LOC120548236 (LOC103357099,LOC103387711)


Basic Information

Item Value
gene id LOC120548236
gene name LOC103357099,LOC103387711
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 29646723 ~ 29655051 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039784340.1
TTTCTTCGCCTCCGTTCACCTCCATTCACACagtaaataaaagcatggaggCTCCGACTCTCGGGATCTAATACCGAACAGCGGGGGGTAAAGACACCGCATGCGCTCTCCCTTTcaccaaaacacacaggaaggaaGCAGGACAGCGGCGGACGCTTTGCCATTTGGATTTAACTCGTTTTACGTGGAAGAGAGGGTTGTAGTTGGAGAGGAGCGGGGCAGCCCGCCGTGCTGAGCATGAAGCGGACGGCTGTAGTGGCCAGGCACAATGGCCTCGTCTCTCCGCTGGGGAACAACAACTCCGGGGCTTCGAGCATCGTCTCACCACCACAGCCGAGAGCCACTAGTATCTCCGCTTCTGCCGACAGTGGTGTTGGCGGTGGGATGGACGGCCTGCTGGATTTCTCCAAAGGCCCCACCGTCAAAACCGAGCTGGTCTGTAAATGGATTGACCGAACTTCTTCGAGACCGAGGCTTGGGCGGACGGCGACATCCGTCTGCGACCAAACTTTCAGCTCCATGCACGAGCTGGTGGACCACGTCACCACCGAGCATGTAGCAGCGGGGCTCGAGACCCTCAGTCATGTCTGCATGTGGGACGAGTGTATGCGCGGCGGGAAGGCATTCAAAGCCAAATACAAACTCATCAACCACATTCGCGTGCACACCGGGGAGAAGCCTTTTTCATGCGCATTTCCCAACTGCGGCAAGATGTTCGCACGCTCCGAGAACCTCAAGAtccacacgcgcacgcacactgGTGAGAAGCCATTCCAGTGTGATTATTGTGAGCGACGCTTCGCCAACAGCAGCGACCGGAAGAAGCATTCACAGGTCCACACAGCCTCGAAGCCCTACGACTGCAAAGCCCTGGGCTGCACCAAGTCCTACACCCACCCCAGCTCCCTGCGCAAACACATGAAGGTTCACGTCAAGTCGTCACCTACCTCTGAACCCCAGGACGTGTACGACTCCATCCCTCATCAACTccaacaacctcatcaagccctCCTCGAGCCCCTCGACCTTAAAATGAATCGCCTCTCTCCATCACTTgccaataaaaacacaaattttcCTCTCCTGTCCAATCACCAATTGGATATCAGCTCAGCCAGCGAAGTTGACCATAAGCTGCTGCTGCGGAGTTCATCGCCAATGACAATGCctctggatctctctctgtcaggcCTGAAGAGTCAGCTGGCCCAGAAGCAGCAGAGTGGTAGGACCCAGCGGAGGAGCCAGCGCTCAGTCAACCCAGCCTTACCTCAGTTGTCTAACATTAAGGAGTGGTATGTCTGTACCAGGAGTACAGCACCACACTTTCCTCTACTTCACCCAGACCACATCAAATCAGAACCTAGTGATGATGAGGAGTATGTCACGTAGGACGGAGGGACTGAGAATTTGGTCTTGATGAACATATATTATCAGACCCAGGTCAGGCCAAGAGAATGCTCTGTGGAATCATAGTTGCTGTAAATTTCCAGAACCAGCAGTTGTATGGTTCAACATCAGAGGCCCTGCTAAGATGGAGAAGGCTGTGATCAGATGGAgaccttttttttactttgtctcTAATACAAAACTCAGCTTGGCGATCATCACTATCTGTGGACCGAAAAGCAATGGCTCAAATGTTGTCAGAAGGGACAAGAGGAATTCCATCATTATGGTTATCAAACAAAATGTTTGACAAAAAAACTGCAAGATATCCAATCAGTGCTAGCTAGCTTACCTGAGCTAACAAAGGGGATGACATTGTACAAATGGACCAGGCGATGTTGGGTACTGCTCTGCTTGCTTTTAAAGAATATGAAGAGGGTGTGTGTACATGATGACCTCTCTAGGGAGACAGATTATTGACCAATTTATCTAAGCGCTCCACCTAAATGAAGCAATTTTAAGGGCTACATTGACACTGATAGAAGGTGGTTAATGTTATCCTGAGGTCAATATAGCTCTGTACACATGGTACCCCGACAGGTCCAAAACAGCAGGCACACAGGTTGGAGGTGAGCGTGTGCCTGTTATGGCCCCAGTATGTTTTAAACAAACTAGTTTGTACATCAGATCAGAAATTGTTTGAAGCAGCTGATTTTGCGGTCAGAACGGGGTTTTTAAATGCTGTTAGGTGATCAAGCACTTTGTTTAAAGCAAACTGATGCCTTTACTTATAAACCATTGGTAGTAACTTGTTCAAACGTGTTTTATGTGATCACAGTCTAATCCAACACAGTAGCCAGCAGTGAAGCTACAGTTTGAAGACCATAGGGACTGTTCCTTCTTTGTACTGATCATTAAGTGTCTTCTTAACCTCTTCAACTCTATGGACCTTTCAGTGGGTTAATTGCCTGCATCTGTTTACACTCCATCTACAATTAAGTCAAGACCCCAAGGTTTCCAAAATTACCATATATGTCATACACATATTCCTTTAACATGAAAATGTGTATTAAATGATGCACAAGACATCTATTGTTTTCCCTTTGATCAAATGGTGCAGCCATAAAAAGTGGAATCTTGGATTTGAAAATTTACTCAATGTCGCTTCAATGAATCAACGAAACGAGCAGAATGTATTGTGAAAGATTGTGGTAGAGCTTGGAAAAATATTTTGTCTATGTTTGAACTTACTGCATTGAGAACACTTTAAACTTAGTAATAAGTGACTTATATCAATATACATTATCCATCAACTAGTAGGACATATCAAGCTGGATTTGAACCTGAGTTCTAAGAAAATCTAGCTGAAGCAGATTGTTTAAACATACAATGAGACagaatttaaattatattttaaagggaaattaaggctgatttatggttGTACGTGACTCTACGTAGAGCCTAAGTAAGTGGCTTATGCCGTTGTGAGGATTTATACTTGTGTGCTACTGTGTCTGCGTCATTCTAGCGCATGTCTTTAAGAGAATTGAAGAGCAGAGCCAGTATGtagtatgtgcgtgtgtgcccttgatttttggttttaaaGTGTGTACAACCCAGGTCTTACAACCTTAAAACTGAAAGTGAGCACACCTGAAATCTCTCTAATAATCCCTCATTGCACAGGAAAACTGGGTGCAGTAAGTAAGTACAGTACATCAAAATTGGAGTAGGAAGTGAGTCTGTAAACTGTGATGGATGTTCTCAAGGGTTATCTTGGGAAATCATTTTAGTGTTTATCTTCCAAGTACGTTTGGCTAATGTGGGGGTTTGTTTAAAACCTTTTAAGTCACTTTTCCCCCAAGCTATTAACTTAGTGTGTACATTATTATTACTGGCAGGAATGATGGACAAAACAGCAAATAACACCAAGGTTGAATGAAACTGGAATTTCCCtttaaacaatttaaatgaTTTGAGAATTGTGAGtttcaatttcatttaggtTTACTTACGACAAATCAATCTGGAAGTCATGAGTGGAGAGGGTACAGGGAAGTATATATAGTAAGTGCAGAACAAAATTGGACAGACAGAATTGTGTCATTAAAGTTTTGATTCTCAAGCAATAATCTCTAGACAAGAGCAAGCAACTACTCGCACCCAGTTTATGAAGTTCGTATTATTTTCATGGTCATCACGTTGAAACAGTGATTTGCACCATCACCTCACAGTTGTGGCCTTTCTGTAGGGAGTTCACATGTCTGTGTGGGTTTTCTCCCACAGTCCAAACACATACAGGTCTGATTAATTGGAAACTGAATTAGCTGTAGGTGTGAATAGTTGTCTGTCCATATATGTGGTAACTTCTCAAGGTGTACCATGCCTTTCACACAATGTGAGTTGGGATAGGCTCCAGCTCTCTGTCTCATGTTATCAAGTGCTCAGAATCTCTCAGCTAATGAAAACTAGGAACTACCCAATCAGCTTGTTGCTTCAAATTGTTTGAGTACAAATCTGTCCCTGGGTTATCATAAATGTTGCCCTACAGATTGATTAATTTTGCCTCGTGATAGGGCAGACATTTCAGAGTTATTGATCACTGAATAgcacatatttgttttaaagAGAAAGGCTTTTTGATGCAGTATCACACCATGACCACCAGAACTCATTGAAGGTTTCCAATTCAGACACCTTCTGAACAATTCATTGTCTAAAAACATGTTCAACGCAGCAGATGCAAGATACAGTCAGCTAATATGAACTCCAGTGAGATCAACATTTCCTTTCACCCTTTCCCACCCCAACCCTCTGAATTAGCAACACTAAGTCACAATGATGTGTGAGTAAACGAGTGAATAAGAAATTTAATTAAAACCAACCAACCTTA

Function

NR:

description
PREDICTED: zinc finger protein ZIC 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039784340.1 True 4285 mRNA 0.44 2 29646723 29655051

Neighbor

gene id symbol gene type direction distance location
LOC120547721 LOC103357097 coding upstream 13962 29628731 ~ 29632761 (+)
LOC120547808 NA coding upstream 88388 29557263 ~ 29558335 (+)
LOC120547961 LOC103372209,LOC104933668 coding upstream 792500 28817833 ~ 28854223 (+)
si:dkey-187a12.4 LOC104933667,LOC104950525 coding upstream 845347 28790784 ~ 28801376 (+)
LOC120548038 tuba1c,LOC108255233,LOC103148207,LOC108247626,LOC106920718,LOC101079871,LOC101066234 coding upstream 856818 28787046 ~ 28789905 (+)
pcca pcca coding downstream 4361 29659412 ~ 29698143 (+)
cdt1 NA coding downstream 301669 29956720 ~ 29963090 (+)
nvl NA coding downstream 612737 30267788 ~ 30336160 (+)
sertad2b sertad2,LOC104932742 coding downstream 851003 30506054 ~ 30600609 (+)
slc1a4 slc1a4,LOC102791775 coding downstream 970579 30625630 ~ 30671184 (+)
G197571 NA non-coding upstream 175767 29470012 ~ 29470956 (+)
G197568 NA non-coding upstream 188287 29457418 ~ 29458436 (+)
G197532 NA non-coding upstream 236736 29351706 ~ 29409987 (+)
G197530 NA non-coding upstream 264117 29332515 ~ 29382606 (+)
G197635 NA non-coding downstream 49036 29704087 ~ 29705013 (+)
G197636 NA non-coding downstream 53692 29708743 ~ 29710005 (+)
G197654 NA non-coding downstream 113425 29768476 ~ 29779051 (+)
G197679 NA non-coding downstream 314739 29969790 ~ 29977939 (+)
G197686 NA non-coding downstream 339530 29994581 ~ 30000931 (+)
LOC120547718 LOC102789565,LOC100690068,LOC101471749,LOC103357097 other upstream 27707 29518941 ~ 29619016 (+)
G197531 NA other upstream 296795 29348425 ~ 29349928 (+)
LOC120548242 ccdc85a,LOC104955469,LOC102783086,LOC102310250,LOC102209339,LOC100696856 other upstream 469229 29112688 ~ 29177494 (+)
ccnj ccnj,LOC102785723 other upstream 1344390 28294205 ~ 28302333 (+)
LOC120548047 adgra1,LOC103360772 other upstream 1865682 27554928 ~ 27781041 (+)
LOC120547658 NA other downstream 498460 30153511 ~ 30201820 (+)
G197999 NA other downstream 1579313 31234364 ~ 31234723 (+)
G198185 NA other downstream 3138237 32793288 ~ 32794661 (+)
G198245 rab1a,LOC104962072,LOC102231865 other downstream 3307337 32962388 ~ 32965074 (+)
slc2a15a LOC103367959,LOC104935160,LOC103476520,LOC106961144,LOC103155793 other downstream 3502678 33157729 ~ 33199862 (+)

Expression


Co-expression Network