spast (spast,LOC103374668)


Basic Information

Item Value
gene id spast
gene name spast,LOC103374668
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 22978152 ~ 22982603 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039784616.1
GAATcagagaagaagaagtagaACAAGAAGTACAAATAGAGTATAGCGGAAGCTAGCTGTAGAGATGTTTGTGTATTGATCTAATATGTCACATATACGGCAAAAAGATTGTTCAATAAACCAAAGACTTCGGATTGACCCAGTTATAAATGCGATTTGAAAGCTCCATTTGACCGTGTCCTCTTTCAAAAGTGGCTAACTCTGAGTTACAACTGAGAACAAGGAGACAGAGTAACGTGGAATTAGAGTCGGCCAAAAATAATGGCAAGTAAAAGCAAAGACAGCGGTGAAGTTATTAAAAACTACCATAAACAGGCGTTCGAGTATGTATCGAAGGCGTTACGGATCGACGAAGATGATACAGGAGATAAAGAGGAGGCTGTGCAGTGGTACAAGAAGGGTATTTCTGTGCTCGAAAGGGGTATTGAAGTAGAGATCACGGGGCAAGCAGGAGAGCAATATGACAGATCAAAGAGACTTCAAGATAAAATGGTCACCAATCTCACCATGGCAAAAGATCGGCTCGCTCTGTTAGAGGCAGCAATGGCAAATAAAAGGAGGAGTGATCCCCAGAAGACCTCAAATCATGCTCTTACACAACCAAAGCCTGTGCCTAAAAGCCAGCCTGCAGTGCGAGGTGTGTCCACTAACATCAGGACCTCCACTGTTAGAACCCCACCCAGACCCAGTGATCAAAAGTTGACGCCACGGGTCGCAAAAACTCAAAATGGAAAACCTGCAGCTGTGAAACTGCTCCCAAAGAGAGATATGAAAAACTTCAAGAATGTGGACAGCAAATTGGCCAATTtgattatgaatgaaattgttGACAGTGGAGCGTCTGTATTCTTTAAAGACATTGCGGGACAGGACCTGGCCAAGCAAGCACTCCAAGAGATTGTCATCCTCCCTGCCTTAAGACCAGAGctCTTTACTGGCCTGAGAACTCCAGCACGTGGTTTACTTTTATTTGGCCCACCTGGAAATGGGAAAACCATGCTGGCCAAAGCAGTCGCAGCGGAATCAAAAGCCACATTCTTTAACATCAGCGCTGCCAGTTTGACCTCTAAATATGTGGGAGAGGGCGAGAAGCTTGTGCGAGCACTGTTTGCAGTTGCCAGAGAATTGCAGCCCTCTGTGATCTTTATCGATGAAGTTGACAGCTTGCTCTGTgaaagaagggagggagaaCACGAGGCCTCTCGTCGATTAAAAACCGAGTTCCTCATTGAGTTTGATGGGGTGCAGTCAGGAGGGGATGACAGGGTGCTCGTAATGGGAGCGACCAACAGGCCTCAGGAGCTTGATGAAGCTGTACTAAGGCGTTTTGCAAAAAGGATTTATGTGGCATTGCCGGATGGGGAGACAAGAGTTACGCTGCTGAAAAACCTTTTGGGAAAGCATGGCAATCCACTGAGCAAAAATGAGCTTTCCCTTCTCGCAAAAAAGAGTGAAGGATATTCAGGAAGTGATCTCACGTCATTAGCCAAAGATGCTGCGCTCGGGCCTATCAGAGAGTTGGGACCAGATCAAGTCCGAAGTATGGCTGCTAGTGAGGTGCGTAACATCAAGATGAAAGACTTTGAGGATTCCCTGAAGCGCATTAAGCCCAGTGTTAGCCCAGCAACTCTTCATATGTATACCAAATGGAACAAAGATTTTGGGGACACAACAGCTATTTGAATTTTGAACTTTTcacttgttaaaaaaacaaaaacaaaaaaactgttaatTCCTCTGTTTTCATCTACTGGTACAAGACGTCATTAACATAAATGAACTTAAAAGCCTGGAACAAACCCTTTGTAGGGTGGTAAAGCTATAATGTATAAATATTATGAAATTAGAAAACATTTCCTGTTATATGGGAAGGCTTTGCTAGTAAGAGTTTCTTTACTGTGTTTTTACACTCCTTAAACACTGTCTTGCTATTTgaaattacattatttattcTTAAGAATGTCCTGTAAAATTACTATTGATCTTTCTCTTACCTCGAGGGCAGCAAGTTTCTGTAAATCCTGACAACCTCACTGATTTTGATCATTTTACACATCCATTATTTTCCTGATGCATTGACATGTTTATGGTATTGATCACCAAATGCTCTCTGTACTTGTACATATGCAAGAGTGATAATAATTGGGAGAATATCTGCCAAATTGGGTGAATTTGTattgcatttgtttgttttttcatttgcaCTTATAGTTTGTAGATACAAATACTTTTATTGTAGTTGAAAGTAGGAGACCTAATGAATTGTTGTGATGGCCAAGAAGAGTTATGATTTAATTGAGCAGAACTGTACTGGCATCCTACTTTCTTCATGcatcaataaatacatttattgaagTTTC
>XM_039784617.1
GAATcagagaagaagaagtagaACAAGAAGTACAAATAGAGTATAGCGGAAGCTAGCTGTAGAGATGTTTGTGTATTGATCTAATATGTCACATATACGGCAAAAAGATTGTTCAATAAACCAAAGACTTCGGATTGACCCAGTTATAAATGCGATTTGAAAGCTCCATTTGACCGTGTCCTCTTTCAAAAGTGGCTAACTCTGAGTTACAACTGAGAACAAGGAGACAGAGTAACGTGGAATTAGAGTCGGCCAAAAATAATGGCAAGTAAAAGCAAAGACAGCGGTGAAGTTATTAAAAACTACCATAAACAGGCGTTCGAGTATGTATCGAAGGCGTTACGGATCGACGAAGATGATACAGGAGATAAAGAGGAGGCTGTGCAGTGGTACAAGAAGGGTATTTCTGTGCTCGAAAGGGGTATTGAAGTAGAGATCACGGGGCAAGGAGAGCAATATGACAGATCAAAGAGACTTCAAGATAAAATGGTCACCAATCTCACCATGGCAAAAGATCGGCTCGCTCTGTTAGAGGCAGCAATGGCAAATAAAAGGAGGAGTGATCCCCAGAAGACCTCAAATCATGCTCTTACACAACCAAAGCCTGTGCCTAAAAGCCAGCCTGCAGTGCGAGGTGTGTCCACTAACATCAGGACCTCCACTGTTAGAACCCCACCCAGACCCAGTGATCAAAAGTTGACGCCACGGGTCGCAAAAACTCAAAATGGAAAACCTGCAGCTGTGAAACTGCTCCCAAAGAGAGATATGAAAAACTTCAAGAATGTGGACAGCAAATTGGCCAATTtgattatgaatgaaattgttGACAGTGGAGCGTCTGTATTCTTTAAAGACATTGCGGGACAGGACCTGGCCAAGCAAGCACTCCAAGAGATTGTCATCCTCCCTGCCTTAAGACCAGAGctCTTTACTGGCCTGAGAACTCCAGCACGTGGTTTACTTTTATTTGGCCCACCTGGAAATGGGAAAACCATGCTGGCCAAAGCAGTCGCAGCGGAATCAAAAGCCACATTCTTTAACATCAGCGCTGCCAGTTTGACCTCTAAATATGTGGGAGAGGGCGAGAAGCTTGTGCGAGCACTGTTTGCAGTTGCCAGAGAATTGCAGCCCTCTGTGATCTTTATCGATGAAGTTGACAGCTTGCTCTGTgaaagaagggagggagaaCACGAGGCCTCTCGTCGATTAAAAACCGAGTTCCTCATTGAGTTTGATGGGGTGCAGTCAGGAGGGGATGACAGGGTGCTCGTAATGGGAGCGACCAACAGGCCTCAGGAGCTTGATGAAGCTGTACTAAGGCGTTTTGCAAAAAGGATTTATGTGGCATTGCCGGATGGGGAGACAAGAGTTACGCTGCTGAAAAACCTTTTGGGAAAGCATGGCAATCCACTGAGCAAAAATGAGCTTTCCCTTCTCGCAAAAAAGAGTGAAGGATATTCAGGAAGTGATCTCACGTCATTAGCCAAAGATGCTGCGCTCGGGCCTATCAGAGAGTTGGGACCAGATCAAGTCCGAAGTATGGCTGCTAGTGAGGTGCGTAACATCAAGATGAAAGACTTTGAGGATTCCCTGAAGCGCATTAAGCCCAGTGTTAGCCCAGCAACTCTTCATATGTATACCAAATGGAACAAAGATTTTGGGGACACAACAGCTATTTGAATTTTGAACTTTTcacttgttaaaaaaacaaaaacaaaaaaactgttaatTCCTCTGTTTTCATCTACTGGTACAAGACGTCATTAACATAAATGAACTTAAAAGCCTGGAACAAACCCTTTGTAGGGTGGTAAAGCTATAATGTATAAATATTATGAAATTAGAAAACATTTCCTGTTATATGGGAAGGCTTTGCTAGTAAGAGTTTCTTTACTGTGTTTTTACACTCCTTAAACACTGTCTTGCTATTTgaaattacattatttattcTTAAGAATGTCCTGTAAAATTACTATTGATCTTTCTCTTACCTCGAGGGCAGCAAGTTTCTGTAAATCCTGACAACCTCACTGATTTTGATCATTTTACACATCCATTATTTTCCTGATGCATTGACATGTTTATGGTATTGATCACCAAATGCTCTCTGTACTTGTACATATGCAAGAGTGATAATAATTGGGAGAATATCTGCCAAATTGGGTGAATTTGTattgcatttgtttgttttttcatttgcaCTTATAGTTTGTAGATACAAATACTTTTATTGTAGTTGAAAGTAGGAGACCTAATGAATTGTTGTGATGGCCAAGAAGAGTTATGATTTAATTGAGCAGAACTGTACTGGCATCCTACTTTCTTCATGcatcaataaatacatttattgaagTTTC

Function

symbol description
spast Predicted to enable ATP hydrolysis activity; microtubule-severing ATPase activity; and tubulin binding activity. Acts upstream of or within several processes, including cytoplasmic microtubule organization; generation of neurons; and positive regulation of microtubule depolymerization. Predicted to be located in midbody and nuclear membrane. Predicted to be active in microtubule cytoskeleton and nucleus. Used to study hereditary spastic paraplegia. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 4. Orthologous to human SPAST (spastin).

NR:

description
spastin-like isoform X3

GO: NA

KEGG:

id description
K13254 SPAST; spastin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039784616.1 True 2360 mRNA 0.42 16 22978152 22982603
XM_039784617.1 False 2357 mRNA 0.42 16 22978152 22982603

Neighbor

gene id symbol gene type direction distance location
mkks mkks coding upstream 14198 22959309 ~ 22963954 (+)
jag1b jag1,LOC102209890 coding upstream 57840 22894831 ~ 22920312 (+)
flrt3 flrt3 coding upstream 414448 22553006 ~ 22563704 (+)
ephx5 ephx1,LOC103358491,LOC102206915 coding upstream 824826 22149948 ~ 22153326 (+)
mgme1 mgme1,LOC102788050 coding upstream 844632 22131121 ~ 22133520 (+)
LOC120547567 LOC104953149,LOC103387627,LOC103374175 coding downstream 19401 23002004 ~ 23009219 (+)
vit vit coding downstream 28786 23011389 ~ 23032132 (+)
gpatch11 gpatch11,LOC102790129,LOC102788696 coding downstream 98376 23080979 ~ 23083906 (+)
LOC120547580 NA coding downstream 102329 23084932 ~ 23094240 (+)
LOC120547579 NA coding downstream 117312 23099915 ~ 23110571 (+)
G195973 NA non-coding upstream 14022 22963967 ~ 22964130 (+)
G195968 NA non-coding upstream 53490 22922776 ~ 22924662 (+)
G195964 NA non-coding upstream 56253 22921175 ~ 22921899 (+)
G195965 NA non-coding upstream 57143 22854538 ~ 22921009 (+)
LOC120547852 NA non-coding upstream 211499 22723027 ~ 22766653 (+)
G196016 NA non-coding downstream 7081 22989684 ~ 22989890 (+)
G196017 NA non-coding downstream 7830 22990433 ~ 22990702 (+)
G196028 NA non-coding downstream 49849 23032452 ~ 23034791 (+)
G196036 NA non-coding downstream 153843 23136446 ~ 23144652 (+)
G196057 NA non-coding downstream 164209 23146812 ~ 23147635 (+)
tasp1 tasp1 other upstream 285548 22647914 ~ 22692604 (+)
kif16bb NA other upstream 793660 22155402 ~ 22184492 (+)
G195653 LOC102296834 other upstream 1463024 21514526 ~ 21515128 (+)
fbxo11a fbxo11,LOC104951339 other upstream 1645575 21318610 ~ 21332577 (+)
G195518 NA other upstream 2224343 20752773 ~ 20753809 (+)
disc1 disc1 other downstream 579680 23562283 ~ 23611337 (+)
klhdc3 klhdc3 other downstream 836311 23818914 ~ 23851605 (+)
LOC120547848 LOC103369904,LOC106907288,LOC107081732 other downstream 1375323 24357926 ~ 24367599 (+)
LOC120548495 ate1 other downstream 1385351 24367954 ~ 24426502 (+)
G196439 wdr11 other downstream 1581947 24564550 ~ 24569167 (+)

Expression


Co-expression Network