mcfd2 (mcfd2)


Basic Information

Item Value
gene id mcfd2
gene name mcfd2
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 26619417 ~ 26622570 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039784275.1
GGCAAGCCACTTGGTCCTCAAAGGTTGTGATTGATCATTGTTGCCAGCCAACTAGTAAAACAACATAACTGTCCACGGAGTCAAGTGAAGATAGGCAAGGGATAAATATTTTCAGAATGAGCAGTTGCAGGTGTAGTGTGCAGTGGGGGGGtctgctcctcctcctgtcctgctgtctgctgtgtgtTGACTCTCAGGTGGAGTCACAGCCTCAGCAGCAGCCTCCCCCGCCGGTCATAGACAGTGGAGCCTCCATATCCGGCCACGCTCACGGCCGCCTGGACAGAAACATGGTCCAGGACAAAGACCACATCATGGAGCATTTAGATGGAATGATAGACAAACCAGAGAAAGAAATGACACCCCAGGAGCTTCAGCTGCACTATTTCAAGATGCACGATTATGATGGCAACAACCTGCTGGATGGACTAGAGCTAGCCACAGCTATCTCACATGTACACCGAGAGgagagaggagaggacagccAGCCGTTGAAAGAGGAGGACCTCATCACTCTCATTGATGATGTTCTCAAGGACGATGACAAGAACAATGACGGTTACATAGATTATGCAGAGTTTGCCAAATCGCTGGAGTAAGATGTCCCCTGAGAACTTACACACTTCAtaccaacaacaacagcaacaacaacaaggaaTCTGCAGAGAAAAGAAGGCCAACTGAGTAGCCACCAAGCTGTCTTGGAAAACCATTGTTTACTCTTTGCTTTCTCTCTCGCAGGCGATCAGTCAGGGCTATTGATAATTTATAAGgtttgggacatt
>XM_039784276.1
GCTACGGCAAGCCACTTGGTCCTCAAAGGTTGTGATTGATCATTGTTGCCAGCCAACTAGTAAAACAACATAACTGTCCACGGAGTCAAGTGAAGATAGGCAAGGGATAAATATTTTCAGCAGAATGAGCAGTTGCAGGTGTAGTGTGCAGTGGGGGGGtctgctcctcctcctgtcctgctgtctgctgtgtgtTGACTCTCAGGTGGAGTCACAGCCTCAGCAGCAGCCTCCCCCGCCGGTCATAGACAGTGGAGCCTCCATATCCGGCCACGCTCACGGCCGCCTGGACAGAAACATGGTCCAGGACAAAGACCACATCATGGAGCATTTAGATGGAATGATAGACAAACCAGAGAAAGAAATGACACCCCAGGAGCTTCAGCTGCACTATTTCAAGATGCACGATTATGATGGCAACAACCTGCTGGATGGACTAGAGCTAGCCACAGCTATCTCACATGTACACCGAGAGgagagaggagaggacagccAGCCGTTGAAAGAGGAGGACCTCATCACTCTCATTGATGATGTTCTCAAGGACGATGACAAGAACAATGACGGTTACATAGATTATGCAGAGTTTGCCAAATCGCTGGAGTAAGATGTCCCCTGAGAACTTACACACTTCAtaccaacaacaacagcaacaacaacaaggaaTCTGCAGAGAAAAGAAGGCCAACTGAGTAGCCACCAAGCTGTCTTGGAAAACCATTGTTTACTCTTTGCTTTCTCTCTCGCAGGCGATCAGTCAGGGCTATTGATAATTTATAAGgtttgggacatt

Function

symbol description
mcfd2 Predicted to enable calcium ion binding activity. Orthologous to human MCFD2 (multiple coagulation factor deficiency 2, ER cargo receptor complex subunit).

NR:

description
PREDICTED: multiple coagulation factor deficiency protein 2 isoform X1

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K20364 MCFD2; multiple coagulation factor deficiency protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039784275.1 False 785 mRNA 0.48 4 26619422 26622570
XM_039784276.1 True 793 mRNA 0.49 4 26619417 26622570

Neighbor

gene id symbol gene type direction distance location
calm2a calm1,LOC102778633,LOC102293206,LOC107396020 coding upstream 87691 26527783 ~ 26531726 (+)
si:ch73-105b23.6 LOC104955877 coding upstream 97840 26495508 ~ 26521577 (+)
plekhh2 plekhh2 coding upstream 142690 26414524 ~ 26476727 (+)
trnai-uau_2 NA coding upstream 636579 25982745 ~ 25982838 (+)
hcar1-3 NA coding upstream 638980 25977457 ~ 25980437 (+)
LOC120547700 plac9 coding downstream 135763 26758333 ~ 26767338 (+)
LOC120547537 NA coding downstream 243055 26865625 ~ 26873668 (+)
valopa valop,LOC104938804,LOC106940109,LOC107093123 coding downstream 554398 27176968 ~ 27206666 (+)
LOC120548504 kndc1 coding downstream 1185734 27808304 ~ 27878568 (+)
vox NA coding downstream 1263673 27886243 ~ 27887609 (+)
G197029 NA non-coding upstream 79282 26539844 ~ 26540135 (+)
G197027 NA non-coding upstream 86183 26533032 ~ 26533234 (+)
G196967 NA non-coding upstream 308131 26291118 ~ 26311286 (+)
LOC120548056 NA non-coding upstream 489886 26122891 ~ 26129531 (+)
G196935 NA non-coding upstream 501777 26117101 ~ 26117640 (+)
G197035 LOC104925924,LOC104948680,LOC103376065 non-coding downstream 2065 26624635 ~ 26627702 (+)
G197069 LOC103370964,LOC104925911,LOC102295618,LOC103148144 non-coding downstream 117687 26740257 ~ 26746085 (+)
G197084 nkx6-2,LOC102789131 non-coding downstream 442156 27064726 ~ 27104508 (+)
G197087 NA non-coding downstream 493396 27115966 ~ 27116514 (+)
G197089 NA non-coding downstream 520001 27142571 ~ 27142786 (+)
stpg4 LOC103353520,LOC101467386,LOC102793681,LOC102299197 other upstream 70657 26535284 ~ 26548760 (+)
LOC120548053 LOC103353497,LOC102790632,LOC102299158,LOC102194143,LOC101482614,LOC100706574 other upstream 792988 25817251 ~ 25826429 (+)
zgc:110045 LOC102779765,LOC102305383,LOC100704767,LOC101482925,LOC102197868 other upstream 944511 25594496 ~ 25674906 (+)
prdx3 prdx3 other upstream 998742 25613407 ~ 25620675 (+)
LOC120548229 rab11fip2 other upstream 1123912 25481831 ~ 25495505 (+)
G197053 NA other downstream 40589 26663159 ~ 26663785 (+)
tmem254 NA other downstream 103146 26725716 ~ 26735787 (+)
pwwp2b pwwp2b other downstream 251645 26874215 ~ 26953805 (+)
LOC120547882 inpp5a other downstream 303848 26926418 ~ 27109140 (+)
LOC120548261 LOC102312438,LOC102207415,LOC101470427 other downstream 829380 27451950 ~ 27511592 (+)

Expression


Co-expression Network