cdt1


Basic Information

Item Value
gene id cdt1
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 29956720 ~ 29963090 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039783843.1
GATTTAGCGCGAATTTTCTTACTTCTTCCtgtgaagtgtgaacatttCCGGAGATCTATTGTTTGTGGACAGTATTTATAGCTTTACAGACTTCAGTTTATTGTAGATTCTTGCAGTGTTTTACTTTGCGGTGCCTGTGTCCACCTCAAGTAGCAGTAACATGTCTCAGGCTCGCGTTACTGATTTCTTTTTCCAGAGAAAGAAAGGTATCGCCGGGCCAGTGAAACCAGCCAAGCAGCGCAGGAGCGCTGTTGTCGAACATGGCTCTTCTGGGATCAGCACAAATGTTGCCAGCACAAGATCAAGATCCTCGAAAAACAAAGGTGGTTTCCAGTGTTCGTCCTCCGTCCATGAAGAGTTTGTCCGAGTTATCGACGAGGCAGTGGAGCTAAACTACGGAGAGTGTGTTAGTAACACTGCGAAAGATGCATACTGTAGTCCCCGGACACCAAAGCGGACCTCGGCCGAGACAGAGTTCGACCTCGGtgcagccctgttttcagccaCCGCCGACCACAGCACAGCCAAGAAGAGACGGCAAGCGGAGGCTGTTAAAGAAGCTGAAGTTTTAGAGAAAGCAACTACGAAGGCCAGGAAGGCCAGAAAGAAACTGGTTCTCCCTCAAGACACACCACAGGCTGCAGTCCAGCCCCTGCCCAGTCAGGGGACCAAGCAGCACTCAGCTCCGGCAGCCTCGGTGTCTGGGCAGAATGCGGAGAACCACCTGAACCTCCATACCAACAGCTCTCCGCAGAGGGAGCAGGTCAGCCGCAAAAACACTGAAGGACAGGCCAGCAAGGCTTTGTGTAAAGAGGACATTTCAGCCCTCAAGTCTCGCCTTCAGAGGATCAAGAAACATGCAGAGGAATTAACCAGCGCTGCTCCTCGTAATTCAGCTTCcacatcctcctcttctccaGCTGGTTCAGCTGCCAACGCTACCACCCCCCTTGTCCCCAAAACCGTCTTGCCTGCCACCTGTGATGCTAAGACCCTCAAGTTCACTGTAGCACAAGTTAAACAGCTTGCAGCTGAAGTTCAGCAGAGGAAGGTGGAGAGAGAGGCCAAGGAGAGCAAGCAGAGTGAGGCACAAATCCCAGACAGTACTGAGCAGCCAGGATACCAGCGGTACCACAACCTTGCCCAGGCGGCCCCCCCGGGACTGTCCCTGCCTTACCAGTACAAGGTGCTGGCTGAGATGTTCAGGAGTATGGACACTGTGGTCGCAATGCTGTACAACCGCTGTGAGGCAGCCACCTTCCCCAAGATCAAACGGGGAGTTCAGGACATGATGCACAAGCGATTTGAGGAGAGCCACGTTGGTCAGATACAGACGGTGTTTCCGGAGGCGTACAAATTTAGACAGGAGAAGAACATCCCAACCTTTAACAGCAACATTAAGAAGGGCAGCTACCAGCTCACTGTGGAGCCCGTCATTCTCTCTGACCAGAATGAAGCTTGTCCTCTCTTGTCTGCCTCTCGTCTCCTGGAGAGAAGACGCATCTTCCACCTGAATTTGGTCTCCATTGTCAAACGGCACCACAAGGTATTTCTATCCACATTGGTTCCACCAATTCATGTTCCTGAAGACAAACTGACCCGCTGGCACCCTAACTTTAATGTGGACACTGTGCCAGCCATCTTGCCTAACTCGATGCCTCAGCCTCCTCACACGGACAAACTGTCCACTGCTCAGGAAGTGCTGGACAAGGCTCGCTCACTCATGACGCCTAAGATGGAGAAGGCTCTGGTTTCTCTGGCTCTAAAGACTGAAGACAAAGCTGCAGAGAGTAAAGAGCCAACCTCTCCGCAGAAGCCAGCAGTCCCCCAAGCATCTGCtcagtctgcagctgcagctcaAGTTCCAACTGCCCTGAAAGGAGTGTCCCAGTCCCTGCTGGACAGGATTCGGGCAAAGGAGGCCCAGAAGCTCCAGGCAGCCATGACTCGAAACCCCACCCAGGAAGAGCGCCTGCTGATGATGTCACGGTTTCCTGAGCTTGCCCGGATTCTCCGAAACGTTTTTGTTGCAGAGAAGAAACCGGCTTTAATATTGGAATTGGCCTGTAACAGGATGGTGGCCAGCTACAAATCTGCTCTCAGCACAGGTGAAATGGAGAAACACATCCGTCTGCTGGCAGAAgtggctgctgattggctgactaTTCATCCAGTCAGGAAGGACTTCTACCTGAAGTTGAACAAGAACATGGAGCTCAACATCATTCTGGACAAACTGAGCAGCAGACTCCGAGATGAAGAGAAAATGTAACATCTAAATGATGACTGATGTGATAGCCTTTCGCACACCTGACTCTTTTTCAGGGCCTTCCTGTGAAAGCTGCCAGCACACTGAAGGCTAGTTAAAGTGCCCTATTTTTCATTGAATTTCATCAGTTTGTGGGCAGTATGTATGATGTTTTAGACACAGTGGGTTTTGTGTTGTGCCCTGTGCTCTAGGCTGTCTGAGTGAAATGGTCACTGATTGATCTAGGCACAGCTCCAGGATGCCGGCATGTCCCAAAATCCACTTGGGGCCAACCTAGTCTTGGTATTTCCACCACCCCTGTTGTAAACTGGTTGTTTTAACCAcactttagtttttatttcCTCCGTGAAAGTGTAATATTGGTGTATGCTTCCAGTCATTTGGGGGAACTTTCTACAATGTAGAACTGAtgaatgtttacatttttaaaggtaACTACTGTTTGATAATGTTTAAGAAATACAAGCATTTGAGTGA

Function

NR:

description
PREDICTED: DNA replication factor Cdt1-like isoform X1

GO: NA

KEGG:

id description
K10727 CDT1; chromatin licensing and DNA replication factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039783843.1 True 2746 mRNA 0.50 10 29956720 29963090

Neighbor

gene id symbol gene type direction distance location
pcca pcca coding upstream 258577 29659412 ~ 29698143 (+)
LOC120548236 LOC103357099,LOC103387711 coding upstream 301669 29646723 ~ 29655051 (+)
LOC120547721 LOC103357097 coding upstream 323959 29628731 ~ 29632761 (+)
LOC120547808 NA coding upstream 398385 29557263 ~ 29558335 (+)
LOC120547961 LOC103372209,LOC104933668 coding upstream 1102497 28817833 ~ 28854223 (+)
nvl NA coding downstream 304698 30267788 ~ 30336160 (+)
sertad2b sertad2,LOC104932742 coding downstream 542964 30506054 ~ 30600609 (+)
slc1a4 slc1a4,LOC102791775 coding downstream 662540 30625630 ~ 30671184 (+)
LOC120548109 LOC102195401,LOC103353517,LOC102300597,LOC106939791 coding downstream 748483 30711573 ~ 31005023 (+)
ogfrl1 ogfrl1,LOC104917660,LOC103363704,LOC100701482 coding downstream 1220230 31183320 ~ 31198691 (+)
G197654 NA non-coding upstream 177669 29768476 ~ 29779051 (+)
G197636 NA non-coding upstream 246715 29708743 ~ 29710005 (+)
G197635 NA non-coding upstream 251707 29704087 ~ 29705013 (+)
G197571 NA non-coding upstream 485764 29470012 ~ 29470956 (+)
G197568 NA non-coding upstream 498284 29457418 ~ 29458436 (+)
G197679 NA non-coding downstream 6700 29969790 ~ 29977939 (+)
G197686 NA non-coding downstream 31491 29994581 ~ 30000931 (+)
G197695 NA non-coding downstream 101680 30064770 ~ 30066529 (+)
G197739 NA non-coding downstream 166795 30129885 ~ 30130223 (+)
LOC120547657 NA non-coding downstream 183733 30146823 ~ 30150716 (+)
LOC120547718 LOC102789565,LOC100690068,LOC101471749,LOC103357097 other upstream 337704 29518941 ~ 29619016 (+)
G197531 NA other upstream 606792 29348425 ~ 29349928 (+)
LOC120548242 ccdc85a,LOC104955469,LOC102783086,LOC102310250,LOC102209339,LOC100696856 other upstream 779226 29112688 ~ 29177494 (+)
ccnj ccnj,LOC102785723 other upstream 1654387 28294205 ~ 28302333 (+)
LOC120548047 adgra1,LOC103360772 other upstream 2175679 27554928 ~ 27781041 (+)
LOC120547658 NA other downstream 190421 30153511 ~ 30201820 (+)
G197999 NA other downstream 1271274 31234364 ~ 31234723 (+)
G198185 NA other downstream 2830198 32793288 ~ 32794661 (+)
G198245 rab1a,LOC104962072,LOC102231865 other downstream 2999298 32962388 ~ 32965074 (+)
slc2a15a LOC103367959,LOC104935160,LOC103476520,LOC106961144,LOC103155793 other downstream 3194639 33157729 ~ 33199862 (+)

Expression


Co-expression Network