calm2a (calm1,LOC102778633,LOC102293206,LOC107396020)


Basic Information

Item Value
gene id calm2a
gene name calm1,LOC102778633,LOC102293206,LOC107396020
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 26527783 ~ 26531726 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039784131.1
TGAAAAGAGGAGGAGTTTAGGATAGCCGTTAAAGGCGAGTCCAGTTGCTTCTTCCTCAGTGTGTTCACAGAGATTGTCAGTTCGTTTAGGTTTGTTACGGATTTTGTCGTGAACTAGCCGCTGCATCTACATCGAAATGGCTGATCAGCTTACAGAAGAGCAGATTGCTGagtTCAAGGAGGCGTTTTCGCTCTTTGACAAGGATGGAGATGGCACCATCACCACCAAAGAGCTGGGAACTGTCATGCGCTCTCTGGGCCAGAACCCCACAGAGGCAGAGCTGCAGGACATGATCAATGAAGTGGATGCTGATGgaaatggAACGATAGACTTCCCAGAGTTTCTCACCATGATGGCCAGGAAGATGAAGGACACAGACAGtgaggaggagatcagagaaGCATTCCGTGTCTTTGACAAGGATGGTAATGGATACATCAGTGCTGCTGAGCTGCGCCATGTGATGACAAACCTTGGGGAGAAGCTGACTGATGAAGAAGTGGATGAGATGATTAGAGAAGCAGACATTGATGGAGATGGACAGGTCAACTATGAAGAGTTCGTACAAATGATGACGGCGAAGTGAAGGGCTTGTACAGATTTCGTATATAAataatttgccttttttttttctttctttgtgtaaTTTATCTGTAAAATCTTAATAGCCCCCTTCGTCCCTGCCCCATCTGCTGTCCAAAGGAACTGCATGTAAACTGCATAGGCTCTTGTCCCCAtgtcccttttttcttttgctgtcATGGTGTTTTGGAGTGACGGAATGGTCATACAACCAGATGCCTGTGGAGGCCCCTGGGAGCCGGAGTACTTCGAATCTTCCCGTCTTGCGTGCTCGGGGCCACTCCACGCATGGCGACATTGGAAACCTGTCAGCTGGTTGTCCCTTGGCAACACTGTTGGCATGGAAACAATGTAGAGGAGTTTAAACTCTGCATGGACTACGGACAAAGTATATATTGTAATCTCTCAGCATTGCACTACTGCAAAAAATGACACGGGTGTATCTCCTAGGTACTCGTACAAACTTTTTTTGTATCTGCTGTTCTAATACCAGAAAACGACTAATCTTACcatgctttttaatgttttactcacttttacttttttttttttttttttatgacttctgGTCATGCCTCAAATAATCCATTCCAagttgtatatttttgttttccaaTAAAAATTACAATCTAC

Function

symbol description
calm1 Enables several functions, including N-terminal myristoylation domain binding activity; enzyme activator activity; and enzyme binding activity. Involved in several processes, including positive regulation of hydrolase activity; regulation of calcium ion transmembrane transport; and regulation of heart contraction. Located in microtubule cytoskeleton and sarcomere. Part of calcium channel complex and catalytic complex. Implicated in catecholaminergic polymorphic ventricular tachycardia 4 and long QT syndrome 14. Biomarker of Alzheimer's disease.

NR:

description
unnamed protein product

GO:

id name namespace
GO:0022400 regulation of rhodopsin mediated signaling pathway biological_process
GO:0001975 response to amphetamine biological_process
GO:0007190 activation of adenylate cyclase activity biological_process
GO:0045087 innate immune response biological_process
GO:0010881 regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion biological_process
GO:0051412 response to corticosterone biological_process
GO:0007202 activation of phospholipase C activity biological_process
GO:0005513 detection of calcium ion biological_process
GO:0002027 regulation of heart rate biological_process
GO:0000086 G2/M transition of mitotic cell cycle biological_process
GO:0030168 platelet activation biological_process
GO:0002576 platelet degranulation biological_process
GO:0038095 Fc-epsilon receptor signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0035307 positive regulation of protein dephosphorylation biological_process
GO:1901841 regulation of high voltage-gated calcium channel activity biological_process
GO:1901844 regulation of cell communication by electrical coupling involved in cardiac conduction biological_process
GO:0043647 inositol phosphate metabolic process biological_process
GO:0043388 positive regulation of DNA binding biological_process
GO:1901339 regulation of store-operated calcium channel activity biological_process
GO:0008543 fibroblast growth factor receptor signaling pathway biological_process
GO:0051000 positive regulation of nitric-oxide synthase activity biological_process
GO:0048011 neurotrophin TRK receptor signaling pathway biological_process
GO:0032465 regulation of cytokinesis biological_process
GO:0005980 glycogen catabolic process biological_process
GO:0051343 positive regulation of cyclic-nucleotide phosphodiesterase activity biological_process
GO:0032516 positive regulation of phosphoprotein phosphatase activity biological_process
GO:0016310 phosphorylation biological_process
GO:0046209 nitric oxide metabolic process biological_process
GO:0006006 glucose metabolic process biological_process
GO:0060315 negative regulation of ryanodine-sensitive calcium-release channel activity biological_process
GO:0060316 positive regulation of ryanodine-sensitive calcium-release channel activity biological_process
GO:0007173 epidermal growth factor receptor signaling pathway biological_process
GO:0034704 calcium channel complex cellular_component
GO:0030426 growth cone cellular_component
GO:0005813 centrosome cellular_component
GO:0000922 spindle pole cellular_component
GO:0005829 cytosol cellular_component
GO:0005576 extracellular region cellular_component
GO:0005876 spindle microtubule cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0030017 sarcomere cellular_component
GO:0043548 phosphatidylinositol 3-kinase binding molecular_function
GO:0043274 phospholipase binding molecular_function
GO:0017022 myosin binding molecular_function
GO:0031800 type 3 metabotropic glutamate receptor binding molecular_function
GO:0005509 calcium ion binding molecular_function
GO:0008179 adenylate cyclase binding molecular_function
GO:0030235 nitric-oxide synthase regulator activity molecular_function
GO:0019904 protein domain specific binding molecular_function
GO:0050998 nitric-oxide synthase binding molecular_function
GO:0048306 calcium-dependent protein binding molecular_function
GO:0005246 calcium channel regulator activity molecular_function
GO:0072542 protein phosphatase activator activity molecular_function
GO:0031432 titin binding molecular_function
GO:0044325 ion channel binding molecular_function
GO:0016301 kinase activity molecular_function
GO:0031996 thioesterase binding molecular_function
GO:0031997 N-terminal myristoylation domain binding molecular_function

KEGG:

id description
K02183 CALM; calmodulin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039784131.1 True 1215 mRNA 0.44 6 26527783 26531726

Neighbor

gene id symbol gene type direction distance location
si:ch73-105b23.6 LOC104955877 coding upstream 6206 26495508 ~ 26521577 (+)
plekhh2 plekhh2 coding upstream 51056 26414524 ~ 26476727 (+)
trnai-uau_2 NA coding upstream 544945 25982745 ~ 25982838 (+)
hcar1-3 NA coding upstream 547346 25977457 ~ 25980437 (+)
haao haao coding upstream 558267 25962355 ~ 25969516 (+)
mcfd2 mcfd2 coding downstream 87691 26619417 ~ 26622570 (+)
LOC120547700 plac9 coding downstream 226607 26758333 ~ 26767338 (+)
LOC120547537 NA coding downstream 333899 26865625 ~ 26873668 (+)
valopa valop,LOC104938804,LOC106940109,LOC107093123 coding downstream 645242 27176968 ~ 27206666 (+)
LOC120548504 kndc1 coding downstream 1276578 27808304 ~ 27878568 (+)
G196967 NA non-coding upstream 216497 26291118 ~ 26311286 (+)
LOC120548056 NA non-coding upstream 398252 26122891 ~ 26129531 (+)
G196935 NA non-coding upstream 410143 26117101 ~ 26117640 (+)
LOC120548055 NA non-coding upstream 416608 26106533 ~ 26111175 (+)
G196921 NA non-coding upstream 426761 26100492 ~ 26101022 (+)
G197027 NA non-coding downstream 1306 26533032 ~ 26533234 (+)
G197029 NA non-coding downstream 8118 26539844 ~ 26540135 (+)
G197035 LOC104925924,LOC104948680,LOC103376065 non-coding downstream 92909 26624635 ~ 26627702 (+)
G197069 LOC103370964,LOC104925911,LOC102295618,LOC103148144 non-coding downstream 208531 26740257 ~ 26746085 (+)
G197084 nkx6-2,LOC102789131 non-coding downstream 533000 27064726 ~ 27104508 (+)
LOC120548053 LOC103353497,LOC102790632,LOC102299158,LOC102194143,LOC101482614,LOC100706574 other upstream 701354 25817251 ~ 25826429 (+)
zgc:110045 LOC102779765,LOC102305383,LOC100704767,LOC101482925,LOC102197868 other upstream 852877 25594496 ~ 25674906 (+)
prdx3 prdx3 other upstream 907108 25613407 ~ 25620675 (+)
LOC120548229 rab11fip2 other upstream 1032278 25481831 ~ 25495505 (+)
cacul1 cacul1,LOC103374658,LOC102794354 other upstream 1383529 25139047 ~ 25144254 (+)
stpg4 LOC103353520,LOC101467386,LOC102793681,LOC102299197 other downstream 3558 26535284 ~ 26548760 (+)
G197053 NA other downstream 131433 26663159 ~ 26663785 (+)
tmem254 NA other downstream 193990 26725716 ~ 26735787 (+)
pwwp2b pwwp2b other downstream 342489 26874215 ~ 26953805 (+)
LOC120547882 inpp5a other downstream 394692 26926418 ~ 27109140 (+)

Expression


Co-expression Network