LOC120547961 (LOC103372209,LOC104933668)


Basic Information

Item Value
gene id LOC120547961
gene name LOC103372209,LOC104933668
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 28817833 ~ 28854223 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039783802.1
GGGAAATCGGCACCTTGAAGAAGGAAATGGGAAAGAAGACTGAGCCTGCAGAAGGAGACCACAATACAGATACACTCCTTGGGCTTCCCCCTGTGCCGGGATGGGAGCAGGGCTGGCCAGAGCCAGAGATTCGGGCTACGATTCCCTGCATCGGCGGCTCAGTGTTCTGGACAGACTGGTGCAGACGCATGCTGTGTGGCTCCAGCTGGGCCTCAGCCACCAGGACGCCATACATATACTGCAGAGCCAACCCACTGGGACATTCGTGGTGAGGAAGTCAACTAGCCTGCAGAGGAAAGTAATATCGCTACGCATGGACAAAGAATCTGCAGTTCCTGTCAAAGACTTCCCTGTCAAGGAGAGCCAGTACACTTTCTCTTTGGTGGGATCAGGCCTGAGCTTTGCAGACCTTTTCCGTCTGGTGGCTTTCTGCTGCATCAGCAGGGATGTGCTGCCCTTCACTCTGAAGCTTCCAGAAGCCATCGCTTCAGCCAGAACCTCTGCTGATCTCGAGGAGGTTGCTAAACTTGGAGCAGGCTTCTGGGATGCTCATTGTTGCCACAGGAGGAAGGACTCGGTCTCCTTGTCTGGAATAGCTGCTCCCGAGAGACCACCTCCCCCTGCCCAGAGACCAGTCTCCTCGGCCACCAACCCAAGGCGTCCTCGGCTTCTAACCCGCACCCCATCAGAGCTTGAGTGTTACCAACCTAACGGAGCACTTTGCTTCATCAACCCCCTCTTCATAAAGGTTCACCAACCAGATGGTGACCACAGCACCGCTTCAAATCCCTCTGGTACAGCAAAGCAAGGCCTGAGGGAGGAAATTGTCAGCGACAGCCTAGAAACCAACAACACGGACACTCAACACCCTTGCAGAGACAGTCATCAGGTCTGTAGTTCAGAGAAAAGTGACAGCAGCCAGTTCGCTCAAAGCAACCTTCAGAGCCTCGACAGAAACACAGAGTTACCGGACATTGACAGCCAAACCAGTATCAGCAGCAGCCAGAAGCTAAGCCCTGCAGACAGCGTGCCGCGGTCCCCACCTCCACGTCCACCCCCGCCTCGCATTGTGCTGCAACGCTCAGCCCCTCCTCTCCGACAGCGCAGCATGCCGGAGAAGATCGCCTGGATCAACGTCCccaaggagaagatggaggatAGGGAGAGGGGCAGCAGCCTCCTTTCTCGTCTGGGCTCCTCGCTAAGCATCAGCCCCTCGTCCTCCCCTCCCAAGAGATTTAGCATCAGCTCCCCCATATCCATCCCCCGGCCCTCCCTGCCCATCTCTCTAtcatctctctcttcctctccacgCCGGGCCAAGGCCTCCCCATCATCCAGCCAGGAAGATGCCCAGTGCCACCTGGCGCTGGAGGACCAAACTATAGAGAAGGCCCTGATTAGGGCCAGACTGTCTCGGTGTAATGCTACCAGAACCTCCACCCAGGACTCCAGTAGTCCTCCAGATCCTTCGCTGATGACATCAAGCAAGGAGGCAGAtgagacaggaggagaggaagaagaagcagGCGAGGAATGCAGTGGCAGCGGCCAGCGGCTGAGCGACATGAGCCTTTCCACAGATTCCTCAGACTCTCTGGATTTCTCTCAGTCCTCGGCCTTCTTCCTTCCCCCTCTGCATGACCCCAGTCCCCCCACGGTGGCGGACTTTAACACccacctccccctctccctcccaccGTCCCACCTGCCTTACTGCAGCATGGAGGACGACGATGACGAGGAAGACGACGAAGAAGAGGAGCCCGACTATGGCGTCAGTTTGGAGAGCGACCAGGACCAAGATCAGGACCTGACCATGGTACCGCCGGGTCACCGCACAAAGCGCCGCCCCAGCGCCAGCGCTCTGGTCCTGCAGAAGGCCCTGCGAGGGCAGCTGCGCAAGATGAGCGGTGTTTTCAACTCTCTGCTGACGCCTGAGAAGAGGGCGATTCGCAGGGTGCTGGAGCTGTCCCGGGATAAAGGCTCGTACTTTGGCTGCCTGGTGCAGGACTACCTGAGCTACATGAGCGAGGGTGCGGGCACCCAGGCCTGGCAGGGCTACGCCTCCGGACTGGAGCTGCTGCAGACTCTCCGCCAGTTCATCACTCAGATGAAGAGCTACCTGCGACAGAGCTCCGAGCTGGAGCCACCACTCGAGAGTCTCATTCCTGAAGACCAGATCGACCAAGTCCTGGAGAAAGCCATGCACAAGTGCCTCCTGAAGAACCTGAAACCGGTGGTGAGCGCCGCCCTGCAGGAGTTCCAGGTGCGCAGTGGCGAGTGGCAGGAGCTGAAGGAGAACCTGGCGTTGGCCAAGGCCCGGCAGCCGcaggaaatgggcgtggccgaCACACTGCCGCCGGACCCCGTGGCCATAGAGAAGATCAAGCACAAGTTCCACACCATGAGTAAACTGTACTCCCCTGAGAAGAAGGTCACCATGCTGCTGAGAGTCTGCAAGCTCATCTACACCATCATGGAGGACAACTCAGgtcgtctgtaCGGTGCTGATGACTTCCTGCCCATGCTGACCTATGTGTTGGCCCAGTGCGACATGCCCCAGCTGGACAACGAGATCCTTTACATGATGGAGCTGCTGGACCCCTCTCTGCTCCATGGAGAAGGCGGCTACTACCTGACCAGCGCATATGGAGCCATGTCCCTGATTCGAAACTTCCAGGAGGAGCAGGCAGCCAGAGTGCTGAGCTCTGAAACCAGGAACACCCTCCACCAGTGGCACCGCCGACGCACCACCCAGCGCTCCGCCCCGTCCATCGATGACTTCCAGAATTACCTGCGGGTGGCGCTGCAGGAGCTGGACAGTGGCTGTACTGCCAAGACCATACAGGTCCGCCCGTACGCCTCAGTGGAGGAGGTGTGCCACCTGTGTGCCCAGAAGTTCAAAGTGTCGGACCCTGAGAACTACGGCTTGTTCCTGCTGATGGAGGgcagcagccagcagctggCGCCAGACACCCACCCTCAGAAGATCAAGGCAGAGCTCCTCAGCCGCACGCAGGCCACTCCCTTCCACTTTGTCTTCCGCCGCGTGGCCAAAAGCGACGCCTCGCCGTCAGATCCCCCCGATCGTACACCCAACTTCAACAGCCTCACTGTGGCCGCGGACCCCCACGCCAACCTGAATCAGCTCAGCATAGATATGTCCGCCCCTTCCCCCCAGCCCCCTCTCAGCTCAGGCCTCAGCCCCACTCTGAGCCTCAGTCTGCCGCCCAGCCACATCAACAGCAGCTCTATATCTCTATGACTGTAACAGAGGGGGACTGAAAGTTTGACCcgttcattcctatgagagttgtTCAGTGGCGCATCCGCCAAAAAGTTTCTAAGCTTCCGGGTTTGCTTCCATGATATGTGACCAATGACTACGCGCAATAGTGTTTTTCTCGCTCGGCCCATAGACTTTACATTGTGGTGACATCACAGGTTTTTGAATCGCTTTTCTCGGCTCGAGGGaagtttttcaaaaataaaaagtccatgttcaattcaattctgaaTAGAAAGAGTTATAACCGCGCTTGTTTGCAGTCGAGGTGTCCTGGCAGCAGTTTTACCCGTCTCTTTTACAATGGTGGCCTATGGGGGAAATCCTTTCTGAGTCGCAGAGGGATTTTTGTTGCAATACGGCCAGTGGCCACTGGACAAAATCAGCGGAGGGGCTGAGCGCTGTATGTGGGGGGCCTGGTTTAAACGGGGGCTTATCTCTAACAACCGGGTTCAACCGGGCTATGTGTCTGTACAAAATCTGACTTCTCCTTTTGGATGGCACGTCTGTCTCAGTCAACATCCCACTCGCTGGAAAGTTCGGTCAGACAGACACCAgtgaaagaggaaaggaagaaaggaggaaaggaaatgaaagagattgagttttttttcttccttggtTGGCTCTATATCTGGCATCAGGGCATCATTTTGCTGAGCACAACTCTCAAAGTCTAAACACACAGTTAAGGTAGAGCTGTTGGAGATAATGTACTTAAGACCACACCAACACTAAAATGTTTTCACGTGCAGATTCAGGGTCAGCTGTTCTTGTTGTTAACCTTTAGGGTAAATAGAGGGAAATCAGATCTCTGATACATGTGAGACTAATCTTTGATCAATTCTTTTAAATATACAACAGTTGCTGGTAAACTGTGTTATTATGTCGTTTGTGTTTTGAAACTGTTAATCCTCCAGATTGTTTCTATGTTTTTAAGGGTGTGGCGACACCCACTGGTGGCTGGTGCACATAGCAAGAGTCCCATCTGAAACAGAACAGTGATGGCCTCAGGTGGGAAGCAACGCAATACGCTGTCCTGCAAGGTATACCATGCAGCAACTAGTCTACAACTAGTTATTCTACTCctcatttaaagaaaaaaactgtacaGATACAACCTCAACACACAAAAGAGCACAGTACTCACCATGGACAACTTTTGAAAAAAGGATCAAAATCGATGCGACAGAACCAGCAGAGATATATTAATTAGATATTCCACACATCCTTCCTCAAAACCCggtgcctacattacccacaatgcagaTGCtccataatgtaaaaaaaaaacaatggtgcCAAAAGTGTGGTGCCAAGGAAAAAA

Function

NR:

description
PREDICTED: ras and Rab interactor 2-like

GO: NA

KEGG:

id description
K23687 RIN2_3; Ras and Rab interactor 2/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039783802.1 True 4616 mRNA 0.54 10 28817833 28854223

Neighbor

gene id symbol gene type direction distance location
si:dkey-187a12.4 LOC104933667,LOC104950525 coding upstream 16457 28790784 ~ 28801376 (+)
LOC120548038 tuba1c,LOC108255233,LOC103148207,LOC108247626,LOC106920718,LOC101079871,LOC101066234 coding upstream 27928 28787046 ~ 28789905 (+)
LOC120547521 nanp coding upstream 47754 28764397 ~ 28770079 (+)
LOC120547955 rmdn2 coding upstream 131765 28635328 ~ 28686068 (+)
LOC120547570 kmo coding upstream 309393 28487523 ~ 28508440 (+)
LOC120547808 NA coding downstream 703040 29557263 ~ 29558335 (+)
LOC120547721 LOC103357097 coding downstream 774508 29628731 ~ 29632761 (+)
LOC120548236 LOC103357099,LOC103387711 coding downstream 792500 29646723 ~ 29655051 (+)
pcca pcca coding downstream 805189 29659412 ~ 29698143 (+)
cdt1 NA coding downstream 1102497 29956720 ~ 29963090 (+)
G197409 NA non-coding upstream 110628 28706883 ~ 28707205 (+)
G197378 NA non-coding upstream 307356 28508978 ~ 28510477 (+)
G197299 ide,LOC104941703,LOC102291663 non-coding upstream 342916 28465146 ~ 28474917 (+)
G197287 NA non-coding upstream 365824 28449580 ~ 28452009 (+)
LOC120548567 NA non-coding upstream 406350 28409470 ~ 28411483 (+)
G197439 NA non-coding downstream 13079 28867302 ~ 28867503 (+)
G197441 NA non-coding downstream 19955 28874178 ~ 28874530 (+)
G197446 LOC100696947,LOC101488034,LOC102786940,LOC102291530 non-coding downstream 35245 28889468 ~ 28891827 (+)
G197514 NA non-coding downstream 351045 29205268 ~ 29205577 (+)
G197525 NA non-coding downstream 439295 29293518 ~ 29294176 (+)
ccnj ccnj,LOC102785723 other upstream 515500 28294205 ~ 28302333 (+)
LOC120548047 adgra1,LOC103360772 other upstream 1036792 27554928 ~ 27781041 (+)
LOC120548261 LOC102312438,LOC102207415,LOC101470427 other upstream 1306241 27451950 ~ 27511592 (+)
LOC120547882 inpp5a other upstream 1708693 26926418 ~ 27109140 (+)
pwwp2b pwwp2b other upstream 1864028 26874215 ~ 26953805 (+)
LOC120548242 ccdc85a,LOC104955469,LOC102783086,LOC102310250,LOC102209339,LOC100696856 other downstream 258465 29112688 ~ 29177494 (+)
G197531 NA other downstream 494202 29348425 ~ 29349928 (+)
LOC120547718 LOC102789565,LOC100690068,LOC101471749,LOC103357097 other downstream 664718 29518941 ~ 29619016 (+)
LOC120547658 NA other downstream 1299288 30153511 ~ 30201820 (+)
G197999 NA other downstream 2380141 31234364 ~ 31234723 (+)

Expression


Co-expression Network