ttl (ttl)


Basic Information

Item Value
gene id ttl
gene name ttl
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 25769647 ~ 25778043 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039784346.1
TCGACAGTGGATGACAGCGACTGCTGCTGAGAGCTTCAGATCATACGCCGCCGTGGGAAAATAAGCTGcgtttgtgtagctaactaacgttaggtAGTTAGTTCACGTTTCGTACTAtttattattaaagtatttgtCTTTGAGGAGAGATCGCAGGAAAAGTTTCCTGAATAGCTGTTCATAGCGGTAGCAGCCCGTTAGCTAAAGCTAAACCGGAGACGGGATCTTAATTAATCCAGACGGGACCAACCCCAGGAGCCGGGTAGCAGCAGTCAGTCACACCCTTGTCTGGGGTTAGTGAAGGAACCCTGTATGCGCAGAAATCTTAAATTTCTTCCCGTCACATGTTACaatggtttttttttacaaataaatgttAGCCTCAGACTAAATTTGGAGCTTCGGACCAATATTGTGAGTTAACTGGGAAGTGTGGACTGGATATGACTGACTCATCATCATGGCACGGACAGAGGAGATAACCCTGAACAGTCCGTCTGCTGCAGTGCCAACCAGACAGTCTCGTAACTAGCTAGACAACTGAGTTACACATTCGATCGTTTCTATTATATATTTCACTTCGCGGTGAACGTGGCATTATGAATACCCCGATGTACACGTTTGTTTCCCGTGACGACAACAGCACGGTTTATGCAGAAGTTTCCAAAATCCTCCTCTCAACCGGACAATGGAAGAGGCTGAAAAAAGACAATCCCAGATTCAACTTAATGCTTGGGGAACGGAACAGACTGCCCTTTGGACGTCTggGCCACGAACCAGGACTGGTTCAGCTGGTGAATTACTACAGAGGAGCAGACAAGCTGTGCAGGAAGGCGTCATTGGTCAAGCTAATAAAGACCAGCCCGGAGCTGTCTGACTCCAGTAACTGGTTTCCAGAATCCTACATCATCTATCCTACCAACCTCAACACCCCTGTTGCTCCAGCTACAAATGGCATTAGCCATCTGAAGAACAATCCCAAGACGGATGAGCGAGAAGTTTTCTTGGCCTCCTATCACTCTAAAAAAGAAAGTGGGGAGGGCACAGTGTGGATAGCCAAGTCTTCTGCCGGAGCTAAGGGTGCTGGTATTTTGATATCCCATGATGCTAATCAGCTGCTGGAGTACATTGATAATCAGGGACAGGTTCATGTTATTCAGAAGTACCTGGAGAAACCTCTGCTTCTGGAGCCGGGACATCGGAAGTTTGACATCAGGAGCTGGGTGCTAGTGGACCATCACTACAACATCTATTTATACCGGGAGGGTGTGCTGCGGACGTCCTCAGAGCCCTACAACAGCTCTGACCTGCAGGACATGACCAGCCACCTGACCAACCACTGCATCCAGAAGGAGCACTCCCAGAACTACGGCCGATACGAGGAGGGGAACGAGATCTTCTTTGATGAGTTCAGGCTGTACCTGCTGAACACTCACAATGTCACCCTGGAGACCAACATATTACCTCAGATCAAGCACATCATAAAGAGCTGTCTGACATGTATCGAGCCGACAATCAGCACCAAGCACCTGTCCTACCAGAGCTTCCAACTATTTGGATTCGATTTCATGGTGGACGAGAGCTTCAAAGTCTGGCTCATTGAGATCAATGGAGCTCCAGCCTGTGCACAGAAACTATATCCAGAGCTGTGTCAAGGTATCGTGGACGTGGCCGTTTCCAGCGTCTTCACCATGAACAGCGGCGGTGACTGCCCATCTGCTTCCTCTTCACCTTATTCGTCCTCCCCATCCTCCACGTTCACCACCAACTCCTGCTCCTCTCCCAAACTGAGAGGGCCTCTTCACGTGGGCCCTTTCACTCGGCTGTAAGCACACGCGAATATTCCCCTCGTCTCCTCCGTACACGCTTCTTTCATGCTCTGTCCTCACTCCTCAACTCTAGCTGAGAAGCAGCACATGGCAGCGAGCCCAGCCTTTAATTGTACCTTGCCTGTCACGCCTGAAGGGAGTCTTTCTTTCTATGGAGAGCACTGAGCGCCAGAAATGATCTCTGCTCTCCCGGTTATGCATATTATAACGAATGTGAGGATGGGGACGAACGGATCAACAAACTTTTCCGGGAGTTTCTGAGTGAGGACAGACGCCCTTCCATCTCAGTCCCACCACCAGTTTCTCCACAAGCAGATTAATGGAGGACTGAAGGATGCAGAGACGCTCAAACTGAGACTGTAGTGCCTTACATTTCCAGCCACGCTCCCTTAAAAAAAGACTGCCAGTTAGCTTGCTCTGTCACTGTGGCTTGTACTTGTTCTATACGCCTTTGCACTGTTGCTCAGTAAAGTCAATGGGGTCATGGTCAGTCGGCAAGAATTAGCTTAAAAACGTATTACTTGACATGTGAGATCTTAGTGAATTTGTGTAAATTGGAATGCTATTTATCTCATGAGacacatttttatcttttttttgttttatttgcagcTTACCTGCAGCTATCTGTGCCCCTTAGTTTCATAGGAATGCTAAAAGCGATCAAGAGTTGTTAAAACTTACAAAGACTTGTATACTAACCCGATGTGTCTTTATGAGCCACACATTCAAGACGTCAAGGTTTGCCTTGAAAATCAACATTCCTCTAAACTTAGCCATGTGGACGCCATATTTAATTTGCGTTTAGGACAGCAACAAGGAGGCCGTCCTTCATCTGGTAAACCAAGGTTTAAGTCCGTCCTAACAAGTGTCCCTGACCCCTGACCTCTCTACAGCAGAGAGGAAAGACAAGTATTAGCCTGCAGTATTCTGTTCTCAACTCATTCTTCTACAAAATAGTCCAGCTGAAGACTATTTGGGCATTTTATTTGTCATCTGAAGAGAGCATGTTTGCGTGAAAGCATGTAGTAGAATGCATCCTCATACAAGCCCCCACAGCACTTGTTTGTCCCAGTTTGTAGAGCTGCCCTAATGACTGTTTTATTTCTGACGTATGAAAAGCTAGACTTGTCATTGTAAAGTGTCTTCAACAAGTGTGTGGATTATGTTTTTGAACTGTTATGTAATGAAAGTAGTAGTAGGTTGTGCAAAGTGTGTAAAAGGCCCCATGAAACGAAACTGGCAGGACACAAGAGACATAACAGAGCTgatggagacaaaaaaaaatatttcatacTTTTTACACTGCGCTTGTATAACATTGTGTGTCAAATGTGTGTTATTACCACAGAAAAAGTCAGCGGACAGCCAGCGGCTGCAaggaagacacagacacacgtctTCATCCCGTCACTGCCTCTTCTTCGGTTACTGCTTGTGTTTGATCATGTCACTGTATGAACCAATTTgtactgttctttttttttttttctatcagaGTTGCATTTCAcgactgttttttgttttgtttcatggGGTCCTTGAAAGATTTcagttcttttcttttaatgaaTCTCTCTGTGAATAGATAAGACCTTTAGAGGGGTAACTCATCTATTTTATGTTACAGTTTGGTAGAAAGAGGTGTTTAGTTTTTCCTCAGACATGAAACTTTAAATTAGCTAAAGAAATGTGCTCGTTGGGTAGTCGATTCAACTGTTGTGTCTCCAGGAgctcattttaaacaaaataagtCATTCTAGGAGTTTTAGTAGGCGTGTCTCTCGTGATGTTAGAGTCCCCGCTGCTCCTCTCTTCTAACCTCGATTCAAACGTGTGAGGCTTTACATCCCATGTTGTGAGTAACTTAAGTTAAGGGACACCATCGGAACATTATTGTTTTAAAtcgctgtgtatttgtgtttacaAGATGACTCTGGGAAATGAAGGATATGAAGATGGTCAGACAGATGGAATAGTTACAGAGCAGGTTACACTGACATGAAACTAAGAACATGACGAATCCATTTCTGTGATGTTTTGCAGAGCCCTGATGTAGCCGAAATGCTATTTTTGAAAGTTTGGAAAAATGATGTAtgtcatggttgtgttgacaaaTGGGTTACACGTGTTTGCTGATTTTTGAAGTATCAGAAGCAAACTGTCAGTATTGGAATTCAATTTGTAGGGAAATGTCTTTCTGTCAAAGGGAAAGGTGCCTTAGGGGGAATTGcatattgataaaaaaaa

Function

symbol description
ttl Predicted to enable ATP binding activity and ligase activity. Predicted to act upstream of or within cellular protein modification process. Orthologous to human TTL (tubulin tyrosine ligase).

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K06047 TTL; tubulin---tyrosine ligase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039784346.1 True 4079 mRNA 0.44 7 25769647 25778043

Neighbor

gene id symbol gene type direction distance location
ikzf1 ikzf1,LOC102780616 coding upstream 11329 25740125 ~ 25758318 (+)
LOC120548498 NA coding upstream 34932 25722609 ~ 25734715 (+)
vwc2 vwc2 coding upstream 62405 25678195 ~ 25707242 (+)
dennd10 fam45a coding upstream 159129 25605466 ~ 25610518 (+)
fam204a fam204a,LOC102781047 coding upstream 338738 25413993 ~ 25430909 (+)
xpo1b xpo1,LOC104925896,LOC103353500,LOC102296990,LOC103154927,LOC101480205,LOC106952069,LOC103477318 coding downstream 82788 25860831 ~ 25888074 (+)
haao haao coding downstream 184312 25962355 ~ 25969516 (+)
hcar1-3 NA coding downstream 199414 25977457 ~ 25980437 (+)
trnai-uau_2 NA coding downstream 204702 25982745 ~ 25982838 (+)
plekhh2 plekhh2 coding downstream 636481 26414524 ~ 26476727 (+)
LOC120548233 NA non-coding upstream 185070 25501529 ~ 25584577 (+)
G196696 NA non-coding upstream 270367 25496668 ~ 25499280 (+)
G196690 NA non-coding upstream 335751 25427643 ~ 25433896 (+)
G196648 pdlim1 non-coding upstream 448778 25318266 ~ 25320869 (+)
G196595 mcmbp non-coding upstream 549733 25219547 ~ 25219914 (+)
G196782 NA non-coding downstream 1483 25779526 ~ 25794408 (+)
G196788 NA non-coding downstream 34172 25812215 ~ 25812441 (+)
G196841 pex13 non-coding downstream 126677 25904720 ~ 25907869 (+)
G196836 NA non-coding downstream 133718 25911761 ~ 25939959 (+)
G196898 NA non-coding downstream 212425 25990468 ~ 25992621 (+)
zgc:110045 LOC102779765,LOC102305383,LOC100704767,LOC101482925,LOC102197868 other upstream 94741 25594496 ~ 25674906 (+)
prdx3 prdx3 other upstream 148972 25613407 ~ 25620675 (+)
LOC120548229 rab11fip2 other upstream 274142 25481831 ~ 25495505 (+)
cacul1 cacul1,LOC103374658,LOC102794354 other upstream 625393 25139047 ~ 25144254 (+)
dact2 dact2,LOC103391347 other upstream 756398 25008474 ~ 25013249 (+)
LOC120548053 LOC103353497,LOC102790632,LOC102299158,LOC102194143,LOC101482614,LOC100706574 other downstream 39208 25817251 ~ 25826429 (+)
stpg4 LOC103353520,LOC101467386,LOC102793681,LOC102299197 other downstream 757241 26535284 ~ 26548760 (+)
G197053 NA other downstream 885116 26663159 ~ 26663785 (+)
tmem254 NA other downstream 947673 26725716 ~ 26735787 (+)
pwwp2b pwwp2b other downstream 1096172 26874215 ~ 26953805 (+)

Expression


Co-expression Network