LOC120548053 (LOC103353497,LOC102790632,LOC102299158,LOC102194143,LOC101482614,LOC100706574)


Basic Information

Item Value
gene id LOC120548053
gene name LOC103353497,LOC102790632,LOC102299158,LOC102194143,LOC101482614,LOC100706574
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 25817251 ~ 25826429 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039784000.1
TAAGCCCCTTAGTTTTATCTCTGACTTCAGCAAAGATGAGTCACGGAGACCGTTACACCTCGTCGTCCTACCGGAAGATTTTCGGGGATTCTCCCAAGTTCCCCGTGTCCTCCTCTCGCATGGGCAGCGCCTCTCACCGGGGCTCCCCGGGGCTCAGGTCCATGGCTGGCTCCCGCAACAGCGGGTCCTCCCTGAGCCTGTACAGACGGATCGGTCGCTCCACCTCTTATTCTCCGGTACCCAGCGACTCCCTAGACTTGACCCAGACCTCCGTGGTCAACAATGAATTCAAAGTTATTCGAACTAACGAGAAGGAGCAGCTGCAGGGTCTGAATGACCGCTTCGCCGTGTTCATTGATAAAGTGCGCCACTTGGAGCAGCAGAATAAGGTGTTGGAGATGGAGCTGGTGTCACTGCGGCAGAAGCAGGGCGAGCCGTCCCGTGTGGCTCATCTCTACCAGCAGGAGCTGATAGAACTGCGCTCGCAGGTGGATGAGCTGAGCCGGGACAAAAACCGCATCCTGATCGAGAGGAACAACATGGAGGACGAGCTGCAGAAGCTCAGTGTGAAGTATGATGAGGAGATGAGGGTACGGGAGGAAGCTGAGCAGACCTTGAGGTCCTTCCGGAAGGATGTGGATGACGCCACAGCCGTTCGCCTGGACCTGGAGCGCCGTGTGGAGTCACTGATGGATGAAATCTCCTTCCTGAGGAAAGTACACGATGAGGAAATCCACGAGCTGAGCAGCATGATGGAGGAGCAGCATGTCTCCGTGGAGCTCGAACCCGCCAAACCGGACCTCACCTCGGCTCTGAAGGAGATCCGCAACCAGTACGAGTCCATCGCCTCCAAAAACCTGCAGTCTGCCGAGGAGTGGTACAAGAGCAAGTTTGCCAGCCTCAGCGAGCAGGCCGCCAGGACCAACGAGGCCATGCGGGCTAGCAGGGAGGAGATCAGTGAGTTCAGGAGGCAGCTGCAGTCCAAGACGATTGAGATAGAGTCCCTGAGGAGCGCCAACGAGTCTTTGGAGAGGCAGATCACAGAGATGGAGGACGCACACAACGCTGAAGTCACAGCCATGCAGGACACTATTGGCCATCTGGATACTGAGCTGAGGAACATGAAGGGTGAGATGGCCCAGCACCTGAGAGAGTATCAAGACCTGCTCAATGTCAAGATGGCCCTGGATATAGAGATAGCTGCCTACAGGAAACTGCTGGAGGGGGAGGAGACTCACTTTAACTCAGGGATATCCTTTGGTGCTGCCAGCTACAGCTACCAGCCTCGAGCGTCAGCGTCCAGGAGCAgccagagggagaaagagggggccACCAAGGAAAGCTTCAAGGAGAGCAGTGAGGATAAAGATGAGGCAGACATCAACTCCAACAACTGAAGGAAGACAGGCAGGGAAATCTGGAAAGTGGGAAAAGAGATACGCCgtatatgtatagtatagtGAGTTCATAGTCACATACCGTATTTGTTAAGTGCAACGCTAAGACGTTGTGGAATTAGAGCTGGGTGATTAGCAACATCTTGTAGCTGAAACGTTCTTCTAATAAATACAACATTGGATGTTTTTCCTGGGACATTGGTCTcagcataggcgccgatttatgttttcctccgtgggtgctcacaggcgcacgccctttaaaaaaataaaataaataagtagtCAAAagatgtttgcatttcagaaccttaggaaatggacagtagccgacacaaacacacacacgcctattgACTCGAAAATAAAGCCATAAAGTAGGCTATATTTCAACTCAGGACatcgccacttctcacaaatacagataggattggagatgagaagtttaactgacacataaccgcgatcagctttgtgggaaattaagaatcaatgccacctgTCTAGTAGCCTAGGCCTAAACATGAATTAGTAGACCTGGGCCTGGCTATCGAAACGAACTGGATTAACAGAGATTCATTCTACCAGACCTTAAAAAACTCTGCATCTTTCTAAACAGTTGCATAACTAAAGAAGGTGTAAAACaagggtaaatattggagatgcattGTGCGCTAAGTGGGGGGATGGAGGGGGGGTCACTAAAAGAGGTCACAGagatcacactatgacagacgctccacttagcaccaactgcaatgtttaattttaaatgaagtctggcACAcatgggtgctcagtattttccatGGGTActcgagctccggagcacccacggtatcagCGCCTATGGGTCTCAGCATTTAGATGATCTTTGGACTCCTCTAAGCtttgtttcatttatttcacaCGTCATTATTGtataattaaaatacaatttcagaaGGTACAATGATCATATGTAGGCCACGTGAAATGGGGATCCCCAAACAAGCAACTAAAAGCTTTTTGGAGGGGGCCCAAGCAAACATTCAACACTTCCTACCAAAGGAAAATGACCTGAAAATCTGTACTGTACGTCCCTATAGGAAATAAACATGTtgcatatataaataataaaaaatatgtgaCCAGGTATTGAATGTTCTGGGGATGGATTCTCATTTTGCTGCTGATGAGATTGCACTGAAACCTGTCTGGATTGCTCAGATTGAGTCTTCATTTCTTAAAAGAAAGACACCAAATGTTTGTGTAGTTCCACTTCTGTTGTTGCAGCATCCTTTCAATGAACTTGTGCTATGAAGTTAGTCAAGACTATATCAGCTGTTAAATTTGATGTCCTTAACGTTTTCTAAGTTTTAGTTTTAACGTGAGAGAGGTAAGGTTCAAAGTGTATAGCAACAGTCACTCTATACGTATTAAAGCACTTTAGGGTGTATGGAGGACAGCAGTGTTTTGCATTGTTTGGTTGTATGGTATGACATTACAACGGTTGGTTCACATGGTTTATTACGATGTACATAATGCATTAGCTGTGAAAAACATTCAGAAAATGCAGTCCAACTGGTAGTACATATCATCTCACCTGGCTGCAGTGTCAATGTATACAACTAGTGGAAAACCACTCACTGTTGGTTTagttgcactgaataacgcaatgaataaaatgacaaattgaCTGAC
>XR_005637133.1
TAAGCCCCTTAGTTTTATCTCTGACTTCAGCAAAGATGAGTCACGGAGACCGTTACACCTCGTCGTCCTACCGGAAGATTTTCGGGGATTCTCCCAAGTTCCCCGTGTCCTCCTCTCGCATGGGCAGCGCCTCTCACCGGGGCTCCCCGGGGCTCAGGTCCATGGCTGGCTCCCGCAACAGCGGGTCCTCCCTGAGCCTGTACAGACGGATCGGTCGCTCCACCTCTTATTCTCCGGTACCCAGCGACTCCCTAGACTTGACCCAGACCTCCGTGGTCAACAATGAATTCAAAGTTATTCGAACTAACGAGAAGGAGCAGCTGCAGGGTCTGAATGACCGCTTCGCCGTGTTCATTGATAAAGTGCGCCACTTGGAGCAGCAGAATAAGGTGTTGGAGATGGAGCTGGTGTCACTGCGGCAGAAGCAGGGCGAGCCGTCCCGTGTGGCTCATCTCTACCAGCAGGAGCTGATAGAACTGCGCTCGCAGGTGGATGAGCTGAGCCGGGACAAAAACCGCATCCTGATCGAGAGGAACAACATGGAGGACGAGCTGCAGAAGCTCAGTGTGAAGTATGATGAGGAGATGAGGGTACGGGAGGAAGCTGAGCAGACCTTGAGGTCCTTCCGGAAGGATGTGGATGACGCCACAGCCGTTCGCCTGGACCTGGAGCGCCGTGTGGAGTCACTGATGGATGAAATCTCCTTCCTGAGGAAAGTACACGATGAGGAAATCCACGAGCTGAGCAGCATGATGGAGGAGCAGCATGTCTCCGTGGAGCTCGAACCCGCCAAACCGGACCTCACCTCGGCTCTGAAGGAGATCCGCAACCAGTACGAGTCCATCGCCTCCAAAAACCTGCAGTCTGCCGAGGAGTGGTACAAGAGCAAGTTTGCCAGCCTCAGCGAGCAGGCCGCCAGGACCAACGAGGCCATGCGGGCTAGCAGGGAGGAGATCAGTGAGTTCAGGAGGCAGCTGCAGTCCAAGACGATTGAGATAGAGTCCCTGAGGAGCGCCAACGAGTCTTTGGAGAGGCAGATCACAGAGATGGAGGACGCACACAACGCTGAAGTCACAGCCATGCAGGCAGATTTTCTCATTTACCTCTTCTGGACACTATTGGCCATCTGGATACTGAGCTGAGGAACATGAAGGGTGAGATGGCCCAGCACCTGAGAGAGTATCAAGACCTGCTCAATGTCAAGATGGCCCTGGATATAGAGATAGCTGCCTACAGGAAACTGCTGGAGGGGGAGGAGACTCACTTTAACTCAGGGATATCCTTTGGTGCTGCCAGCTACAGCTACCAGCCTCGAGCGTCAGCGTCCAGGAGCAgccagagggagaaagagggg

Function

NR:

description
PREDICTED: alpha-internexin-like

GO:

id name namespace
GO:0005882 intermediate filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K07608 NF66, INA; internexin neuronal intermediate filament protein, alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039784000.1 True 3080 mRNA 0.47 5 25817251 25826429
XR_005637133.1 False 1354 transcript 0.56 5 25817251 25824677

Neighbor

gene id symbol gene type direction distance location
ttl ttl coding upstream 39208 25769647 ~ 25778043 (+)
ikzf1 ikzf1,LOC102780616 coding upstream 58933 25740125 ~ 25758318 (+)
LOC120548498 NA coding upstream 82536 25722609 ~ 25734715 (+)
vwc2 vwc2 coding upstream 110009 25678195 ~ 25707242 (+)
dennd10 fam45a coding upstream 206733 25605466 ~ 25610518 (+)
xpo1b xpo1,LOC104925896,LOC103353500,LOC102296990,LOC103154927,LOC101480205,LOC106952069,LOC103477318 coding downstream 34402 25860831 ~ 25888074 (+)
haao haao coding downstream 135926 25962355 ~ 25969516 (+)
hcar1-3 NA coding downstream 151028 25977457 ~ 25980437 (+)
trnai-uau_2 NA coding downstream 156316 25982745 ~ 25982838 (+)
plekhh2 plekhh2 coding downstream 588095 26414524 ~ 26476727 (+)
G196788 NA non-coding upstream 4810 25812215 ~ 25812441 (+)
G196782 NA non-coding upstream 22843 25779526 ~ 25794408 (+)
LOC120548233 NA non-coding upstream 232674 25501529 ~ 25584577 (+)
G196696 NA non-coding upstream 317971 25496668 ~ 25499280 (+)
G196690 NA non-coding upstream 383355 25427643 ~ 25433896 (+)
G196841 pex13 non-coding downstream 78291 25904720 ~ 25907869 (+)
G196836 NA non-coding downstream 85332 25911761 ~ 25939959 (+)
G196898 NA non-coding downstream 164039 25990468 ~ 25992621 (+)
LOC120547661 NA non-coding downstream 197491 26023920 ~ 26069456 (+)
G196921 NA non-coding downstream 274063 26100492 ~ 26101022 (+)
zgc:110045 LOC102779765,LOC102305383,LOC100704767,LOC101482925,LOC102197868 other upstream 142345 25594496 ~ 25674906 (+)
prdx3 prdx3 other upstream 196576 25613407 ~ 25620675 (+)
LOC120548229 rab11fip2 other upstream 321746 25481831 ~ 25495505 (+)
cacul1 cacul1,LOC103374658,LOC102794354 other upstream 672997 25139047 ~ 25144254 (+)
dact2 dact2,LOC103391347 other upstream 804002 25008474 ~ 25013249 (+)
stpg4 LOC103353520,LOC101467386,LOC102793681,LOC102299197 other downstream 708855 26535284 ~ 26548760 (+)
G197053 NA other downstream 836730 26663159 ~ 26663785 (+)
tmem254 NA other downstream 899287 26725716 ~ 26735787 (+)
pwwp2b pwwp2b other downstream 1047786 26874215 ~ 26953805 (+)
LOC120547882 inpp5a other downstream 1099989 26926418 ~ 27109140 (+)

Expression


Co-expression Network