LOC120548489 (LOC101469311,LOC104948545,LOC103376395,LOC102786201,LOC102303134)


Basic Information

Item Value
gene id LOC120548489
gene name LOC101469311,LOC104948545,LOC103376395,LOC102786201,LOC102303134
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 24331872 ~ 24336022 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039784765.1
AGCAACGCAGCAAAGCCTTCAGTGCGGCTACAGGAAACTGTACCATATGAAAATACAGTCTCAAAAATGCACACAATATGGTGTGCCTTGTAATAAACAGTCGAAGAGAAATACTGAAGACAAGAAGATTgtcacagtaaacacacactcCTGTCAGTCAGTCTCCGCTTTGTTGCTTTGTACATCCCGCTGCATAATGAACTGCTTCTGCAGCTGCACTTCACAAAGAATCTGTCTGGCTGGTGTTGATTTGAGCTGTGCTGAATATGTTTGCGACTCTttctacaggagacattagaaAAGCAACAGGAGTGTCTAAAGAGGCAAAGGGAAGCCGTGAAATACAGACTGAAAAAACTGGCAGCACGGCAATCAGAAATTACAAAAAGGTCCACAGTGATAAAAGAGAACATCATACGGAAATATCTGGAGATCCGGGCCGTCCTTGATGAGGACCTGAGGATCACCCTGTCCCACCTGGAGATGGAGGAGCGGGCTGCAGTCTCTGCCCTGGATGGGCTGATGGAAAGGAACTGTTCTCTAATCCAGGAAATAGAGCAGGACCTGGCCAGACTCACTGTGGCAATGGACCAGACCGACACAGACCCTGATACAATGTCTGTCTTTTCATACCCTGAGCAGCAAGACACGGAGACAGTGGACAGAGTGATGGATCTGCTAAACAGCTCAGACCCGAGCAGTGTGAGGCTGGACGAAGCTAAAGCCGAGCAGATCCTCAGCCTCGCCAACAACATGCTCCTGCTGATCAGCTCACAGACGCCTATAATCAAGAGCTTCACCAAGAGTTATTCCAGCGAGGTGTGTTTGGATCCGGAGACGGCCCACCCAAAGCTGATCATCTCCCCCCGTGGGGACAGCGCCATCTACACAGACACCTGGCAGCAACTTCCTGACCTCCCTGGACGCTTTGACACCACCCTCAATGTCATCAGCTTGCAAGGATTCAGCTTTGGCCACCATTACTGGGAGATTGATGTGACTGGGAAGACTTACTGGGAGCTGGGCGTCACCTATCCCAACATTCCCCGCAAGGGCACCACTGAGGACTGCTGGCTGGGCCGGGGGGACGAGTCCTGGTGTGTGGAGTTCTTTGATGGGGAGTATACAGCCTGGCACGGAGGGGTGCCCCATCAGCTGCCTTTCACCAAACGCTTCTGTCGGATTGGTGTTTTGTGTAGTTTCCCTGCAGGGTTGGTGACGTTTCTTGAGGCAGAGAACATGACGCCGCTGTTCTCCTTCTGTGCAGGAACCTTCTCAGACTGCCTCCACCTGGCTCTGTGTCCTGGCCATGACCACAATGGCACCAATGCGCAGCCTATTGTGATCTGTAATGCTCCATCTCCTACCAGTGATCTCTGATTAGCTTTGAGGCTCCACAGAAAAGCTTTTAGTAATTTGTTGCTAAGGCCCCACTTTTTAATAATGCACCAATTATAAAAGTTTATAAGCAAGTAATGgcttcatttatatatatataaaaaaattatgtcTTTGGACTAAACATTTAATGAAGAATATGTcactaattaaataaaacaatgaatCTGTTACAGATGCTTTCGGTGTCATAATAGGCTACCAGATTTTTGAGAACATTAAACATTCACAGTATGAACAGTAATACTTGGTTGCTGGACTAAACTGGAAGTGTAACCTATTTGGATTGCCGTGATTGATACATTCGTGGTTTAATTAAAGATAATCACACTTCTGTATTTGAATTCTAGAAGAaccaaaatataatatatataaatatagatatatacgcttttgcatcattttgtattcattctattttatttgtatttaatttaGCCAACAAGATAATATATtatggatttttgtttttataattgtTGGTATAATTATAGAAAATGTTGTCTGTTAGCACTCAACTCATCTCATTGTTTGTGATTAGGGATCAGATTTCAATTCAGACATCCCACTGCATCCCAATACAATTTAATTTCCCATGTGTGGACTAGGTTCAGCAGCACTAAATTACGACCTAAGGTCAAGGATCTGcattacaaacattacacaCGGTGACGCCACATTCCTCTGCTTATGTCAGTGAATTTACTACTTTGAATTTACTCTCAAATGAAATGTGTTATGTAactaaaattgccttgccttgaatGCAAATCACGCAACACTTCGTGCAACAATACAAAGAACAGCTTTCACCGAGTACGACTCAGTTCCCTTCGTTCGTACCAAGGAGCATCAGATCGCTCGTTAAACGAAACATCACTACCTCATGGGGGATTCTTCCTCTGGGGAGCATGAATGTATGCACACATTTTGGTGCAATTCCATCcagtagatgttgagatatttcacataATAAGGGaaactttgacctgctggtggctCTATAGAAGAAAAGACAGGAAATCACTGAAGACATATAATTCATCCTCTGGACACCGTGGATATCTGTACCACATGACAATTCAGTTTTTGAGATATTTCTCTAAAAGCCCAAAACGTCAAATTCATAGTAGTACTCATGACAATCATTGTCATTTttggagatatttcagtctggaccaaagtggtggacagaTCGACATACCAACAGCCCAACAGGCTGAAAATCATCCACAGTACTAATGCTTTATTGATGAGTTATCCAGTTGTGgaatatctgtctgtctttctattTGGTAAAAATGTGGTTATAAGTCTTGGCAATCCATTTTATCATGGGTTTCtcttctttttaataatctaccCAGTGTAAAGTTGGaaatggtaataagctattaaTAAATGGAGTTTGGGCCAAATGGTCTAACAGTCCTCATGAATTAGAGATTTTGCTGAAGACACAAAGCAAATGTTGGGGCATAAACATAATCCATAACACATCACTAAATTCTTTATTAACCATTAATAAAGCTGTAAGTTACAACCAATAAACACATTATAAAGGGTGCATTATTAAAAGAATGGTAGCCTGCTTATACTGATAATAAATTATAGTAGGAAGATAGTTCCTCACAAGGAGAACACTACATTTCTCACAGTGCCTGTATTGCACTTTCAGATGAATGTACAATATATTAGAAGTGTGGCCCATCTCTTCATTAAGATCATTATACTGAGAAAAGCGGACCATGAAATTTTAATGCACTTTGAGTGTACATATTCTTTCTGTATGACAAAGTCTTGTTTAAgagtttcatttttatttggaaGTCATAGAAGTTACtgatacataaatatataagaaGTAGTATTACATTTTACTTAGTAATTTATCCTTAAATGCACCGAGTGTATTTGGATCCAAAGTCTGTGTTCAAACAAACAATTGGCTTTGCAAATATGCTCTCTGAGCCTTTGTGTTGCATTTGAGTGCATTCTTATCCTATTCAAACTAAATTCATTCTAATGAATTTCAACATGAAACAATCTTTCAAGGCTGGTAGAGATGATAATCTTGATGTTGCACCATTTATTTGTCCTGTTTAGGTGTTCCCTAACATGAGCAATGTTCTGCCTATTATAACTAAGAAAAATAAGTATCCAAGAGCACagtaaaaaatcaataaaagtgGGCACCTGGTTATATCACCtagtagagcgtgcgcccatatatagaggtttactcctcgacgtagcggccgcgggttcgactccgacctgcatgtcattccccctctctctcccctttcaagtctatg

Function

NR:

description
E3 ubiquitin-protein ligase TRIM39-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039784765.1 True 3716 mRNA 0.41 5 24331872 24336022

Neighbor

gene id symbol gene type direction distance location
ablim1a ablim1,LOC102784938,LOC102304155 coding upstream 2631 24284646 ~ 24329241 (+)
srfb srf coding upstream 63848 24248198 ~ 24268024 (+)
ptk7b ptk7 coding upstream 86031 24211972 ~ 24245841 (+)
klc1b klc4,LOC102306811 coding upstream 171269 24130784 ~ 24160603 (+)
zmp:0000000755 LOC100695905,LOC101469954,LOC102307746,LOC103371009 coding upstream 209797 24062755 ~ 24122075 (+)
habp2 NA coding downstream 100 24336122 ~ 24340184 (+)
fgfr2 fgfr2,LOC102787384 coding downstream 118846 24454868 ~ 24494403 (+)
LOC120548496 cdh23,LOC107989583 coding downstream 406904 24742926 ~ 24840747 (+)
cdh23 cdh23 coding downstream 531238 24867260 ~ 24944419 (+)
smoc2 smoc2 coding downstream 618690 24954712 ~ 24976820 (+)
G196332 NA non-coding upstream 61820 24268273 ~ 24270052 (+)
G196337 NA non-coding upstream 167241 24164200 ~ 24164631 (+)
G196336 NA non-coding upstream 169657 24160613 ~ 24162215 (+)
G196328 NA non-coding upstream 207723 24051189 ~ 24124149 (+)
LOC120548378 NA non-coding upstream 457709 23870544 ~ 23874163 (+)
G196454 NA non-coding downstream 303392 24639414 ~ 24639857 (+)
G196457 NA non-coding downstream 304677 24640699 ~ 24642057 (+)
G196475 NA non-coding downstream 507421 24843443 ~ 24843852 (+)
G196476 NA non-coding downstream 511092 24847114 ~ 24847690 (+)
G196481 NA non-coding downstream 537780 24873802 ~ 24913468 (+)
klhdc3 klhdc3 other upstream 480267 23818914 ~ 23851605 (+)
disc1 disc1 other upstream 720535 23562283 ~ 23611337 (+)
tasp1 tasp1 other upstream 1639268 22647914 ~ 22692604 (+)
kif16bb NA other upstream 2147380 22155402 ~ 22184492 (+)
G195653 LOC102296834 other upstream 2816744 21514526 ~ 21515128 (+)
LOC120547848 LOC103369904,LOC106907288,LOC107081732 other downstream 21904 24357926 ~ 24367599 (+)
LOC120548495 ate1 other downstream 31932 24367954 ~ 24426502 (+)
G196439 wdr11 other downstream 228528 24564550 ~ 24569167 (+)
dact2 dact2,LOC103391347 other downstream 672452 25008474 ~ 25013249 (+)
cacul1 cacul1,LOC103374658,LOC102794354 other downstream 803025 25139047 ~ 25144254 (+)

Expression


Co-expression Network