LOC120548109 (LOC102195401,LOC103353517,LOC102300597,LOC106939791)


Basic Information

Item Value
gene id LOC120548109
gene name LOC102195401,LOC103353517,LOC102300597,LOC106939791
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 30711573 ~ 31005023 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039784116.1
AAAATTCCGATAGTCTTGAATGCAGCAGGGATGATGTTGCCTTGGATCCATATTACCTTGTTAGCAGGTTGCAAGCTAGCTGAATACAGACGGTACAGTGCGGATACAAGAggatgtcacacgttttttaaTACGAACTGAGGACTTCGTGGTTTTTATCGGCTCGACACAAGCAGGACTAATAACTCCCAAACTTTGGCGAGATGACGACGCGCTCAGAGCGAGAGAAAGCCCAGAAACTGAATGAGCAGCATCAGGCCATTCTGTCTAAACTGCTGAGGGAAGAACACAACAAGTTCTGTGCTGACTGTGAGGCAAAAGGTCCTCGATGGGCATCATGGAACCTCGGGGTGTTCATGTGTATCCGCTGTGCCGGCATCCACCGCAACCTGGGTGTCCACATCTCCAGAGTCAAATCTGTCAATCTGGACCAGTGGACACCCGAGCAGATCCAGAGTATGGTGGACATGGGCAACAGCAGGGCCAAACAGCTGTATGAAGCCTACCTACCAGAGAACTTCAGACGGCCACAGACAGACCAAGCAGTGGAGGTCTTTATCCGGGACAAGTACGAGAGAAAGAAGTACTGCAACAAGGAGGCCCTGACTGCAGCTCCACCCAAGTCCTCTGAAGCTGCTCCTCCATCCACCTCACTGTCCTCCCAGGCTGACAGAAGCCAACAGGAGAAGGAGCGTGAAAAGAataaagaggagaagaagaaggatgtTAATAAAGtggagaaacacaacaacacaaagCAGTCCGAGTGTAGCGCCAGTCCCAAGGGAAGCACAGAGCCGGCTGTGGACCTGCTGGGCCTGGATGCTCCAGAGGGTGATGGGAGGGGCTCGAGTGGTGCAGCACCAATCAGCGATGAACTGGACATCTTTGGACCAATGGTCTCCAACCCTCTTCCCTCTTCCAACAACACACAGCAGTCTGGTTCCAGTCCAGCACCTCCACAGGCGGACCCCTCCAcctcgtcctcttcctcctcctctacctccACCACTACCACCACGAAGGCGGAGGAgaagaagcttttatctaaagACTCCATCCTGTCTCTGTACGCCAGCAGCTCAGTGGCCAGTCAGCCGCAGAGCCAGCAACAGCCTGCTCCAGGACAAGGAATGTATGCGGGCCAGCCTCAGATGCCGTTCACTCCGCAGGGTTTCACTCCAGGGATGGGCGGAGCCGCCATGGGCGGAGGAGGGGCCATAATGCCCGGCATGGCGATGCCCAACGGCAGCTACATGGGCATACAGCAGCAGGGCGGGTTGCCAGCCAACCAGAACATTTACAGCATGCAGCCAGGACAGCAGCAAGGACAGTGGAACATGAGCCAGATAACCCAGCAGATGTCAGGCATGGATGTGAGTGGTGGAGTGCCGGCACCAGCCACTTTCAGCCAGGCAGGGGCCCCTGCGGCTGGCTGGCCCGCGGCTCCACCTGCAGCTACTGGCCAGACCCTCAGCACTCAGCTGTGGAAGTGAGGAAAAGGGGGTCCGGAGGAGGAGTGGGGGAAAACGGAGGGCAGTCATATGGCAATAAAATAGtgccccccccaaccccccccaac
>XM_039784117.1
AAAATTCCGATAGTCTTGAATGCAGCAGGGATGATGTTGCCTTGGATCCATATTACCTTGTTAGCAGGTTGCAAGCTAGCTGAATACAGACGGTACAGTGCGGATACAAGAggatgtcacacgttttttaaTACGAACTGAGGACTTCGTGGTTTTTATCGGCTCGACACAAGCAGGACTAATAACTCCCAAACTTTGGCGAGATGACGACGCGCTCAGAGCGAGAGAAAGCCCAGAAACTGAATGAGCAGCATCAGGCCATTCTGTCTAAACTGCTGAGGGAAGAACACAACAAGTTCTGTGCTGACTGTGAGGCAAAAGGTCCTCGATGGGCATCATGGAACCTCGGGGTGTTCATGTGTATCCGCTGTGCCGGCATCCACCGCAACCTGGGTGTCCACATCTCCAGAGTCAAATCTGTCAATCTGGACCAGTGGACACCCGAGCAGATCCAGAGTATGGTGGACATGGGCAACAGCAGGGCCAAACAGCTGTATGAAGCCTACCTACCAGAGAACTTCAGACGGCCACAGACAGACCAAGCAGTGGAGGTCTTTATCCGGGACAAGTACGAGAGAAAGAAGTACTGCAACAAGGAGGCCCTGACTGCAGCTCCAAAGGAGCGTGAAAAGAataaagaggagaagaagaaggatgtTAATAAAGtggagaaacacaacaacacaaagCAGTCCGAGTGTAGCGCCAGTCCCAAGGGAAGCACAGAGCCGGCTGTGGACCTGCTGGGCCTGGATGCTCCAGAGGGTGATGGGAGGGGCTCGAGTGGTGCAGCACCAATCAGCGATGAACTGGACATCTTTGGACCAATGGTCTCCAACCCTCTTCCCTCTTCCAACAACACACAGCAGTCTGGTTCCAGTCCAGCACCTCCACAGGCGGACCCCTCCAcctcgtcctcttcctcctcctctacctccACCACTACCACCACGAAGGCGGAGGAgaagaagcttttatctaaagACTCCATCCTGTCTCTGTACGCCAGCAGCTCAGTGGCCAGTCAGCCGCAGAGCCAGCAACAGCCTGCTCCAGGACAAGcAGGAATGTATGCGGGCCAGCCTCAGATGCCGTTCACTCCGCAGGGTTTCACTCCAGGGATGGGCGGAGCCGCCATGGGCGGAGGAGGGGCCATAATGCCCGGCATGGCGATGCCCAACGGCAGCTACATGGGCATACAGCAGCAGGGCGGGTTGCCAGCCAACCAGAACATTTACAGCATGCAGCCAGGACAGCAGCAAGGACAGTGGAACATGAGCCAGATAACCCAGCAGATGTCAGGCATGGATGTGAGTGGTGGAGTGCCGGCACCAGCCACTTTCAGCCAGGCAGGGGCCCCTGCGGCTGGCTGGCCCGCGGCTCCACCTGCAGCTACTGGCCAGACCCTCAGCACTCAGCTGTGGAAGTGAGGAAAAGGGGGTCCGGAGGAGGAGTGGGGGAAAACGGAGGGCAGTCATATGGCAATAAAATAGtgccccccccaaccccccccaac

Function

NR:

description
PREDICTED: stromal membrane-associated protein 1-like isoform X1

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0043085 positive regulation of catalytic activity biological_process
GO:0043087 regulation of GTPase activity biological_process
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K12486 SMAP; stromal membrane-associated protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039784116.1 True 1582 mRNA 0.56 11 30711573 31005023
XM_039784117.1 False 1516 mRNA 0.56 10 30711573 31005023

Neighbor

gene id symbol gene type direction distance location
slc1a4 slc1a4,LOC102791775 coding upstream 40389 30625630 ~ 30671184 (+)
sertad2b sertad2,LOC104932742 coding upstream 110964 30506054 ~ 30600609 (+)
nvl NA coding upstream 375413 30267788 ~ 30336160 (+)
cdt1 NA coding upstream 748483 29956720 ~ 29963090 (+)
pcca pcca coding upstream 1013430 29659412 ~ 29698143 (+)
ogfrl1 ogfrl1,LOC104917660,LOC103363704,LOC100701482 coding downstream 178297 31183320 ~ 31198691 (+)
LOC120547952 rims1,LOC102777706,LOC102298248 coding downstream 337936 31342959 ~ 31493220 (+)
bcl11aa bcl11a,LOC103363701,LOC102779517 coding downstream 507841 31512864 ~ 31573621 (+)
fancl fancl coding downstream 1440064 32445087 ~ 32483666 (+)
LOC120547814 NA coding downstream 1651963 32656986 ~ 32659866 (+)
G197854 NA non-coding upstream 37091 30674212 ~ 30674482 (+)
G197909 NA non-coding upstream 64253 30646403 ~ 30647320 (+)
G197889 NA non-coding upstream 223015 30488250 ~ 30488558 (+)
G197887 NA non-coding upstream 224160 30487115 ~ 30487413 (+)
G197885 NA non-coding upstream 228144 30483208 ~ 30483429 (+)
G197982 NA non-coding downstream 193932 31198955 ~ 31200000 (+)
G197983 NA non-coding downstream 195833 31200856 ~ 31202473 (+)
G197991 NA non-coding downstream 201068 31206091 ~ 31206356 (+)
G198002 NA non-coding downstream 235922 31240945 ~ 31242282 (+)
G198004 NA non-coding downstream 246366 31251389 ~ 31251871 (+)
LOC120547658 NA other upstream 509753 30153511 ~ 30201820 (+)
LOC120547718 LOC102789565,LOC100690068,LOC101471749,LOC103357097 other upstream 1092557 29518941 ~ 29619016 (+)
G197531 NA other upstream 1361645 29348425 ~ 29349928 (+)
LOC120548242 ccdc85a,LOC104955469,LOC102783086,LOC102310250,LOC102209339,LOC100696856 other upstream 1534079 29112688 ~ 29177494 (+)
ccnj ccnj,LOC102785723 other upstream 2409240 28294205 ~ 28302333 (+)
G197999 NA other downstream 229341 31234364 ~ 31234723 (+)
G198185 NA other downstream 1788265 32793288 ~ 32794661 (+)
G198245 rab1a,LOC104962072,LOC102231865 other downstream 1957365 32962388 ~ 32965074 (+)
slc2a15a LOC103367959,LOC104935160,LOC103476520,LOC106961144,LOC103155793 other downstream 2152706 33157729 ~ 33199862 (+)
si:ch211-51a6.2 LOC104924867,LOC103357113,LOC100694100 other downstream 2976488 33981511 ~ 34008003 (+)

Expression


Co-expression Network