC102299197 other downstream 1235838 26535284 ~ 26548760 (+)

Expression


Co-expression Network