LOC120548038 (tuba1c,LOC108255233,LOC103148207,LOC108247626,LOC106920718,LOC101079871,LOC101066234)


Basic Information

Item Value
gene id LOC120548038
gene name tuba1c,LOC108255233,LOC103148207,LOC108247626,LOC106920718,LOC101079871,LOC101066234
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 28787046 ~ 28789905 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039783971.1
TTCTCTTTCGCCCTCGTAACAGCGAGGCCACGCCTAGCAACAGCACTATTATTTAAGCGCAGTTGTGAGAAATGACCGTTAAATCAACCTCCTCATTTTATTTCTAGTTTTGTTTGAATcgctgttgagtagtgtcagtTAAAATGCGTGAGTGTATCTCTGTCCACGTTGGTCAGGCTGGTGTCCAGATTGGCAATGCCTGCTGGGAGCTTTACTGCCTGGAACATGGGATCCAGCCGGACGGACAGATGCCCAGTGACAAGACTTGTGGAGGAGGAGATGATTCCTTCAACACCTTCTTCAGTGAGACTGGAGCTGGAAAGCACGTCCCCAGGGCTATTTTTGTGGACCTGGAGCCCACTGTCATCGATGAGGTGCGCACTGGGACCTACCGCCAGCTGTTCCACCCTGAGCAGCTGATCACTGGCAAGGAGGACGCTGCCAACAACTACGCCCGTGGACATTACACCATCGGCAAAGAGATCATCGACCTGGTGCTGGACAGGATCCGCAAGCTGGCTGACCAGTGCACTGGCCTTCAGGGCTTCCTGGTTTTCCACAGCTTTGGAGGTGGCACCGGCTCTGGTTTCACCTCCCTGCTGATGGAGCGTCTGTCTGTGGACTACGGAAAGAAGTCCAAGCTGGAGTTCGCCGTCTACCCAGCTCCCCAGGTATCCACGGCTGTGGTGGAGCCCTACAACGCCATCCTGACCACCCACACCACCCTGGAGCACTCCGACTGTGCCTTCATGGTGGACAACGAGGCCATATATGATATCTGCCGTAGGAACCTCGATATCGAGCGTCCTTCTTACACCAACCTGAACAGGTTGATCAGTCAGATTGTGTCCTCCGTCACTGCCTCCCTTCGTTTTGACGGTGCCCTCAATGTTGATCTGACAGAGTTCCAGACCAACTTGGTGCCATATCCCCGTATCCACTTCCCTCTGGCCACCTATGCCCCTGTCATCTCTGCTGAGAAGGCTTACCATGAGCAGCTCTCAGTGGCAGAAATCACAAACGCCTGCTTCGAACCAGCCAATCAGCTGGTTAAATGTGACCCTCGCCACGGCAAATACATGGCCTGCTGCCTTTTGTATCGTGGTGACGTGGTTCCCAAAGATGTGAATGCCGCCATTGCCACTATCAAGACCAAGCGCTCCATCCAGTTTGTGGACTGGTGCCCCACTGGTTTCAAGGTGGGCATCAACTACCAGCCGCCCACTGTAGTTCCTGGTGGAGACCTGGCCAAGGTCCAGAGGGCTGTGTGCATGCTGAGCAACACCACTGCTATTGCAGAGGCCTGGGCTCGACTTGACCACAAGTTTGATCTGATGTACGCCAAGCGTGCCTTTGTTCACTGGTATGTGGGCGaagggatggaggagggagagtTCTCTGAGGCTAGAGAAGACATGGCAGCCCTGGAGAAGGATTATGAGGAGGTTGGAGTCGACTCTAttgagggggagggagaggaggaaggagaggagtactaatgataaataaatctgagTTAGGTGTCATTCCTTACAGGAGTACAAtagattgcttgttttgttgattttaacctTTTCTGAATTCTAAATGTATTGCTGTAGTTGTATTTGCCTTTTGTGtactggtatgtgtgtgtgagggtatGGAGGAGGGGGAGTTCTCTGAGACCAGTGAGGATATGGCAGTTCTGGAGAAGCATTAGGACGAGGAAGATGTAGTATAGTATTAAACAGGCATGCATTCCTTTTTGTGATATTTTAATGTCTAAAAATAAAGTTTGTTTATTGACTGAA

Function

symbol description
tuba1c Predicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Predicted to be involved in microtubule cytoskeleton organization and mitotic cell cycle. Predicted to act upstream of or within microtubule-based process. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm and microtubule. Is expressed in central nervous system; forebrain; nervous system; neurons; and peripheral nervous system. Orthologous to several human genes including TUBA1B (tubulin alpha 1b).

NR:

description
PREDICTED: tubulin alpha-1A chain-like

GO: NA

KEGG:

id description
K07374 TUBA; tubulin alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039783971.1 True 1793 mRNA 0.51 4 28787046 28789905

Neighbor

gene id symbol gene type direction distance location
LOC120547521 nanp coding upstream 16967 28764397 ~ 28770079 (+)
LOC120547955 rmdn2 coding upstream 100978 28635328 ~ 28686068 (+)
LOC120547570 kmo coding upstream 278606 28487523 ~ 28508440 (+)
march5 march5 coding upstream 339252 28412266 ~ 28447794 (+)
btaf1 btaf1 coding upstream 436059 28320747 ~ 28350987 (+)
si:dkey-187a12.4 LOC104933667,LOC104950525 coding downstream 879 28790784 ~ 28801376 (+)
LOC120547961 LOC103372209,LOC104933668 coding downstream 27928 28817833 ~ 28854223 (+)
LOC120547808 NA coding downstream 767358 29557263 ~ 29558335 (+)
LOC120547721 LOC103357097 coding downstream 838826 29628731 ~ 29632761 (+)
LOC120548236 LOC103357099,LOC103387711 coding downstream 856818 29646723 ~ 29655051 (+)
G197409 NA non-coding upstream 79841 28706883 ~ 28707205 (+)
G197378 NA non-coding upstream 276569 28508978 ~ 28510477 (+)
G197299 ide,LOC104941703,LOC102291663 non-coding upstream 312129 28465146 ~ 28474917 (+)
G197287 NA non-coding upstream 335037 28449580 ~ 28452009 (+)
LOC120548567 NA non-coding upstream 375563 28409470 ~ 28411483 (+)
G197439 NA non-coding downstream 77397 28867302 ~ 28867503 (+)
G197441 NA non-coding downstream 84273 28874178 ~ 28874530 (+)
G197446 LOC100696947,LOC101488034,LOC102786940,LOC102291530 non-coding downstream 99563 28889468 ~ 28891827 (+)
G197514 NA non-coding downstream 415363 29205268 ~ 29205577 (+)
G197525 NA non-coding downstream 503613 29293518 ~ 29294176 (+)
ccnj ccnj,LOC102785723 other upstream 484713 28294205 ~ 28302333 (+)
LOC120548047 adgra1,LOC103360772 other upstream 1006005 27554928 ~ 27781041 (+)
LOC120548261 LOC102312438,LOC102207415,LOC101470427 other upstream 1275454 27451950 ~ 27511592 (+)
LOC120547882 inpp5a other upstream 1677906 26926418 ~ 27109140 (+)
pwwp2b pwwp2b other upstream 1833241 26874215 ~ 26953805 (+)
LOC120548242 ccdc85a,LOC104955469,LOC102783086,LOC102310250,LOC102209339,LOC100696856 other downstream 322783 29112688 ~ 29177494 (+)
G197531 NA other downstream 558520 29348425 ~ 29349928 (+)
LOC120547718 LOC102789565,LOC100690068,LOC101471749,LOC103357097 other downstream 729036 29518941 ~ 29619016 (+)
LOC120547658 NA other downstream 1363606 30153511 ~ 30201820 (+)
G197999 NA other downstream 2444459 31234364 ~ 31234723 (+)

Expression


Co-expression Network