olig3 (olig3)


Basic Information

Item Value
gene id olig3
gene name olig3
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 12058425 ~ 12060064 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039784233.1
gagagaaagagagagagagacagaggaagacagCAGAGACCTCCTACCCACTACCCTAGGAAGCGAACCCATAAAATGAATTCAGACTCCAGCCCGAGCAGCAGAGCCTCTTCCCCGGACATGGACGTTATGTCTCTCCGAGACCACCACCcgcaccaccaccatcaccaccacgtCGGCTCCTCAGTGTCCTCTTCTACGCAGTGCAGCGAGCTGCGCCAGAAGCTGAGCGCCAGCGAGCTCCTGAGGTCTGGAGACCCCAAGTCAGTaggaagcagcagcagtagcagcagcagcagcagcagcagtagcagcaacaAGTTCAAACTCAAGAAACAAGTCACCGAGGAGGAAATGTACCACCTCCGTCTCAAGATCAACGGCCGGGAGCGGAAGCGCATGCACGACCTCAACCTGGCCATGGACGGCCTGCGCGAGGTGATGCCCTACGCGCACGGGCCCTCGGTGCGGAAGTTGTCCAAGATCGCCACGCTGCTTCTCGCCAGGAACTACATCCTGATGCTTAACAGCTCCTTGGACGAGATGAAGCGGCTGGTGGGGGAGATTTACGGAGGGCACAATTCAGCTTTCCACTGCGGCACCGTGGCGCACGCCGGCGCAGGTGGACACCCCGCTGCCGCAGCCGCAGCCGCAGCCGCTGCGGCGCACCAGGTGCACCCTCTCCTCGGGAGCGCGCTGTCAACCTCGACATCCTCCACGCTGTCGAGCGCTCTGCCGGGGCTCACGTCTATCCGAGCACCCCACGCCCTGATGAAGGGCTCCCCGGCTGCGCCCACGGCCCTGCAGCTGGGCACCGGCTTCCAGCACTGGGCCGGACTGCCGTGTCCCTGCACCATCTGCCAGgtgcctcctcctccacacatcCCCATCACCTCCTCCGGCCTCACGAGACTCACAGGGGAGGGCAAGGACCTGATGAAATGATGTTTGACAGACACGCGACAAAAAGATGTAATGGTGATTGTAAATAGAGAATTTAGGGCATGAGGGTGGATTTGGCCTCACTGGTGCATGTTGTTGTTTAGTCTGTTTTCTTGTTTGGCGTATGAGAAAAAGCTGTTATTTTCCTCCTTGTAACAAGGACTTATAAAGGCTGATGAGTTTGCCAGTTGacggtaaaaaagaaaaggttgtGTGTCATGCAACAAGATGCCACGATCCTCTTGTGTCTGACTGAGTTTTAGTCTCACACCACAATGTGAAAGGTGAACGAGACTGCATGAACATTTTGATTtcatttagcattttttttttgtatcaggCGTCATTTTGTGACAACGAAGAATGCTCTCTGTGCCTTGTACCAAGGATTGTAAACTGAAGTTGTAAATGAAAATGATGGCATTTATGTGTTTGGCTCAAATGATTCTGCCACTGCggaaatttgttttaaaattctttagatttatttttattctgtggCTCACTGTGTGCCCATTTGTGCTCTGAGTtccaatttttttcttttcttttttttgcatgatGTTAATTATCACAGCATGATTGTTTTTCGCTGAACTGAATTTGTTATGCGAAGagaccactgtctttatttttgtaCATTGTTGATGACTGATGAAATATTTATTATCGCCCAGCGTCCCTGGATGAAATTTCAA

Function

symbol description
olig3 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in neuron differentiation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated and spinal cord motor neuron cell fate specification. Predicted to be active in nucleus. Is expressed in several structures, including brain; neural plate; neural tube; posterior neural keel; and presumptive diencephalon. Orthologous to human OLIG3 (oligodendrocyte transcription factor 3).

NR:

description
PREDICTED: oligodendrocyte transcription factor 3

GO: NA

KEGG:

id description
K09085 BHLHB1_6_7; class B basic helix-loop-helix protein 1/6/7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039784233.1 True 1640 mRNA 0.52 1 12058425 12060064

Neighbor

gene id symbol gene type direction distance location
atl2 LOC103370707 coding downstream 50747 11989367 ~ 12007678 (-)
akt3a akt3,LOC108244154,LOC107099926,LOC104931217,LOC100691860,LOC105927955 coding downstream 224355 11769396 ~ 11834070 (-)
arid5b arid5b coding downstream 400322 11584571 ~ 11658103 (-)
cep170aa cep170 coding downstream 485807 11530590 ~ 11572618 (-)
dync2li1 dync2li1 coding downstream 534287 11518901 ~ 11524138 (-)
si:ch73-52p7.1 LOC104931135 coding upstream 18592 12078656 ~ 12083832 (-)
map3k21 LOC103372805,LOC104946551,LOC102290220,LOC102205779 coding upstream 57671 12117735 ~ 12141600 (-)
rgs17 LOC103372808,LOC101482424 coding upstream 122226 12182290 ~ 12203328 (-)
ccser2a LOC104963914 coding upstream 797665 12857729 ~ 12906350 (-)
fam149b1 fam149b1 coding upstream 889846 12949910 ~ 12962921 (-)
G193248 NA non-coding downstream 41019 12017159 ~ 12017406 (-)
G193247 NA non-coding downstream 41292 12016589 ~ 12017133 (-)
G193205 NA non-coding downstream 190627 11793674 ~ 11867798 (-)
G193201 NA non-coding downstream 249869 11763663 ~ 11808556 (-)
G193191 NA non-coding downstream 342566 11715173 ~ 11715859 (-)
G193305 NA non-coding upstream 117545 12177609 ~ 12178477 (-)
G193306 NA non-coding upstream 119885 12179949 ~ 12180953 (-)
G193307 NA non-coding upstream 167044 12227108 ~ 12227308 (-)
G193342 NA non-coding upstream 276035 12336099 ~ 12336336 (-)
G193349 NA non-coding upstream 300666 12360730 ~ 12361597 (-)
adss2 adss,LOC107098117,LOC107375820 other downstream 139611 11888092 ~ 11918814 (-)
lyrm7 lyrm7 other downstream 531141 11524906 ~ 11527284 (-)
camkmt camkmt other downstream 700753 11236314 ~ 11357672 (-)
LOC120548461 NA other downstream 1095535 10956572 ~ 10962890 (-)
LOC120548128 LOC103374855 other downstream 1104402 10890469 ~ 10954023 (-)
phactr2 phactr2 other upstream 237425 12297489 ~ 12348599 (-)
G193427 dnajc9 other upstream 887631 12947695 ~ 12948609 (-)
mzt1 mzt1 other upstream 1645661 13705725 ~ 13707932 (-)
dhx32b LOC102782489,LOC102202651,LOC100703771,LOC101477466,LOC102310286 other upstream 2164604 14224668 ~ 14233001 (-)
LOC120548283 NA other upstream 2386169 14446233 ~ 14447528 (-)

Expression


Co-expression Network