slc1a4 (slc1a4,LOC102791775)


Basic Information

Item Value
gene id slc1a4
gene name slc1a4,LOC102791775
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 30625630 ~ 30671184 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039784239.1
TACCGGCTTCTGTGCGCATGTTCCAATGGCTTTTTGTGTCGTCGCTCATTCTCCATTGGCTCTCTCTCCACTCTGCGCTCAGCCTTCACACACACCAGACCAGCTCTTCACACAGCTGAGTGCGTGCGCCcaacgtgtgtgcgtgtgtgtgtgcatccaaCCAACGCTGCCTGGACCGGACTCAGCTTCCCACGCCGCTCTGAAGAGGAAAAATATGGAGAAAAAGAGCGCGATCAACGGGCACATGCCCAGCTCGGCGTCCACCGATCGGATCCTGGAGAAAAGCGCGCGGAAGAGCTTCAGGGAGAAGCTGATGGAGTTCCTGGGAAAGAACCTGCTGGTGATCATGACGGTGTCGGGGGTGCTGGTGGGCATCGGGCTCGGGATGATGGTCCGCAAAATGGACCTGACCAAGGCGCAGATGACCTACTTCGCCTTCCCCGGAGAGATGCTCCTCCGGATGCTGAAGATGATCATCCTGCCCCTGGTCGTATGCAGCCTCGTCTCCGGCGCCGCCAGCCTGGACACTCGCTCCCTGGGCAAGCTGGGGGGCATCGCGGTCGCCTACTTCCTGGTGACCACGCTGATCGCCTCGGGGATCGGGGTGGCCCTGGCCTTTATTATCAAACCCGGCGTGGGCGCAGGAGCCCTGAACACCAACAGCCTGGGGCTGGAGAGCGTCAGCAGCAACAAGGAGACCGCAGACTCCTTCTTAGACCTGGCCAGgAATTTATTCCCAGCAAACTTGGTGGCTGCTGCTTTCCGTTCTTATGCCACTGACTACAAGATGGTTGCTGTAGGGAACGACACCAATGGGACTGCCCTCTATCAAAAGGTTCCTATTGGTACAGAAGCAGATGGCATGAACATCCTAGGTCTGGTGTTATTTGCCATGGTGTTTGGAGTGGCGCTGAGGAAGCTGGGAGATGAGGGAGAAGAACTCATTCGTTTCTTCAACGCTTTCAACGAGGCCACCATGGTGCTGGTGTCCTGGATCATGTGGTATATCCCTTTTGGCATCATGTTTCTTGTGGGCAGTAAGATTGTGGAGATGGAAGATGTGGTTCTTCTGGTCACTAGTCTGGGAAAATACATATTTGCTTCAATCCTGGGCCACATTATCCACGGAGGTATCATCCTGCCACTAATCTACTTTGGCTTCACACGCAAGAACcccttcagtttcctgtcaggCCTCATCACGCCCTTCACTACTGCCTTCGCCACCTGCTCCAGTTCAGCAACTCTTCCCTCTATGATAAAATGTGTGGAGGAGAACAATGGTGTGGATAAACGCATCAGCCGCTTCATCCTTCCCATCGGGGCCACTGTCAACATGGATGGGGCGGCCATATTCCAGTGCATCGCTGCTGTTTTCATCGCTCAGCTTAACAATGTTGATCTGAACGCTGGACAGATCTTTACCATCTTGGTGACAGCCACAGCTTCAAGTGTCGGTGCAGCAGGCATCCCAGCCGGCGGCATCATTACCATCGCCATCATCCTGGAGGCCATCGGCCTGCCGACCAACGACCTGTCCCTTATGCTGGCTGTTGACTGGATTGTGGATCGTACCACCACGGTGGTGAACGTGGAGGGCGATGCTCTGGGTGCTGGAATTCTCCATCACATCAACCAGAAGGAGATTAAGAAGCagaaggagcagcagcagccgcaggAGGAAGGGGAGCTGGCAGAGGTCCTGGTGGAGGTGGTGGCCAAAGTCCAGGCGGAGGAGGAGAACTCGCTGTACATCATTCACCAAACCAAAGCCATGCCTGAAGCCATTGAGTCGGTCCTGTGAACTAAGCGAGACTTTTTCTCTTGCCCCCTGACCTATCGATACTTCTGATGTTGCTGCTGACCGGATACCATTCTGACTCAgtatccattaaaaaaaaaaaa
>XM_039784240.1
AGACCACCTCTCTCATACGgAATTTATTCCCAGCAAACTTGGTGGCTGCTGCTTTCCGTTCTTATGCCACTGACTACAAGATGGTTGCTGTAGGGAACGACACCAATGGGACTGCCCTCTATCAAAAGGTTCCTATTGGTACAGAAGCAGATGGCATGAACATCCTAGGTCTGGTGTTATTTGCCATGGTGTTTGGAGTGGCGCTGAGGAAGCTGGGAGATGAGGGAGAAGAACTCATTCGTTTCTTCAACGCTTTCAACGAGGCCACCATGGTGCTGGTGTCCTGGATCATGTGGTATATCCCTTTTGGCATCATGTTTCTTGTGGGCAGTAAGATTGTGGAGATGGAAGATGTGGTTCTTCTGGTCACTAGTCTGGGAAAATACATATTTGCTTCAATCCTGGGCCACATTATCCACGGAGGTATCATCCTGCCACTAATCTACTTTGGCTTCACACGCAAGAACcccttcagtttcctgtcaggCCTCATCACGCCCTTCACTACTGCCTTCGCCACCTGCTCCAGTTCAGCAACTCTTCCCTCTATGATAAAATGTGTGGAGGAGAACAATGGTGTGGATAAACGCATCAGCCGCTTCATCCTTCCCATCGGGGCCACTGTCAACATGGATGGGGCGGCCATATTCCAGTGCATCGCTGCTGTTTTCATCGCTCAGCTTAACAATGTTGATCTGAACGCTGGACAGATCTTTACCATCTTGGTGACAGCCACAGCTTCAAGTGTCGGTGCAGCAGGCATCCCAGCCGGCGGCATCATTACCATCGCCATCATCCTGGAGGCCATCGGCCTGCCGACCAACGACCTGTCCCTTATGCTGGCTGTTGACTGGATTGTGGATCGTACCACCACGGTGGTGAACGTGGAGGGCGATGCTCTGGGTGCTGGAATTCTCCATCACATCAACCAGAAGGAGATTAAGAAGCagaaggagcagcagcagccgcaggAGGAAGGGGAGCTGGCAGAGGTCCTGGTGGAGGTGGTGGCCAAAGTCCAGGCGGAGGAGGAGAACTCGCTGTACATCATTCACCAAACCAAAGCCATGCCTGAAGCCATTGAGTCGGTCCTGTGAACTAAGCGAGACTTTTTCTCTTGCCCCCTGACCTATCGATACTTCTGATGTTGCTGCTGACCGGATACCATTCTGACTCAgtatccattaaaaaaaaaaaa

Function

symbol description
slc1a4 Predicted to enable symporter activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including alar plate midbrain region; nervous system; optic vesicle; pancreatic system; and yolk syncytial layer. Orthologous to human SLC1A4 (solute carrier family 1 member 4).

NR:

description
PREDICTED: neutral amino acid transporter A

GO:

id name namespace
GO:0006835 dicarboxylic acid transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0017153 sodium molecular_function

KEGG:

id description
K05615 SLC1A4, SATT; solute carrier family 1 (neutral amino acid transporter), member 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039784239.1 True 1905 mRNA 0.55 8 30625630 30671184
XM_039784240.1 False 1198 mRNA 0.51 8 30632467 30671184

Neighbor

gene id symbol gene type direction distance location
sertad2b sertad2,LOC104932742 coding upstream 25021 30506054 ~ 30600609 (+)
nvl NA coding upstream 289470 30267788 ~ 30336160 (+)
cdt1 NA coding upstream 662540 29956720 ~ 29963090 (+)
pcca pcca coding upstream 927487 29659412 ~ 29698143 (+)
LOC120548236 LOC103357099,LOC103387711 coding upstream 970579 29646723 ~ 29655051 (+)
LOC120548109 LOC102195401,LOC103353517,LOC102300597,LOC106939791 coding downstream 40389 30711573 ~ 31005023 (+)
ogfrl1 ogfrl1,LOC104917660,LOC103363704,LOC100701482 coding downstream 512136 31183320 ~ 31198691 (+)
LOC120547952 rims1,LOC102777706,LOC102298248 coding downstream 671775 31342959 ~ 31493220 (+)
bcl11aa bcl11a,LOC103363701,LOC102779517 coding downstream 841680 31512864 ~ 31573621 (+)
fancl fancl coding downstream 1773903 32445087 ~ 32483666 (+)
G197889 NA non-coding upstream 137072 30488250 ~ 30488558 (+)
G197887 NA non-coding upstream 138217 30487115 ~ 30487413 (+)
G197885 NA non-coding upstream 142201 30483208 ~ 30483429 (+)
G197883 NA non-coding upstream 143217 30482132 ~ 30482413 (+)
G197877 NA non-coding upstream 148056 30477340 ~ 30477574 (+)
G197854 NA non-coding downstream 3028 30674212 ~ 30674482 (+)
G197958 NA non-coding downstream 279176 30950360 ~ 30954271 (+)
G197982 NA non-coding downstream 527771 31198955 ~ 31200000 (+)
G197983 NA non-coding downstream 529672 31200856 ~ 31202473 (+)
G197991 NA non-coding downstream 534907 31206091 ~ 31206356 (+)
LOC120547658 NA other upstream 423810 30153511 ~ 30201820 (+)
LOC120547718 LOC102789565,LOC100690068,LOC101471749,LOC103357097 other upstream 1006614 29518941 ~ 29619016 (+)
G197531 NA other upstream 1275702 29348425 ~ 29349928 (+)
LOC120548242 ccdc85a,LOC104955469,LOC102783086,LOC102310250,LOC102209339,LOC100696856 other upstream 1448136 29112688 ~ 29177494 (+)
ccnj ccnj,LOC102785723 other upstream 2323297 28294205 ~ 28302333 (+)
G197999 NA other downstream 563180 31234364 ~ 31234723 (+)
G198185 NA other downstream 2122104 32793288 ~ 32794661 (+)
G198245 rab1a,LOC104962072,LOC102231865 other downstream 2291204 32962388 ~ 32965074 (+)
slc2a15a LOC103367959,LOC104935160,LOC103476520,LOC106961144,LOC103155793 other downstream 2486545 33157729 ~ 33199862 (+)
si:ch211-51a6.2 LOC104924867,LOC103357113,LOC100694100 other downstream 3310327 33981511 ~ 34008003 (+)

Expression


Co-expression Network