jag1b (jag1,LOC102209890)


Basic Information

Item Value
gene id jag1b
gene name jag1,LOC102209890
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 22894831 ~ 22920312 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039784018.1
AGCCCAGGCcagcagtcagtcagtcagtcagtcagtcagcagTGGGCTCGGCTGCCGCATGGCCACTGTGTAAACTTTCTTCAACAATAAGGGGAAACTGTCGGATAACGAAGAAGAGCAGACGCTCGGAGAGTTTGAGGAACATAATAGGAAGAGGTCTTCTATGAATCGGGAACCTGTGCTCCGCTGATCAAAGTGTTGTTTCCCACTCGTGCATGTTTTAACCAGAGGAGAGCTCTGGTGCCGTGTGTCGGCCAGACGACGACTAACAAACGAGTGGCAACAGCAGTCCGGAGGCATGATTTTGAGACGGGGCTCAGTCGTTGTTGCCTTTTTACTCTGCTTTCTGGCGAAGGTGTCGGAGGGAACGGGACAATTCGAGTTGCAAATCTTATCGATGCACAATGTTAACGGAGAGTTGCTGAACGGCATGTGTTGTGATGGCACACGGAACACGGCGGATAGAAAATGCACACGGGACGAGTGCGATACGTTTTTCAGAGTTTGCCTGAAGGAATACCAGTCGAGAGTTTCTGCTGCAGGGCCCTGCAGCTTCGGATTGGGAGCTACGACTGTCCTCGGAGGGAATACCTTTTCTTTCAAGAGCTCTGTCAGGAATGACAAATCCAGGATAGTATTGCCCTTCAGTTTTGCCTGGCCGAGGTCCTACACTTTGATAGTGGAAGCCATGGACTGGAGCAATGAAACCAGTGATTGGAAGTTGATAGAGAAAGCCTCTCATTCGGGCATGATCAACCCCAGCCCACATTGGCAGAAGCTGACTCACAACGGCCCCGTAGCCCAGTTTGAGTACCAGATCCGGGTCAGCTGTGATGAGCACTACTACGGCTTTGGCTGCAACAAGTTTTGTCGGCCCAGGGATGAGTTCTTCGGGCATTACACATGCGACTACAATGGAAACAAGACCTGTTTGGAAGGCTGGTCCGGACCTGACTGCAACACAGCAATATGTCGACAAGGCTGCAGCACTGAACATGGATCATGTAAGGAGCCAGGTGGATGCAAGTGTCTGTATGGCTGGCAGGGCCAGTACTGTGACAAGTGCATCCCCCACCCTGGCTGTGTACATGGCACCTGTGGAGAGCCCTGGCAGTGCCTGTGCGACACCAACTGGGGCGGCCACCTTTGCGATAAAGACCTGAACTACTGTGGTACTCACCAGCCATGCCTTAATGGAGGGACATGTATCAACACAGGGCCTGACAAGTACCAGTGTACCTGCGCTGAGGGCTACTCTGGTGCCAACTGTGAGAGAGCGGAACATGCCTGTCTGTCCAATCCATGCTCTAATGGAGGGAGCTGTTCAGAAACCAGTCAAGGCTACGAATGTCAGTGTGCGCCAGGCTGGAGCGGCCCCTCCTGCACTATCAATGTTGACGACTGCGCTCCAAACCCCTGCAATCACGGTGGAACCTGCCAGGATATGGTCAACGGTTTCAAGTGTCACTGTCCTTCACAGTGGACGGGGAAGACATGTCTGATAGaTGCCAACGAATGCGAGAGCAAGCCTTGTGTCAATGCCAACTCATGCCGCAACCTGATTGGTGGATACTTCTGCGAGTGCATCCCTGGTTGGATGGGGCAGAACTGCGACATTAATATAAACGACTGCAAGGACCAGTGCCAGAATGGGGGAACTTGCAAGgaCTTGGTAAATGGCTATCGTTGCGTGTGTCCCCCTGGCTTTGCCGGCGAGCACTGTGAGAGAGACCTCGACGAGTGTGCGAGCGCACCGTGCCTGAACGGCGGCCGCTGTCAGGACGAAGTTAATGGCTTCCAGTGCCTGTGTCTGGCTGGTTTTTCAGGAAATCTCTGCCAGCTGGATATCGATTACTGCTCCCCCAACCCGTGTCAGAATGGAGCGCCTTGCTTCAACCTGGCCACAGACTACTACTGCGCTTGCTCAGAGGACTACGAGGGCAAAAACTGCTCTCACCTCAAAGACCACTGTCGCACCACCATGTGTAAAGTGATTGACAGCTGCACAGTTTCCGTGGCGTCCAACAGCACGCCGGGAGGGGAGCGCTACATTTCGTCAAATGTGTGTGGACCTCACGGCCGCTGCCGGAGCCAGGCCGGGGGCCAGTTCAGCTGCGAGTGCCAGGAGGGCTTCAGAGGCACCTACTGCCACGAGAATATCAACGACTGCGAGAGTAACCCATGCCGCAACGGAGGCACCTGCATCGACAAAGTCAGCGTGTACCAGTGCATCTGCGGCGACGGTTGGGAGGGCGACCACTGCGAGATCAACATCGATGACTGCAGCACCAACCCCTGTCATAATGGAGGGACATGTCGAGACCTGGTGACTGATTTCTTCTGTGAATGCAAGAATGGCTGGAAGGGAAAAACGTGCCACTCCCGGGAAAGTCAATGCGATGAAGCCACATGTAACAACGGAGGCACCTGCCACGACGAGGGCGACACGTTCCAATGCAAGTGTTCCCCAGGGTGGGAGGGTACGACGTGTAACATAGccAAAAACTCAAGTTGTCTTCCAAACCCGTGTGAGAATGGAGGTACCTGCGTGGTGACTGGGGAGTCGTTTACCTGCGTCTGCAAGGAAGGCTGGGAGGGTCCCACGTGCACCCAGAatACCAACGACTGCAGTCCCCACCCATGCTACAACAGCGGAACCTGCGTTGACGGGGATAACTGGTACCGCTGCGAGTGCGCCCCAGGCTTCGCTGGTCCAGACTGTCGGATCAatATTAATGAGTGCCAGTCCTCTCCATGTGCCTTTGGATCCATCTGTGTGGATGAGATCAACGGATATCGTTGCGTGTGTCCACCAGACAGGACTGGACCCCACTGTCAAGAAGTGACAAGAAGACCTTGCTCGGTCAATGGACACGTCACCCCTGATGGACTCAAATGGGATGAAGACTGCAACACTTGCCACTGTTCTAATGGGAAAGTTGTGTGCACAAAGATGTGGTGTGGCCCTACATCATGCCACCTGGGTGCCAAAGGTCGAGGCGGGTGTCCCTCAGGCCAGAGCTGCATCCCCATCAGGGAGGGCCACTGCTTTGTGAAGCCCTGCCTCGGGCTCGGAGAGTGCTGGCGCTCCAACCCTCCCCCGCGTCCCACCAAATGCCACCCCAGCTCCAGTTACCAGGACAACAGCTGCGCCAACATCACCTTCACCTTCAACAAGGAGACCATGCCTCCAAGCTTGACTGTGGAGGATGTGTGTAAGCAGCTGAGGCGCTTGTACGTAGTGAAGAATTTCTCCTTGGAGCATTCTGTGTCCATAACCTGTGACCCCTCATTCTCAGCCAGCAACGAAATCCACGTCTGCATCTCCACGGAGGACCATCGTTTGGACCGGAGCCCCATTAAAGAGATCACAGACCGGATAATCGACCTGGTTAGCAAACGCAACGGGAACAACACCATAATCACCGCCATCGCAGAAGTGCGCGTGCCAAGCCCCAGCAAAACTGGTATGAACCGCCTCCAAACTCTTGTTGTTGCCTGTGCTTTTTCCCAGACTTGCACACACAGTGGGTGGGAGGATttggcattttttatttttttttaagaagatCAGATTAGATCGAGCCAAGCCCTGAATATGACAGCAACGCCAAGCAC

Function

symbol description
jag1 Enables Notch binding activity and phospholipid binding activity. Involved in several processes, including circulatory system development; negative regulation of cell adhesion; and neuronal stem cell population maintenance. Located in plasma membrane. Colocalizes with membrane. Implicated in Alagille syndrome; congenital heart disease; multiple sclerosis; and tetralogy of Fallot. Biomarker of hepatocellular carcinoma; multiple sclerosis; osteoarthritis; and temporal arteritis.

NR:

description
protein jagged-1b-like

GO:

id name namespace
GO:0007219 Notch signaling pathway biological_process
GO:0007275 multicellular organism development biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005112 Notch binding molecular_function
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K06052 JAG1, CD339; jagged-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039784018.1 True 3618 mRNA 0.54 25 22894831 22920312

Neighbor

gene id symbol gene type direction distance location
flrt3 flrt3 coding upstream 331127 22553006 ~ 22563704 (+)
ephx5 ephx1,LOC103358491,LOC102206915 coding upstream 741505 22149948 ~ 22153326 (+)
mgme1 mgme1,LOC102788050 coding upstream 761311 22131121 ~ 22133520 (+)
cfl1l NA coding upstream 792964 22099306 ~ 22101867 (+)
LOC120547561 LOC103358480,LOC103387545,LOC101064754,LOC103134145,LOC108234077,LOC106959257 coding upstream 800608 22088107 ~ 22094223 (+)
mkks mkks coding downstream 38997 22959309 ~ 22963954 (+)
spast spast,LOC103374668 coding downstream 57840 22978152 ~ 22982603 (+)
LOC120547567 LOC104953149,LOC103387627,LOC103374175 coding downstream 81692 23002004 ~ 23009219 (+)
vit vit coding downstream 91077 23011389 ~ 23032132 (+)
gpatch11 gpatch11,LOC102790129,LOC102788696 coding downstream 160667 23080979 ~ 23083906 (+)
LOC120547852 NA non-coding upstream 128178 22723027 ~ 22766653 (+)
G195941 NA non-coding upstream 185258 22708936 ~ 22709573 (+)
G195915 NA non-coding upstream 253907 22635738 ~ 22640924 (+)
LOC120547767 NA non-coding upstream 644986 22211142 ~ 22249845 (+)
G195881 NA non-coding upstream 748039 22146303 ~ 22146792 (+)
G195964 NA non-coding downstream 863 22921175 ~ 22921899 (+)
G195968 NA non-coding downstream 2464 22922776 ~ 22924662 (+)
G195973 NA non-coding downstream 43655 22963967 ~ 22964130 (+)
G196016 NA non-coding downstream 69372 22989684 ~ 22989890 (+)
G196017 NA non-coding downstream 70121 22990433 ~ 22990702 (+)
tasp1 tasp1 other upstream 202227 22647914 ~ 22692604 (+)
kif16bb NA other upstream 710339 22155402 ~ 22184492 (+)
G195653 LOC102296834 other upstream 1379703 21514526 ~ 21515128 (+)
fbxo11a fbxo11,LOC104951339 other upstream 1562254 21318610 ~ 21332577 (+)
G195518 NA other upstream 2141022 20752773 ~ 20753809 (+)
disc1 disc1 other downstream 641971 23562283 ~ 23611337 (+)
klhdc3 klhdc3 other downstream 898602 23818914 ~ 23851605 (+)
LOC120547848 LOC103369904,LOC106907288,LOC107081732 other downstream 1437614 24357926 ~ 24367599 (+)
LOC120548495 ate1 other downstream 1447642 24367954 ~ 24426502 (+)
G196439 wdr11 other downstream 1644238 24564550 ~ 24569167 (+)

Expression


Co-expression Network