fancl (fancl)


Basic Information

Item Value
gene id fancl
gene name fancl
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 32445087 ~ 32483666 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039783866.1
CGTGACGTCAgcggttttgttttttcatggcGGGATGCGGGGTGGTTTCAACGTCGACTTTGTCCTGACTGCGTCGTGGCTAAAACCGAGTGACTTCTCGTGATTTAACAGCTTTAATTGACGTATCTAAGTTCAAATGTTTGGTTCAGGCTGCCGAGttattaaaacaataataataattaaaagcGCTGCTAGTCTATCCTGTCAGGCTTGCTAAAGTTAGCTAAGGAAGCAGTCCTCCTGGTTTGACAGCTGGCTTAAAGTTTGACTATTGACGTTAAGATTAGTGCGATGGAGAGTCCATTGGTAAGAGACAACCCACTGCTTTTACCTTTCAACAAGGAGAAAACTATCTACGACGGCTTCATCACAGTCCAGGAACGGGACTTCAGATTGAGAATACTTCTCCCACCAGATCGCCAATTTAAACGGGCCAGGCTGCACTGCTGTTGGCAGTTAAAACACCTGTTGCATGGCTATGAGCACATAGTGAAGCAGAGGCTGCAGCAGTCGGCTGATCTTGTCAGTTTCATTCTGGAGCTGAAGACCATCTTGGAAGTGGGTCTGAAGAGCCATCGGGAGTGCCgctccatccctcctccacaGTATTACTCTCAGCTCATCTCTGAGATGGAGACCCTTGGGTGGGGCAAGCTGCTCTTCATAGACACAGAGTTCCGAACGTTGAGACTGAAGGCGGAGGACTCCTGTGGAAGGCAGCACGTTCTCACTATTAAACTCAAGTCTAAGCACCCTGCAGAGGCTCCTGAATGCTCAGCTGACCTGCCGGTCCCTCTGGCCATGACCTGGACTCCACAGAGTACTCTGGACCAGCTCCACAACCAGTTCCTGCTGGTTTTGGAGTCCCTCACCGAGTTTTGGGACGTCCTGGACGAGATTGACAGTAAGACCTGGATCCTGGAGCCGGAAAAAGCCAGCCGGTCCGACACTATGAGGCGGATCGCCATCGgaAACAACGTATCCATCAAAGTGGAGGTGGATCCCAGACACCCTAAGATGCTACCAGAGTGCTGCCTGCTGGGGGCCGAGCATGtgGTGACTCCGCTGAGGAATAAGCTGAACGCCAACATGCACTTGTGGAACCCGGACTGCAGCGTCTTGCACAACCTCCGGGATGTTTTGGAGATCGAATTCCCGTCACCTGCCACCCACGAAAAATCTagtTTCAGCGTTGAGTGTGGGATCTGTTACTCCTATCGTCTTGATGCTGCGATCCCTGATCAAGTGTGTAATGACCCTCGCTGTGGCCAGCCCTTCCACCAGGCCTGTCTGTatgagTGGCTGCGAGCGCTGCCCTCCAGCAGGCAGAGCTTCAACATTGTTTTTGGAGAGTGTCCTTACTGCAGCAAGcCTATTACTGTGAAAATGGCGGCCCAGAAGTGATGAGAAGTGGCTTTGTGTTCCTGTCGGCGGCCACCTCGACATTTGGGAAACGGCTTGAGAGACCATGCAGAAACTAGCAGACCCCACACACTGGCCA

Function

symbol description
fancl Predicted to enable ubiquitin protein ligase activity. Acts upstream of or within oocyte development. Predicted to be part of Fanconi anaemia nuclear complex. Predicted to be active in nucleus. Is expressed in central nervous system; eye; heart; intermediate cell mass of mesoderm; and reproductive system. Human ortholog(s) of this gene implicated in Fanconi anemia complementation group L. Orthologous to human FANCL (FA complementation group L).

NR:

description
serine/threonine-protein kinase VRK1-like

GO:

id name namespace
GO:0048599 oocyte development biological_process
GO:0016567 protein ubiquitination biological_process
GO:0006281 DNA repair biological_process
GO:0043240 Fanconi anaemia nuclear complex cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K10606 FANCL, PHF9; E3 ubiquitin-protein ligase FANCL

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039783866.1 True 1501 mRNA 0.52 14 32445087 32483666

Neighbor

gene id symbol gene type direction distance location
bcl11aa bcl11a,LOC103363701,LOC102779517 coding upstream 871466 31512864 ~ 31573621 (+)
LOC120547952 rims1,LOC102777706,LOC102298248 coding upstream 951867 31342959 ~ 31493220 (+)
ogfrl1 ogfrl1,LOC104917660,LOC103363704,LOC100701482 coding upstream 1246396 31183320 ~ 31198691 (+)
LOC120548109 LOC102195401,LOC103353517,LOC102300597,LOC106939791 coding upstream 1440064 30711573 ~ 31005023 (+)
slc1a4 slc1a4,LOC102791775 coding upstream 1773903 30625630 ~ 30671184 (+)
LOC120547814 NA coding downstream 173320 32656986 ~ 32659866 (+)
LOC120547622 NA coding downstream 178421 32662087 ~ 32666672 (+)
LOC120547668 LOC106676435,LOC106674820 coding downstream 295850 32779516 ~ 32783434 (+)
fgf8a fgf8,LOC104933818,LOC106515330,LOC108239148 coding downstream 767122 33250788 ~ 33258175 (+)
fbxw4 NA coding downstream 795306 33278972 ~ 33355371 (+)
G198100 NA non-coding upstream 2348 32442532 ~ 32442739 (+)
G198095 NA non-coding upstream 496162 31948621 ~ 31948925 (+)
G198091 NA non-coding upstream 516107 31928769 ~ 31928980 (+)
G198090 NA non-coding upstream 592473 31852290 ~ 31852614 (+)
G198089 NA non-coding upstream 696179 31748673 ~ 31748908 (+)
G198126 NA non-coding downstream 98054 32581720 ~ 32583279 (+)
G198134 NA non-coding downstream 129006 32612672 ~ 32613005 (+)
G198138 NA non-coding downstream 142507 32626173 ~ 32626511 (+)
LOC120548258 NA non-coding downstream 146648 32630314 ~ 32632849 (+)
G198147 NA non-coding downstream 156320 32639986 ~ 32640929 (+)
G197999 NA other upstream 1210364 31234364 ~ 31234723 (+)
LOC120547658 NA other upstream 2243267 30153511 ~ 30201820 (+)
LOC120547718 LOC102789565,LOC100690068,LOC101471749,LOC103357097 other upstream 2826071 29518941 ~ 29619016 (+)
G197531 NA other upstream 3095159 29348425 ~ 29349928 (+)
LOC120548242 ccdc85a,LOC104955469,LOC102783086,LOC102310250,LOC102209339,LOC100696856 other upstream 3267593 29112688 ~ 29177494 (+)
G198185 NA other downstream 309622 32793288 ~ 32794661 (+)
G198245 rab1a,LOC104962072,LOC102231865 other downstream 478722 32962388 ~ 32965074 (+)
slc2a15a LOC103367959,LOC104935160,LOC103476520,LOC106961144,LOC103155793 other downstream 674063 33157729 ~ 33199862 (+)
si:ch211-51a6.2 LOC104924867,LOC103357113,LOC100694100 other downstream 1497845 33981511 ~ 34008003 (+)
LOC120548523 NA other downstream 2411517 34895183 ~ 34948460 (+)

Expression


Co-expression Network