LOC120548189 (LOC103376442,LOC100702930,LOC102197432)


Basic Information

Item Value
gene id LOC120548189
gene name LOC103376442,LOC100702930,LOC102197432
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 34691392 ~ 34710745 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039784270.1
CGTTCCTGCCTGCTCTGTGGGGTTTTTCTAAGGTCGGGAAGCTAGATTACGCGCAAGGACAGCACATACACAGGACCAAAACAAAGCGCGCTGTCGTTCACCGCGGGGAACCGTCTGTCTGCCGTGCAGGAGCATCTCTGACTGAAAGAGGACAAAACAGAGCACGATGTCAGCcagaggaggaaagaagaaggCCACCAAGCTGTCCCGTTCAGCCAGGGCAGGCGTCATCTTTCCTGTGGGAAGGATGATGAGGTACCTGCGCACCGGCACGCACAAATACCGCATCGGCATGGGGGCGCCTGTCTACATGGCAGCAGTTATTGAGTACCTGGCAGCTGAGATCTTGGAGTTAGCAGGAAACGCAGCGCGGGACAACAAGAAAGGCAGAATAACTCCCAGACACATCAAGCTGGCTGTGGCCAACGACGAGGAGCTCAACCAGcttcttCGGGGGGTGACCATATCTAACGGAGGGGTTCTGCCTCGGATCCATCCAGAGCTGCTCTCCAAGAAGAGGGGAGGCCGGGTGAAAGCAGAAAGCCAGGCGTCCATCCCCGAGAAGCAGGAAGAACGCTCAAAGAGCAAGAAACCCGTCAGACCCTTGAAAAAGGTTAAAGGCAAACGAGGCCGCAAGCCAAAGAGCACAGACAACGAGTCTGTACCAAACTCCACAGTAGAAGACGGCCCGGGAGATGGATTCACCATCCTGTCAGCAAAGAGCCTGTTCCTTGGACAAAAGCTTTCACTAACAGAGAGTGAAATCAACAAAATTGGAACAATCAAAGTGGAGGGAATAATTAACCCAACAAATGCAGAGATGGACCTTAAAGACGGAGTGGGAAATGCCTTGGAGAAAGCTGGAGGCCGAGACTTCCTGGAGGGAGTCAAGGAGCTGCGGAAAGCACAGGGGCCTTTGGAGGTGGCATCAGTGGCAGTGAGCCAGGCCAGTGGGATGGCAGCCCGCTTCATCATCCACTGTAACGTCCCTCAGTGGGGGTCAGAGAAGTGCGAGGACCAGCTAGAGAAGACGGTGAAGAACTGCCTCTCCGCAGCCGAGGAGAAGAAGCTCAAGTCTGTGGCTTTCCCTTCACTCCCTGCTGGACGGAACGGATTCCCCAAACAAACGGCTGCCCAGCTCATCCTCAAGGCCATCTCCAACCATTTTGTGTCATCCACCAGCTCCTCTCTGAAAAACATTTACTTTGTTCTGTTTGACAGCGAGAGCATCGGAATATACCTTCAGGAAATGGCCAAGCTGGACGCCAAGTGAGGATTCTTGTTCTAGGGGATTGTTTTTCTAACTGTTGTTTGTTGCAGGTGGTGTAGATGGGTTATATGACAGTAGGGGGGTTTGATGTGGAATCTGTCTTggttaaagaggaaaaaaaatatgtgtgaGTGGAGTGCTGTTCACATTTATGTTCCACTGTCCCGTCAAGAGATTGCATTCTTTATAGATTAGATAATTTAAATTCGTACAGTTTGCCATTATGGTTCCTTGTTTCAATGATGTTTTTACATTCCATGTACAAATATAACAGTTTTCCTGGCCTCTGTAGTTTCTGATACAGTTAGTTTACTAAAAAACTGTGGTTCTCATTCTGCTTTAATAAAACTCAGATGTTTTACACCAGAGATCCACACTTAA

Function

NR:

description
PREDICTED: core histone macro-H2A.2

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0000786 nucleosome cellular_component
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K11251 H2A; histone H2A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039784270.1 True 1651 mRNA 0.50 9 34691392 34710745

Neighbor

gene id symbol gene type direction distance location
si:ch211-250c4.3 NA coding upstream 424180 34208791 ~ 34267212 (+)
fbxo28 fbxo28 coding upstream 512126 34164935 ~ 34179266 (+)
polr1c polr1c coding upstream 532618 34142536 ~ 34158774 (+)
si:dkey-191g9.7 NA coding upstream 553133 34130003 ~ 34138259 (+)
ndst2a ndst2 coding upstream 566519 34092137 ~ 34124873 (+)
pitx3 pitx3,LOC108239172,LOC106916517 coding downstream 157834 34868579 ~ 34892999 (+)
LOC120548589 NA coding downstream 163705 34874450 ~ 34874577 (+)
eno4 NA coding downstream 331183 35041928 ~ 35080823 (+)
kcnk18 NA coding downstream 568200 35278945 ~ 35295506 (+)
LOC120548394 slc18a2 coding downstream 714729 35425474 ~ 35490817 (+)
G198683 NA non-coding upstream 19226 34671918 ~ 34672166 (+)
LOC120547566 NA non-coding upstream 37330 34633305 ~ 34654062 (+)
LOC120547565 NA non-coding upstream 87019 34598539 ~ 34604373 (+)
G198654 NA non-coding upstream 98303 34592597 ~ 34593089 (+)
G198635 NA non-coding upstream 195142 34495736 ~ 34496250 (+)
G198696 NA non-coding downstream 2783 34713528 ~ 34713880 (+)
G198739 NA non-coding downstream 247332 34958077 ~ 34962980 (+)
G198756 NA non-coding downstream 319187 35029932 ~ 35030273 (+)
G198778 NA non-coding downstream 386774 35097519 ~ 35097847 (+)
G198786 LOC100701856,LOC101472718,LOC106513841,LOC108239171,LOC102791659 non-coding downstream 457125 35167870 ~ 35202138 (+)
si:ch211-51a6.2 LOC104924867,LOC103357113,LOC100694100 other upstream 683389 33981511 ~ 34008003 (+)
slc2a15a LOC103367959,LOC104935160,LOC103476520,LOC106961144,LOC103155793 other upstream 1491530 33157729 ~ 33199862 (+)
G198245 rab1a,LOC104962072,LOC102231865 other upstream 1726318 32962388 ~ 32965074 (+)
G198185 NA other upstream 1896731 32793288 ~ 32794661 (+)
G197999 NA other upstream 3456669 31234364 ~ 31234723 (+)
LOC120548523 NA other downstream 184438 34895183 ~ 34948460 (+)

Expression


Co-expression Network