LOC120548364 (sec23ip)


Basic Information

Item Value
gene id LOC120548364
gene name sec23ip
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 25222425 ~ 25232512 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039784600.1
CGAACTGCAGTCAAATGACCTGCGTGGTTTTAGCAGATCTACAAACCATGCGTGATTACGTCTTGTCGTATGTTGATCCACAGATATGCTTTGGAGATCAGTAAAGTCTGTTAGGACAGGAAAAGCTGTTTGGAGAACTGAGCGTTTACTGCCTGCCTGCGCCAATAGTGGCTACGTGTAATTCTAGGGTAAAATGGCAGATAGAAAGAATAATAATGTTCCCAACACCAGTGCAAATTTACTGTTCAGCGCCGCTCCGGAGTTTAACTTCAATCTGCCGTTCATGCCAGTGAGTCAGGCCACTGGTCCGGCGGTGTTGTCAGGAGATGATTCCACTGATGTTGGTGAAGAAGACAGCTTTCTAGGTCAGACCTCTGGGAATGGTGCAGCCCCCTCTACGTTCAACTACTTCTCCAGCCCCGTAACCAGCAGTGACCCGTTTGCAGCCATCGGCCAGTCGCCATGCCCGCCGCCGGCCCTGTCAGCAGCCCCGACAACAACCGGCCCGGTTTCTTTTCCCAGCAGTGCCAGCATGGCTCCACCACCCCATCCGGGCTCACAAATGAACCCTGCTCCTCCAGCGTTTGGCAGTGCAGTTTACCAAAGCCCTATGGGGCGTCACACTCCTCCCCCCACCACAATGACCTCACCGCCTCCTCAGATGCAGCCACAGAGTCATAACCCGTACCGACACACCCCCACCAGCAGCAGAGCCAGTCCGTATATTCCAGCTCCAGAGGTgctggcacaaacacacacacctcagcagAATCCATACCCTTTCAGCTCTCCGCCACAGACATTCCCGCTGTCAGGAGGACCCACATTCACAAAGCCTCCTCCCACACAGATTCAAGCGCCTCCACCTACAGCCACCACTGTTGGAGGAGTGATAGTTCCTGCTGGTCCCATGATGCCATACAACTACAACGTCTATGAGCCTGTTCAGCCTCACTGGTTCTACTGCAAGCAAGTGGAATCAAAGAGTGTCTGGCTTCCTTTCAGTATCATCGACTCCCTCCAGCTAGAGGAGACATATAACTCAGTTCAACCAGACCCAGAAAATGTGATCATACGGACAGATGGAGGGCGTTATGACGTGCAGCTCTATGACCGCATGCGGACTGCAGTGTACTGGGAAGAGGAGCCTACAGAGGTCCGGCGCTGCACTTGGTTCTACAAAGGGGATACGGATAGTCGCTTTATTCCTTACTCTGAGGAGTTCAGCGACAAGCTGGAGGCAGAATATAAGAAAGCCGTGTCTACCAACCAGTGGCATCGTAGACTAGAGTTCCCATCAGGAGAGACCATTGTCATGCACAATCCAAAGGTGATCGTGCAGTTTCAGGCCTCCTCCATGCCGGATGAGTGGGGCACAACTTCGGACGGGCAGACGAGGCCTAGAGTGGTGAAGAGAGGGATTGATGATGACCATGATGAAGTGCCGGATGGTGAGCTCCCACAGGTGGATCATCTGGTGTTCATGGTTCATGGAATCGGTCCTGTGTGTGACCTGAGGTTTAGGAGTATGGTTGAGTGTGTGGACGACTTCCGCAGTGTGTCACTGAAGCTGCTGCACAGTCACTTTAAGAAGTCGCTGGATGAGCAAACCATCAGCAGAGTGGAGTTCCTCCCTGTCCAGTGGCACACGGCTCTACATGGAGACGCCACAGGGGTGGACAGGAGGATCAAGAAGATTACGTTGCCCAGCACTGGACGTTTACGTCACTTTACAAATGAGACTTTGTTAGATGTGCTTTTCTACAACAGTCCCACTTACTGCCAGACCATCATGGACACAGTTGCCAGCGAGATTAACAGACTTTATGCCCTGTTCATGACGAGGAACCCCGACTACAGAGGAGGCACGTCGGTGGCCGGACACAGCTTAGGTTCCCTGATTCTCTTTGACCTGTTGTCAAATCAGAAGAATGGCTCTCCTCCAATGGCCATGCCCATCATACCCGCCGCTAATGGAAACACCAAACAGGTGGCAGGGAACACACAGGGAAATAATGCCACCCCCCCTCCAGCTGTGGAAGAGGAGCCTAAAGAAGATGGGGAGGAGTTTGAAGATCTTTCTGCCATGCTGGAACATCTGGGCTTGTCTGAGTACAAGAGTACCTTTGATGAGGAGAAGATTGACATTGAATCTTTTCTCATGTGCACAATCGAGGACCTGAAAGAGATGGGAATCCCTCTGGGCCCCCGGAAAAAAATCAGCAAGTTTGTCAAAGAGAGAGTGAATAAGCAGGCCGCACAACAGTCCGCCCAGGAGAAGAAAGCAGAGGTTTGTCAGGTTGCCGCGCCCCCACCGGCAGCTGCCGCTCCTCCTGATCCCTCTGTGAAGAAGCTCCCAGTGGGCAGCTCCGTCTCCATCCACGTCGACTACAATTACTTTGAAGTGGGCACTGGACAGGTGTCCGTGGTCTACCACGCTCTGGACTTTGAGCCGATGAACTTCTTCGCATTGGGCTCTCCAATCGGCATGTTCCTGACGGTCCGAGGACTGGAAAAGATTGACGAGGCGTACCAGCTGCCCACGTGCAAGCGATTCTTTAATATTTACCATCCGTTGGACCCAGTGGCATACAGGATCGAGCCCATGATAATACCAGACATGGACTTTAAGCCTGTCTTGATCCCGCATCACAAAGGGAGGAAGAGGCTTCATCTCGagcTGAAGGAGAGTCTTACCAGGATGGGCTCTGACCTGAAGCACGGGTTCATCAGCTCCCTGAGGAGCGCCTGGCAGACGCTCAACGATTTTGCTCGCGCTCACACCTCGTCTGCCCTGCTTCAGGCTGAGCTGGCCATGGTAGCCAATCAGATCGAAGAACAGGAGAAGCAAGAGCACGAGGAGCATAAGATGCCAGAGAGCCCTGAGCCACCAAAAGAGGAGGAGCCTCAGGTGAAGGTCGGGATGCTGAACGGAGGAAATCGCATCGACTACGTCCTGCAGGAGAAGCCCATCGAGAGTTTCAACGAGTACCTGTTTGCCCTCCAGAGTCATCTCTGCTACTGgCAATCTGAAGACACAGCTCTGCTTATTCTGAAAGAGATCTACAGGACCATGGGGATCCATCCAGAACATCTAGCACATTGATAAATGAAGTACCGGTGAAGAAAAGAAGTCTGAAACTTTCCCATTTGGTTTATTTTACATCAGTTTTCGTGAATTTTGATTTTTCTATTCATGTAGTTTATTGTATACAGATGAATAATACAATTGTATTATGCCATTTGTCTTAAATTAAGAAACATACAAATGAGCTTGTAGGTTCAAAGACACTTGACATGTTtgatattacatttttatagtaTAAATTATATAACTAAGTTTACTCTATGTATCATCAAATCAAATGCTAAGAGCAGAAATGACTATGACTTAGCAACAGTTAATGCAGCCTTCTGTAAGTTTTATTTAATAGccaaaatttcaaaataaatcatTTCCTTGCATGGGTTCTTTCTGTTTGAATTGTTGTAAATTGTTGAATGTAACACTTCTCTGGCAGGGCGAGGACACTGTAAGACTATCTACAAAAAGCTGTAATATTAGCAAagacattgattaaaaatgattacaGGATGA

Function

symbol description
sec23ip Predicted to enable phospholipase activity. Predicted to be active in COPII-coated ER to Golgi transport vesicle. Orthologous to human SEC23IP (SEC23 interacting protein).

NR:

description
PREDICTED: SEC23-interacting protein isoform X1

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039784600.1 True 3598 mRNA 0.50 18 25222425 25232512

Neighbor

gene id symbol gene type direction distance location
inpp5f inpp5f coding upstream 8921 25198539 ~ 25213504 (+)
bag3 bag3 coding upstream 24554 25191819 ~ 25197871 (+)
pkd2l1 pkd2l1,LOC104965266,LOC104921890,LOC103371634 coding upstream 44966 25171104 ~ 25177459 (+)
atoh7 atoh7 coding upstream 53375 25167925 ~ 25169050 (+)
mypn mypn coding upstream 57796 25144557 ~ 25164629 (+)
pcbd1 pcbd1,LOC106525612 coding downstream 63751 25296263 ~ 25299446 (+)
neurog3 NA coding downstream 83883 25316395 ~ 25318133 (+)
fam204a fam204a,LOC102781047 coding downstream 181481 25413993 ~ 25430909 (+)
dennd10 fam45a coding downstream 372954 25605466 ~ 25610518 (+)
vwc2 vwc2 coding downstream 445683 25678195 ~ 25707242 (+)
G196595 mcmbp non-coding upstream 2511 25219547 ~ 25219914 (+)
G196563 NA non-coding upstream 32746 25189430 ~ 25189679 (+)
G196558 NA non-coding upstream 40612 25178159 ~ 25181813 (+)
LOC120547601 NA non-coding upstream 103301 25111395 ~ 25119124 (+)
G196485 eif3l non-coding upstream 273393 24947838 ~ 24949032 (+)
G196648 pdlim1 non-coding downstream 85754 25318266 ~ 25320869 (+)
G196690 NA non-coding downstream 195131 25427643 ~ 25433896 (+)
G196696 NA non-coding downstream 264156 25496668 ~ 25499280 (+)
LOC120548233 NA non-coding downstream 269017 25501529 ~ 25584577 (+)
G196782 NA non-coding downstream 547014 25779526 ~ 25794408 (+)
cacul1 cacul1,LOC103374658,LOC102794354 other upstream 78171 25139047 ~ 25144254 (+)
dact2 dact2,LOC103391347 other upstream 209176 25008474 ~ 25013249 (+)
G196439 wdr11 other upstream 653258 24564550 ~ 24569167 (+)
LOC120548495 ate1 other upstream 795923 24367954 ~ 24426502 (+)
LOC120547848 LOC103369904,LOC106907288,LOC107081732 other upstream 854826 24357926 ~ 24367599 (+)
LOC120548229 rab11fip2 other downstream 249319 25481831 ~ 25495505 (+)
zgc:110045 LOC102779765,LOC102305383,LOC100704767,LOC101482925,LOC102197868 other downstream 361984 25594496 ~ 25674906 (+)
prdx3 prdx3 other downstream 380895 25613407 ~ 25620675 (+)
LOC120548053 LOC103353497,LOC102790632,LOC102299158,LOC102194143,LOC101482614,LOC100706574 other downstream 584739 25817251 ~ 25826429 (+)
stpg4 LOC103353520,LOC101467386,LOC102793681,LOC102299197 other downstream 1302772 26535284 ~ 26548760 (+)

Expression


Co-expression Network