atoh7 (atoh7)


Basic Information

Item Value
gene id atoh7
gene name atoh7
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 25167925 ~ 25169050 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039784234.1
CTTAGGCTGTCCACTATCTGGAGTTACGAAatacagaggacacacacatcTTGGACATCAGCCAGGCTGTAACATTAAGGAGACCTCTGAGGAACCTTGAAGCTGAACTGGAAACTTCTCTAATAAATCTGTTGACTGGTACCTGAGTCTTTCTGACCTGAGGACATATACCGGTTTGATTCTTCGACCAAATATCATGAAGTCTCGGCGACCCAGCTGCACTGACTCTGGATCCGAGTCCTCAGAACCAGACTCCAAGAGCCCGGAGAAATATGAGACCGCCACGAGGCGCCGGATGGCTGCCAATgccagagagaggaagaggatgcAGGGCTTGAACACAGCCTTTGATCGCTTACGTAAAGTGGTCCCCCAGTGGGGCCAGGACAAAAAACTGTCCAAGTATGAAACCCTGCAGATGGCTCTCAGCTACATCATGGCCCTCAACCGGATCCTGACAGACGCCAGGAAACACAACTCTGCTCCTCACAGGCAGTGGCTGGACCTGCAGTTTGACTGTGTGCAGCCTGAAAACTACCCCTGCCTCATGAGGTACGACTCTCCCACTGAACAGGACTACATCCACTCGTCCTTCTCGTATCAGTTCGATGGCCATCAGGTCCACGGATAAACTGCTGCCAATTGGTAGATAATCAGTCATGTTGTTGGATGTGAGTGACAATGTGAATATTTCTCCTTCAATCCAGGAGACAGTAAATACATTTGTAttgcattattttatttttgcatttatttagtttttgtatGTATGACTAAAAGACTTCTATTTCACTTTGAAgtcgtttttatttttgctaGGAAACCCAGCAATGTTGagcattttttttgttcaaagtATAGTAGCAATGACAGAATTGTTGTTGTGTCATCATAATGACCACTAGATTGTAAGGAAGATACAGTGTATTTGTTTCTATCAGTTATTTTGATACGGCCCTAAAATGTTGTGCAATGTTCAATGGATTCTGAGAAAATCATTGTGGTCTTAGTTGCATAGTCAAAGTCAAATTATGTAACTATTTTGTCAAAGTGTAAGTACGTGTTTGTGGAGTTGGAAAATCAATGTTATTTTTCACATGCAGACCTCTATTTTGTTGAATTATAG

Function

symbol description
atoh7 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within several processes, including positive regulation of neurogenesis; retina layer formation; and swimming behavior. Predicted to be active in nucleus. Is expressed in eye and immature eye. Human ortholog(s) of this gene implicated in persistent hyperplastic primary vitreous. Orthologous to human ATOH7 (atonal bHLH transcription factor 7).

NR:

description
PREDICTED: protein atonal homolog 7

GO:

id name namespace
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09083 ATOH1_7; atonal protein 1/7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039784234.1 True 1126 mRNA 0.43 1 25167925 25169050

Neighbor

gene id symbol gene type direction distance location
mypn mypn coding upstream 3296 25144557 ~ 25164629 (+)
sirt1 sirt1 coding upstream 29376 25131453 ~ 25138549 (+)
herc4 herc4 coding upstream 59845 25091886 ~ 25108080 (+)
LOC120547833 LOC103359796,LOC104940887,LOC102792006,LOC107088245,LOC101481961 coding upstream 78855 25085914 ~ 25089070 (+)
fam83ha NA coding upstream 83155 25075214 ~ 25084770 (+)
pkd2l1 pkd2l1,LOC104965266,LOC104921890,LOC103371634 coding downstream 2054 25171104 ~ 25177459 (+)
bag3 bag3 coding downstream 22769 25191819 ~ 25197871 (+)
inpp5f inpp5f coding downstream 29489 25198539 ~ 25213504 (+)
LOC120548364 sec23ip coding downstream 53375 25222425 ~ 25232512 (+)
pcbd1 pcbd1,LOC106525612 coding downstream 127213 25296263 ~ 25299446 (+)
LOC120547601 NA non-coding upstream 48801 25111395 ~ 25119124 (+)
G196485 eif3l non-coding upstream 218893 24947838 ~ 24949032 (+)
G196481 NA non-coding upstream 254457 24873802 ~ 24913468 (+)
G196476 NA non-coding upstream 320235 24847114 ~ 24847690 (+)
G196475 NA non-coding upstream 324073 24843443 ~ 24843852 (+)
G196558 NA non-coding downstream 9109 25178159 ~ 25181813 (+)
G196563 NA non-coding downstream 20380 25189430 ~ 25189679 (+)
G196595 mcmbp non-coding downstream 50497 25219547 ~ 25219914 (+)
G196648 pdlim1 non-coding downstream 149216 25318266 ~ 25320869 (+)
G196690 NA non-coding downstream 258593 25427643 ~ 25433896 (+)
cacul1 cacul1,LOC103374658,LOC102794354 other upstream 23671 25139047 ~ 25144254 (+)
dact2 dact2,LOC103391347 other upstream 154676 25008474 ~ 25013249 (+)
G196439 wdr11 other upstream 598758 24564550 ~ 24569167 (+)
LOC120548495 ate1 other upstream 741423 24367954 ~ 24426502 (+)
LOC120547848 LOC103369904,LOC106907288,LOC107081732 other upstream 800326 24357926 ~ 24367599 (+)
LOC120548229 rab11fip2 other downstream 312781 25481831 ~ 25495505 (+)
zgc:110045 LOC102779765,LOC102305383,LOC100704767,LOC101482925,LOC102197868 other downstream 425446 25594496 ~ 25674906 (+)
prdx3 prdx3 other downstream 444357 25613407 ~ 25620675 (+)
LOC120548053 LOC103353497,LOC102790632,LOC102299158,LOC102194143,LOC101482614,LOC100706574 other downstream 648201 25817251 ~ 25826429 (+)
stpg4 LOC103353520,LOC101467386,LOC102793681,LOC102299197 other downstream 1366234 26535284 ~ 26548760 (+)

Expression


Co-expression Network