pkd2l1 (pkd2l1,LOC104965266,LOC104921890,LOC103371634)


Basic Information

Item Value
gene id pkd2l1
gene name pkd2l1,LOC104965266,LOC104921890,LOC103371634
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 25171104 ~ 25177459 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039784114.1
agagacacacaggtgtCTGACAGCATGAAGTGTCGGAACAACCGGGCCGACAGCCACCTGACCGGGCAGGTGGAGTTGAACAGCGTAAGCAACGGCGCCTGGGTGAACCAGGGCTACTGTGGCTCACCTCTGCCCCTGCCCCGAGCTGTCAGCACCATCTACAACCCCCAGCCCATTGTCCAGGGCTCCATGGACAGCATGTACAAACCGGACATCCCCGGTCCATTCCCAGAGGAACCACCATCCACTGGCCAAAGCCTGGTGAAGAAACAAAGAGGCTGCTGCTCTTTTATCAAAGGCTTGTGGGGGACAACATTGACTGAAAACACCTCAAACAACAGAGAACTGTTTGTCCGAACCACGCTACGGGAGTTAATGGTCTATCTGGTGTTCCTGGTGGATATATGCCTCTTGACATACGGTATGACCAGCTCGAGCACCTATTACTACACTAAAGCCATGACGGACCTGTTTGTGAACACAGCCGGTAACAGTGGGGTTACGTTTCAGTCCATTGGCACCATGGCTGACTTCTGGACCTATGCCCAGGGCCCATTGGTGGACAGCCTCTACTGGACTACATGGTACAATAACCAGTCCCTGGACAGCGGAGACCAGTCCTTCATCTACTATGAGAACATGCTGCTGGGAGTCCCTAGAATGAGGCAGATCAAGATCATGAACAACTCCTGCAAGGTCCCCAAAGACTTTAAAGATGAGATCACGGGATGTTTCGATGTTTACACTGACAAGAAGGAGGATGAAATTAGCTTCGGTCTCATCAATGGCACCGCCTGGACCTaccacacagagaaagaaatcAAAGGTTCTTCTTACTGGGGATTGCTGACCACATACAGTGGAGCGGGATACTACCAAGACCTGAGTCGCACCAAAGAGGAGACCGCAATCATACTGCAGGAACTGGTGGACAACCTGTGGCTTGACCGAGGAACCAGAGTAGCATTCATCGACTTCTCCACTTACAACGCAAACATTAACATGTTCTGTGTCATCAGGTTGGTTGTTGAATTCCCAGCAACTGGCGGAGCAATCCCTTCCTACCAGATAAGAACAGTCAAACTGATTCGCTACATCACCAACTGGGATTACTTTATCCTCGGCTGTGAGATGGTCTTCtgtttattcattatttattacgTTGTGGAGGAGATTCTTGAGCTGCGAATACACAAGCTCTCCTATTTCAAAAGCATCTGGAACATATTGGATGTTGTTGTCATAATGCTCGCCATCGTTGCCATTGTATTCAATATTTTCCGAACTGTCAAAGTGGACAACTTGCTTGGCAAACTGCTGGAACAACCCGGTATCTACGCTGACTTTGAATTTCTGGCCTTCTGGCAAACACAGTACAACAACATGAATGCAGTGAACTTGTTCTTTGCGTGGATCAAGGTTTTCAAGTACATCAGTTTTAACAAGACCATGACTCAGCTGTCCTCCACACTGGGACGATGTGCTAAAGATATCTTGGGCTTTGCCATCATGTTCTTCATCGTGTTCTTCGCCTATGCTCAACTTGGATATTTGCTCTTTGGGACAGAGGTTCAATCTTTCAGCACCTTCGTCAAGTGCATCTTCACACAGTTCAGAATTATTCTTGGAGACTTTGATTTCGATGCCATCGACCGCGCTAATAGAGTTCTTGGGCCAATCTACTTTGTCACCTAtgtgttctttgttttctttgttctacTGAACATGTTTCTGGCCATCATAAATGACACATATTCTGAGGTTAAGGAGGAGCTCTCATCCCAAAAAGATGAGCTACAGTTTACTGACATCATCAAACAGaGCTATATGAAGACATTTACGAAGTTGAAActtaaaaaggagaaaataacaGATGTTCAGAAAGTGCTACAGTCTGGATCCAGAGACATTGAATTCAAGGACTTCAGAGAAACCTTGAAAGAGATGGGACATGCTGATCATGAAATTTCTGCAGCCTTCTCACGGTTTGACCATGATGGGAACCAAATTCTAGACAAAGAGGAACAAGCAAGGATGAAAATCGAGCTGGAAGAAAAAAGGGACGCTCTTTGTGCTGAACTTAACAATCTTGGAACGACTTATGGGAAAGAAGTACTGGAAAAGCCTCCTGTAACATCCAATGAGCAGAAGAACCACACTGTTGATCAGGAACAGTTTCTAAGACTGGCCAGACAGGTTCGTCACCTTGAAAGCTCTGTGGCAGGCATTACATCCAGGATTGAGTTGATCGTGGAAAAACTGGGATTACAAGAGAAAACTAAGGGAGACCAAACGGCAAGGAAACTGACTGTAGCCAATAATGATAGTGATGACGCTGCCTCAGATGGGAGCGTCCTGGTGTGCGTGGACGGAGGGACCAAGGCTGAGATGTCATCAAGGAAACCAGCAGTTTACACCGACTCCACATACGACTGTCATATGTGATTAACCTCTGAGAAACAGAATCATGGGTTATCTGGAAGTCAGCTGACACACGTCAACAATGTTTTGTGCTTCACTACTTTCCAATGttcaaagtctgttcaaatCAACGGATTCTTCGTGGGTGAAACCCACAGTTAGGCAGTCAGATCAACAATAAGCTGCTGACATGACATGGCACATATTCTACACTTTCAGCTGCTTTTCACTTAGTTACTGCCACTCATTTCATGGAAATATGTAAGTACTgtataaatatgtttttgaaATTCCTTGCCTTCTAGGTGACACAAGAGCTTATATAATAAACTGGTTTAAGCTCAGATATGTTAAACAATGTACGTTGTAGATGAGATTATTAGTTGTGTATTATACATGTATTTAAACAATATgtaagaaaaaataaagttatgcaATATAATCAATATTATACAGTGCATATGCCACCTTACACCTGACTAAGCGATGTTTGCTTTGCTTTAGTCATTTAATGTTTATGAATGTTCAGGTTCTATTACAGCTGCTCAAAAGCTATCAGCCCCttgacttttattttaatttaacctttatttatccaggtaagtcgattgagaacaacttctcatttgcaacg

Function

symbol description
pkd2l1 Predicted to enable calcium ion binding activity; cation channel activity; and muscle alpha-actinin binding activity. Acts upstream of or within mechanosensory behavior. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be active in membrane. Is expressed in nervous system; pharyngeal arch cartilage; pharynx; and spinal cord neural tube. Orthologous to human PKD2L1 (polycystin 2 like 1, transient receptor potential cation channel).

NR:

description
polycystic kidney disease 2-like 1 protein

GO: NA

KEGG:

id description
K04990 PKD2L1; polycystin 2L1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039784114.1 True 3055 mRNA 0.44 15 25171104 25177459

Neighbor

gene id symbol gene type direction distance location
atoh7 atoh7 coding upstream 2054 25167925 ~ 25169050 (+)
mypn mypn coding upstream 6475 25144557 ~ 25164629 (+)
sirt1 sirt1 coding upstream 32555 25131453 ~ 25138549 (+)
herc4 herc4 coding upstream 63024 25091886 ~ 25108080 (+)
LOC120547833 LOC103359796,LOC104940887,LOC102792006,LOC107088245,LOC101481961 coding upstream 82034 25085914 ~ 25089070 (+)
bag3 bag3 coding downstream 14360 25191819 ~ 25197871 (+)
inpp5f inpp5f coding downstream 21080 25198539 ~ 25213504 (+)
LOC120548364 sec23ip coding downstream 44966 25222425 ~ 25232512 (+)
pcbd1 pcbd1,LOC106525612 coding downstream 118804 25296263 ~ 25299446 (+)
neurog3 NA coding downstream 138936 25316395 ~ 25318133 (+)
LOC120547601 NA non-coding upstream 51980 25111395 ~ 25119124 (+)
G196485 eif3l non-coding upstream 222072 24947838 ~ 24949032 (+)
G196481 NA non-coding upstream 257636 24873802 ~ 24913468 (+)
G196476 NA non-coding upstream 323414 24847114 ~ 24847690 (+)
G196475 NA non-coding upstream 327252 24843443 ~ 24843852 (+)
G196558 NA non-coding downstream 700 25178159 ~ 25181813 (+)
G196563 NA non-coding downstream 11971 25189430 ~ 25189679 (+)
G196595 mcmbp non-coding downstream 42088 25219547 ~ 25219914 (+)
G196648 pdlim1 non-coding downstream 140807 25318266 ~ 25320869 (+)
G196690 NA non-coding downstream 250184 25427643 ~ 25433896 (+)
cacul1 cacul1,LOC103374658,LOC102794354 other upstream 26850 25139047 ~ 25144254 (+)
dact2 dact2,LOC103391347 other upstream 157855 25008474 ~ 25013249 (+)
G196439 wdr11 other upstream 601937 24564550 ~ 24569167 (+)
LOC120548495 ate1 other upstream 744602 24367954 ~ 24426502 (+)
LOC120547848 LOC103369904,LOC106907288,LOC107081732 other upstream 803505 24357926 ~ 24367599 (+)
LOC120548229 rab11fip2 other downstream 304372 25481831 ~ 25495505 (+)
zgc:110045 LOC102779765,LOC102305383,LOC100704767,LOC101482925,LOC102197868 other downstream 417037 25594496 ~ 25674906 (+)
prdx3 prdx3 other downstream 435948 25613407 ~ 25620675 (+)
LOC120548053 LOC103353497,LOC102790632,LOC102299158,LOC102194143,LOC101482614,LOC100706574 other downstream 639792 25817251 ~ 25826429 (+)
stpg4 LOC103353520,LOC101467386,LOC102793681,LOC102299197 other downstream 1357825 26535284 ~ 26548760 (+)

Expression


Co-expression Network