itga9 (itga9)


Basic Information

Item Value
gene id itga9
gene name itga9
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 21423766 ~ 21474056 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039784109.1
ACGACAGGGAGCCTGCGAGCAACAACTTTCCTGACACAGAATGGAGAGAAGCTGACGCACCGTTATTTACCGGACCGTTAACTTCCCTCCTCAAGCTTTTCCTTATGCCATCACAGCGTTCATGCTGCGCCAGACCAggaaaaaaataactgaaaGATAGTGTTGTTACAGTTTGAACACTGAAGAGCTGACAAttcctcctttttgttttttcccctttcttcttcttcttctttttggacACTTTAACCGCGTTATTACGCATGGTGCGCAAAGGGATGGCTCCTCTTCGCAGACACAAAACGGGAGTACAACATGTTTTTTATGTCTATCTCTCTATTTCAGTGGCTTATTCTTACAATATAGACTTAGAACATCCTTTGGTGTTCCGCGGACCAAATTCTAGTTTTTTTGGCTATTCTGTTCTGGAGCATTATCATGACAACACACGCTGGGTAATAGTGGGTGCTCCAAAGGCAAACTCTACCTACAGCAGCTCTGTGCACTCTCCTGGAGCTGTATATAAGTGTCGAGTTCACAGCAACCCAGAGCGCCGCTGCACGGAGATGGATCTGGGAAGAGGAAACAAGCCGAGAGAGTCGTGTGGGAAGACTTGCCAAGGAGACAGGGATGATGAGTGGATGGGGGTCAGTCTGGCCCGCCAGGACAGAGCCAACGGCAAAATACTGGCCTGTGCTCACCGCTGGAAAAACGTGTACTACGACTCCGAGCATATCCTTCCACATGGATACTGCTCCATCATTCCTCCCACTCTTCAGGGCAGGACAAAGCCGCTCATCCCTTGTTATGAAGACTATAAGCAAAAGTATGGGGAAGAGCACGGCTCGTGCCAAGCCGGGATAGCGGGAGTTTTTACGGAGGAGCTGGTGGTGATGGGGGCACCGGGGTCATACTACTGGACTGGGACGATCAAGGTGTACAACCTGACTTCTGACTCTTTCTACAACCTGAACAAAGAAGACGTCGACTCACACAGATACAGCTACCTTGGCTATGCTGTGACTGCTGGACACTTCTCCTCTCCTAATGTGATAGACATAGCTGCAGGGGCGCCTCAGCACAGCGGCAGTGGAAAAgtttacattttcaaaatcgATGGTGTGTCTTTGGTGAAGAGTTTTCAGGCCTCAGGGAAAATGATGGGCTCTTACTTTGGCTCCTCATTGTGTGCAGTTGATCTGAACCAGGATGGCTTGTCGGACCTGCTGGTGGGGGCACCCATGCACAGCCAGCTCCGGGATGAGGGCCAGGTGTCTGTGTACCTCAGCAAGGGCAATGGGGTGATGGAGGAGGGAGGTGTTTTGACTGGTGACAATGCTTTCAATGCACACTTTGGAGAATGCATTGCCGCAATCGGAGACATAGATGACGATGGATATCAAGATGTAGCCATAGGAGCACCAAAAGAGGATGAATATGGAGGAGCCGTTTATATCTACCATGGGGATGCCACAGGAATCATCAGCAAATACTCCATGAAACTGTCCGGGCGCAGTATAAACCCTGGTCTGCAGATGTTTGGCCAGTCAATCTCAGGCAATGTGGACATGGATGGCAATGGATACGCAGATGTCACTATTGGAGCTTTCATGTCAGATAGTGTGGTGCTGTTGAGGACCCGGCCTGTCATTACCGTGGATGTCTCCATCTTCCTGCCCGTCTCCATCAACATCTCTGTGCCGCAGTGCCACGAGGGCCACCAGAACCTAAATTGCTTCAACATCACTGTCTGCATGCGCTTCCGGGGCAGACAGCTGCCTGGACACATAGAGTTGCTGTATAACTTGACAGCTGATGTGGATAAGCGACAGAAGAGCCAGCCTTCCCGGGTCTACTTCACTCAAAGTGGATCTCAGATCAGCCAGATGAGCCAGCAGCTCAGCTTGGACATCAACAGGGAGCAGTGCCAGCGCTACACTGCCTACGTTAAGAAAGATGTGAAGGACGTGTTCACAGCCATCACGTTCGAGGTGGCTTACAGCCTGGGGAAGCATGTGCTGACGGGACACCAGGAGCGAGACCTGCCCGCACTCACTCCAGTGCTACGatggaggaaaggaaaaaagattGCAGAAAGGAACGAGACTTGGTTCGAGAAGAACTGCCTGTCGGACGACTGTGCTGCAGACCTGAGGCTTCATGGGAAACTGTTGCTCTCTGGGTTGCACAGCAAACACCATTTGGCCCTTGGAGGAGTAAAGAACGTCTCTTTGAACCTGACTATCTCTAACGCTGGGGATGACGCCTACGACACCAACATCTACTTCAACTTCTCCAGAGAGGTTTTCTACATCAACTTCTGGCAGAAGGAAGAGAAGGGTATTTCCTGTGGACTTGTTGATTTGGACTTCCTCAAATGCAGCGTGGGATTTCCCTTCATGAGAGCGCAGACTAAGTATCATTTTGCAGTGATTTTTGACACGAGTCAGCTCTCTGGGGAAAATGATACATTGCAGTTCTTAGTTCAAGCTAAAAGTGCCAATCCTGAGCACAAACTCTCTGATAACAGTTTGGATCTGTCCATCCCTCTGGTTCATGAGACCGACACGACTATTACTGGTGTGGTGACGCCGAGCTCCTTTGTGTACGGAAACTCCATCGATGCCTCACGCTTCGTCCAGTTGGAAGACATGGAGTGCAACTTTCAGCCTCTCAATCTCACTTTCCAGGCCATAAACAAGGGgcccagcaggctgcctggctccactGTGGACATCAGGATACCCAACCGGCTGGCTGGCAGCGGAGCTGACATGTTCCATATCATTGAAACACAGGTGGCCGAGGGTCGAGGGAACTGCACTCCTCACAGGAACCCGACACCTTGCACCGTTCCCCAGGACAGAGAGAGCATCTTCCACTCCATATTTGCCTTCTTCACCAAATCAGGACGCAAAGTCTTGGATTGTGACCGGCCTGGAAGAGCGTGTATGACTATCTCCTGCAGTCTGGGCCCACAATTAAAAGAAGAAGCTTTGAGCATAGATATAAAACTTCTACTCAACACGGAAATTCTCAAGAGGGATAGTTCCTCTGTGATCCAGTTTGTGACGAGGGGCAACGTGCAAGTCAATGACAGGGCAGTGGAGGTGCCAAACGGCCTGCCAGAGGACATTTCTCTGGTGTTCGAGGCTCTCCACAGTCAAGAGCCGAGGGGTTACGTAGTCGGCTGGATCATCGCAATCAGTCTGCTGGTGGGAATCCTCATCTTTTTGCTGTTAGCTGTGCTACTCTGGAAGATGGGATTTTTCCGTCGGCGCTACAGAGAGATCATTGAGGCTGAAAAGAACAGGAAGGACAGTGATGAAAGCTGGGACTGGATGGAAAAGAACCACTGAGATTTGTAGTGGGGGTCCCACAGGAGCCAATGAGATTAGGGATTGGGTCGGGAAGGATCCAATAGCACGTGGTCTCGCAGCCCTGCCGCCCCAGTGGCACCAGGCCCTTCAGTCTTCCATATGTGGAAGAGAAGAATATTCTCCATATTTTTTGGAGACTTGATATTTTTTTGTGGGTGGGGGTCCAGGAAACAGGCTTTTGAGGTGACAGTGTGTTGCCAGAGGACACTTGCTGTGGAATTCAGCTAATCTCAAAGGAGGTAACTCCCAGCCATCAGCCAGCGAGAGTGGAGCTGTTGATGGAGACCTACATCCGTACGGGGATGTGGAGACGGCATGAATACTGGTGGACAACAAAACCCTCAGGGCTGTGTTACAtagcaaatttatttttatacatacaGTTTAAGCCATATTGTATAAAACTGGGCTTCGAGAAGAGATCGGGTTTTGAAGGCCATTATAAACACACTGTATCTACAGTATGTTTTCCTAAAAGCACTGATGTTTGATAAGAATGAATGCCTTGGCTCCATAGCTTTACTTTTTATGCCAAAGATATGTCCTGTATAGTATATGATTGGAGTCGTTTGTATATTCAGTTCTTCCTGGGAGTGAAAGATTGTGTCTTTTCTTTACTATTTCCGGCTTATGAATATCTGTTTTACACATCTgactccccctccctcccacaTAATCAGCCAGAGTTAATTCTGTTTTAGACCCCCACACACAGTGATTAAAACGCTGTGTCCTCGTGTCATCCACTAATGTTGTCAGAGTTGTCTCAGAGGCGCTGAGGGCCCAGTAAAAGTGCTCTCTGAGGTCATTAGGATCTAGTTCAGGATGTGGTAAACAACCGCACTATAAAGTTATCTCTATCAACACTTTCTTTCTTTGCCATGTTTCCTTTATTATCCACGCCTGAAATACAGGGGGTTGTGAATTATACCATTCACTTTTCAAGCCTTGTGACTGTCCATAAGCATTCCATTTGTCATGGTCTTGCTTTTATTTCAAGGTGATAAAAGTGGATGcaacaattgaattgaatctttACTCTCTGCAGTGCTTTGAATAAACACAATGCTTTGAAAGTGCAATGTGCATTAGAGGGAATTATCTGAAGCTGCTTTTGCAAGGAACTATTGCTCAGGTATGCAGCTGACTTTTTAGGCGGACCCCCAAAGGTTTCCTGGTTCAAGTGAAGACTGAATTACTGTAAGATATGATTCACTATAAGTCATGACACACAACCTGATCATGATTtatttccaaaacctttccagacTTCACCTAAGCCAACCATACTTAATTTTACTATTATGTTATTAGGCTTTGGGTTTTAGCTTGAAATATGAGCTACATTACTCTCCACGGTCAGATGAAAGTCTGCGATGGGAGTCCACCTACAGTCATTTACAGGGGCCCATGGCATGAGTAATGCCCTAAAAATAGGTGGGAATTTGCAGCACTCAATCACTGCACATAAACGAGCTCTTTGGGGCTCATGGGAAAAGTTCATTTTAAGTCAACATGGAAGAATGTCAGCTCCCTGAAAATCTGCCACTATTTCATTTCACAACTCCTCAGTACTAAATTTTTTTACTCCACGTTTTTGAGAGTCTTTTAAAGCTGGGTTTTATTGTGAATGAACATTTGCAGAACACAGTGACTTCAATTTTGTATTAAATGTCCCCAAAGAAGTATGATTAACTGTAACATTTGTTCATTGCAAAATAAcatgaagacattttttttaattatgctccaaaaaataagttttgatgTCAGTTTTGAAGAATTTATCAATGAAAATTCatttataattaatattttaaaacagATATTTTGCAGTTAACCAGAATCAGATTTAAATGTGCAATGCCAAAGAACAAAAACTATATTTTAATATGTTTCACATTTCAGTGCTAAGACACTTTATGGCTCACAATGATTGCTTGGCTCTCTATTTTGTGCTGTATGAATCTGTTATTGATCTAATACACTTTATTTTACCATTTAATTCCACTGGCATGAcggcatatactgtacacattCACGTCTTCCCTGCATATCTGCTAAACCGATGCTACACCTGTATGCAGAGAAACCGACACTTGACATTTTTTGGTAAATTTGAACTGTGATGGTTatattttgttgtgtatgtttgttgtcACCGTTAATCACAccgttatttgtttttgtttttgttgagtaTACTACTGTCACTGAATATCATTTCCATTATAGTGTGCTGTATATGTTTGATGTTTAAAGTCATGTTGGAACTGTATATTTATCTGTTGATAAATTTTAGAGTGAAATTTCA

Function

symbol description
itga9 Acts upstream of or within lymphangiogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of integrin complex. Is expressed in several structures, including cardiovascular system; epidermis; fin bud; pigment cell; and trunk. Human ortholog(s) of this gene implicated in cerebral infarction; hypertension; and pancreatic cancer. Orthologous to human ITGA9 (integrin subunit alpha 9).

NR:

description
integrin alpha-9

GO:

id name namespace
GO:0007229 integrin-mediated signaling pathway biological_process
GO:0007155 cell adhesion biological_process
GO:0008305 integrin complex cellular_component

KEGG:

id description
K06585 ITGA9; integrin alpha 9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039784109.1 True 5694 mRNA 0.45 28 21423766 21474056

Neighbor

gene id symbol gene type direction distance location
golga4 NA coding upstream 1653 21397072 ~ 21422113 (+)
lhcgr LOC103358126 coding upstream 176381 21231028 ~ 21247385 (+)
LOC120547712 nrxn1,LOC102793382,LOC103356500 coding upstream 318466 20839587 ~ 21105300 (+)
gpr75 gpr75 coding upstream 778596 20640833 ~ 20645170 (+)
psme4a psme4 coding upstream 783399 20605868 ~ 20640367 (+)
LOC120547989 LOC104967820,LOC107989005 coding downstream 5405 21479461 ~ 21482598 (+)
LOC120547990 fbln7 coding downstream 18663 21492719 ~ 21506947 (+)
sft2d1 sft2d1 coding downstream 60887 21534943 ~ 21545927 (+)
prr18 prr18,LOC102776904 coding downstream 74605 21548661 ~ 21551787 (+)
si:ch211-130h14.4 NA coding downstream 77383 21551439 ~ 21564757 (+)
G195578 NA non-coding upstream 131650 21291841 ~ 21292116 (+)
G195577 NA non-coding upstream 132025 21291513 ~ 21291741 (+)
G195575 foxn2 non-coding upstream 134556 21285431 ~ 21289210 (+)
G195570 NA non-coding upstream 143454 21278847 ~ 21280312 (+)
G195565 NA non-coding upstream 158103 21265285 ~ 21265663 (+)
G195634 zc3h6,LOC100704674,LOC102799538 non-coding downstream 13047 21487103 ~ 21487648 (+)
G195648 tmem87b non-coding downstream 38684 21512740 ~ 21514404 (+)
G195654 NA non-coding downstream 41702 21515758 ~ 21516441 (+)
G195650 NA non-coding downstream 72390 21546446 ~ 21547916 (+)
G195679 NA non-coding downstream 193559 21667615 ~ 21671475 (+)
fbxo11a fbxo11,LOC104951339 other upstream 91189 21318610 ~ 21332577 (+)
G195518 NA other upstream 669957 20752773 ~ 20753809 (+)
G195448 thbs2 other upstream 893451 20529767 ~ 20530315 (+)
adgrb3 adgrb3 other upstream 1266818 20041774 ~ 20156948 (+)
gfral NA other upstream 1993670 19426475 ~ 19430096 (+)
G195653 LOC102296834 other downstream 40470 21514526 ~ 21515128 (+)
kif16bb NA other downstream 681346 22155402 ~ 22184492 (+)
tasp1 tasp1 other downstream 1173858 22647914 ~ 22692604 (+)
disc1 disc1 other downstream 2088227 23562283 ~ 23611337 (+)
klhdc3 klhdc3 other downstream 2344858 23818914 ~ 23851605 (+)

Expression


Co-expression Network