LOC120547989 (LOC104967820,LOC107989005)


Basic Information

Item Value
gene id LOC120547989
gene name LOC104967820,LOC107989005
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 21479461 ~ 21482598 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039783861.1
TCTGCCAACAATGGCAGCCACTGTTACACAGCAACTGAATGAAGTGATGACTTTATGTGCTGACGTGGTCCAGCTCTTAACATCATCTGATTTAACCATACAAAATGACGGTCAAGAAACATTCAGCATTTTACACAACAAGCTGAACAAAGCCCAGAACAACACAAAGTATCTGGTGGAGTTTTCCACCTCATTGAAAGGACGAGTAGACCAATTGGAGGGACACTGTATCCTCTGGGGCCTGTCTATTCAGATTTTGCTGAACTCTCTTGATAAGATTTTGGGAACATCAACTGCAATGAACCAGTTGAGCCCTCAGAAACAGCTATCAGTGTTGTCTGAGAACTCGCTTCGAATTCAAGAGGCAGCAAGGCTAACCAGCCTGAATTGTAAAAGTGCATACAAATCAAAACAGTTAATAGGATACCAGGATGAACTAAAAACCCTGACTGAAGCCTATCTCAAAGCTGCCGAAGAGCTCGACATAACGCTAAGTGTGATGCAACTTGCAAAATCAGAATTCTTTCAGAGACATCTTTTGATTAAAATGAGAGTGCTTTCTGGTCATTTGAGCAAAGCAAATAAGGATTATGACACAGCACTTCAAAATATTGTCAGCATTGCTTATTTTGCTGCTGAACACTTTAGGAAGAACAACACAGATGACGCCGAGCAGAAATTTGATAATGCAGCTCAAACACTTTTTGAAAGTGTAAAACCTGCGACCGAAAGAGTCGAGGACTGCTTACACTTCATCCGCGACCCGCGTGCCCGTTCTAACCTGAGGTCTATCAACGACCACCTGTCTTTTCAGATCTCAGATATAATCAGCAGGGCGAGGCTCATGATAGAGACTCACTACATTTGTGACACACTCAGTCTGGATGTGCAGATACAGTGCTGGTCAGCAAAAGCTCACTATGTGGTGGAGGAGATCAGGAAGCAGGATGGGATTCACCTAGAGGCTAAAGCGCACATCATGGCTGGTCTACAGGGCAGAAGACCTGATGATATCAAAGAAGTGTTGGCTACAGTCCCATCTAATGTCAAAGAAGTAGAATTTCCCTCTGACAAGGCAATGACACCTTGGCAGAAAGGCAACACAGATGCTGCAGAACTAAATGTGAAGATGGTAGCTGTTGCCAAATATGGACCTGGAAATATGGAAAAATATGATGGTGTCCGGTCTGGCGCATACAAAGAGGCTCCTTCGCTGACCTACACAtccctttttttaaagcaagaaAGTGACAGCTGGGATCCCCAGGACAACAAAATTGTCCAGGTGACCAGGAAGATGGCTGACACACTATGTTACATGACTCAGTACTTGAGGAAGAAAGGCCCAATACCGaataaagAGGCATTTGTCAATGCAGCCAAAGATGTTATCTCAAACTGCCAGTCAGTAACTCAGTTTATCAGAGTTATTGCCAACCACTGCCTGGATAAACAGTGTACGGTTGAACTCTCCCTCATAGTGGAGCAGATTCTCACCATCACCAACCAGCTCAACATCATCTCCAGTGTCAATGCTGTAACACCTGGGTGCAAATCATCTGATGAGATCCTGGTGAAGAACACACAAAATCTACTGCAGACAGTCTTGCGTGGGGTCCATGCTGCAGAGACAgcctgcattacaGGTTTGAAGCAGCCTGAGCCAAACTCAGATGGTGCTGAGGCTACAGCCTTGTGTttccagtggaggaggaagctGGAGATCCATCGAGCCCAGCAGACCTCTAACCCAGAGACCGATGAGCTGGGTTTGAGGAAGACCTCATCCCACCCTGTAGCACCCAGTCTTGCCCCACCAGTTGGCTACAAGTAGGGTTGCAAAGGGTCGGAAACTTTCCGtggaaagtttagctggggaattttgaaaacattccaatttggaaactttcatgggaattaacgggaattAACAGGAATAAACTGgacatttttaatattgctttccATGTAAAGTTTAGCTTTGGAATTTTGGAACcattccaatttggaaactttcataAGAATTAATGGAATTTATGGGAATTTGGATGGGATGTAGTCCTTGGGCTCAAATGCAGTACTGTCTTCAATCTGTCTTCAATCTGCTGTAGAATGTTGGATTCTAGAAATGATCTGTGCAGTGGGTGTGGCCTCAGTAGCCCTGCAGTAGGCTAAGTAGTAGCCCAAACCATTGACCTTTAGTTTAACATATGAAGGTAGCTAGCATACTACCTTTGATTAATTACTATggctatggttatggttatatgCATGCTAAGGTAACCATCAGCGCTATCTATTTTTCCAGCCTATCAAGAACAagtgggctatacaattaacacacataggttaatagcaatgggttatgtattatgtagtagcctatgctgattactgcgtgcgtgcatgtcatTGACGAATATAGGGAGGACAttcaactgaagttgcattaaatgaggttgttttaaccaagattatgctgcaagatgtttttttttcaactacatTAAGCTGCCTGTTATAGACTAACAGTATTATAAcatgcaatattaaaaatattcagtttattcccattaattcccgttaattcctgttaattcccatggaaagtttccaactttgaaaattcccGGAATTTTGCAACACTAGCTACAAGTTACCACTACCCCTTCAAAACACAAAGTAGTATTTAGTTTCTCAAGAAATAAGAAGCCTGTTTTCTATTTGTTATAACAATATGAAACCCA

Function

NR:

description
PREDICTED: uncharacterized protein LOC104967820

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039783861.1 True 2747 mRNA 0.42 5 21479461 21482598

Neighbor

gene id symbol gene type direction distance location
itga9 itga9 coding upstream 5405 21423766 ~ 21474056 (+)
golga4 NA coding upstream 57348 21397072 ~ 21422113 (+)
lhcgr LOC103358126 coding upstream 232076 21231028 ~ 21247385 (+)
LOC120547712 nrxn1,LOC102793382,LOC103356500 coding upstream 374161 20839587 ~ 21105300 (+)
gpr75 gpr75 coding upstream 834291 20640833 ~ 20645170 (+)
LOC120547990 fbln7 coding downstream 10121 21492719 ~ 21506947 (+)
sft2d1 sft2d1 coding downstream 52345 21534943 ~ 21545927 (+)
prr18 prr18,LOC102776904 coding downstream 66063 21548661 ~ 21551787 (+)
si:ch211-130h14.4 NA coding downstream 68841 21551439 ~ 21564757 (+)
tbxtb t coding downstream 82785 21565383 ~ 21571046 (+)
G195578 NA non-coding upstream 187345 21291841 ~ 21292116 (+)
G195577 NA non-coding upstream 187720 21291513 ~ 21291741 (+)
G195575 foxn2 non-coding upstream 190251 21285431 ~ 21289210 (+)
G195570 NA non-coding upstream 199149 21278847 ~ 21280312 (+)
G195565 NA non-coding upstream 213798 21265285 ~ 21265663 (+)
G195634 zc3h6,LOC100704674,LOC102799538 non-coding downstream 4505 21487103 ~ 21487648 (+)
G195648 tmem87b non-coding downstream 30142 21512740 ~ 21514404 (+)
G195654 NA non-coding downstream 33160 21515758 ~ 21516441 (+)
G195650 NA non-coding downstream 63848 21546446 ~ 21547916 (+)
G195679 NA non-coding downstream 185017 21667615 ~ 21671475 (+)
fbxo11a fbxo11,LOC104951339 other upstream 146884 21318610 ~ 21332577 (+)
G195518 NA other upstream 725652 20752773 ~ 20753809 (+)
G195448 thbs2 other upstream 949146 20529767 ~ 20530315 (+)
adgrb3 adgrb3 other upstream 1322513 20041774 ~ 20156948 (+)
gfral NA other upstream 2049365 19426475 ~ 19430096 (+)
G195653 LOC102296834 other downstream 31928 21514526 ~ 21515128 (+)
kif16bb NA other downstream 672804 22155402 ~ 22184492 (+)
tasp1 tasp1 other downstream 1165316 22647914 ~ 22692604 (+)
disc1 disc1 other downstream 2079685 23562283 ~ 23611337 (+)
klhdc3 klhdc3 other downstream 2336316 23818914 ~ 23851605 (+)

Expression


Co-expression Network