vent



Basic Information


Item Value
gene id vent
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 27891450 ~ 27900204 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence


>XM_039784781.1
ATGGAGGGGTTTGCAAAAGGATCAAGAAGCCAATACTCCCCGACGTCGCCAAACAACAGTTGCGGTTACACGTCGGGGTCTGAGAGCGAGGTGGGGGACGACAGCGAGGGGGAAGCCGGCACCCAGCAGCGGAGGATGAGGACCAAGTTCACCTCGGAGCAAATCAGCAAACTGGAGAAGGCCTTCCGCAAGCACAGATACCTGGGAGCTATGCAGAGGAGGAAGACTGCCGAGAAGCTGAACCTCTCCGAAACTCAGGTGAAAACATGGTTCCAAAACAGGAGGATGAAGCTGAAACGGGAGGTCCAGGACCTGCGTCCTGAGTTCCTGTCTGTCCCGGCCGCTCTGCTGTTTCAGCACCCCGCCCTGAGTGGACAGCTCCCCGCCCTGAGTGGACAGCTCCCCGCCGGCAGCGGCTTCTTCCCGCAGCTGCAGCTGCCGCGGCGGCCACCCCACACTACAGCCCTGCACCAgcgccagcagcagcaccaccaagtagaagtagaaagtggcctGAAAAAGCCAGACACACCGGAGCCAAGgctggatgatgatgatgatgaggatgaggatgatcATGATGGGATTGTTCAGGTTCAGTGA

Function


NR:

description
unnamed protein product

GO:

id name namespace
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0042661 regulation of mesodermal cell fate specification biological_process

KEGG:

id description
K24877 VENTX; homeobox protein VENTX

RNA


RNA id representative length rna type GC content exon number start site end site
XM_039784781.1 True 603 mRNA 0.59 4 27891450 27900204

Neighbor


gene id symbol gene type direction distance location
vox NA coding upstream 3841 27886243 ~ 27887609 (+)
LOC120548504 kndc1 coding upstream 12882 27808304 ~ 27878568 (+)
valopa valop,LOC104938804,LOC106940109,LOC107093123 coding upstream 684784 27176968 ~ 27206666 (+)
LOC120547537 NA coding upstream 1017782 26865625 ~ 26873668 (+)
LOC120547700 plac9 coding upstream 1124112 26758333 ~ 26767338 (+)
blnk NA coding downstream 331591 28231795 ~ 28275999 (+)
btaf1 btaf1 coding downstream 420543 28320747 ~ 28350987 (+)
march5 march5 coding downstream 512062 28412266 ~ 28447794 (+)
LOC120547570 kmo coding downstream 587319 28487523 ~ 28508440 (+)
LOC120547955 rmdn2 coding downstream 735124 28635328 ~ 28686068 (+)
G197158 NA non-coding upstream 521519 27369236 ~ 27369931 (+)
G197146 NA non-coding upstream 590082 27300110 ~ 27301368 (+)
G197143 NA non-coding upstream 591456 27299168 ~ 27299994 (+)
G197137 NA non-coding upstream 625942 27265279 ~ 27265508 (+)
G197089 NA non-coding upstream 748664 27142571 ~ 27142786 (+)
G197237 NA non-coding downstream 104373 28004577 ~ 28006159 (+)
G197270 NA non-coding downstream 350554 28250758 ~ 28251552 (+)
LOC120548567 NA non-coding downstream 509266 28409470 ~ 28411483 (+)
G197287 NA non-coding downstream 549376 28449580 ~ 28452009 (+)
G197299 ide,LOC104941703,LOC102291663 non-coding downstream 564942 28465146 ~ 28474917 (+)
LOC120548047 adgra1,LOC103360772 other upstream 110409 27554928 ~ 27781041 (+)
LOC120548261 LOC102312438,LOC102207415,LOC101470427 other upstream 379858 27451950 ~ 27511592 (+)
LOC120547882 inpp5a other upstream 782310 26926418 ~ 27109140 (+)
pwwp2b pwwp2b other upstream 937645 26874215 ~ 26953805 (+)
tmem254 NA other upstream 1155663 26725716 ~ 26735787 (+)
ccnj ccnj,LOC102785723 other downstream 394001 28294205 ~ 28302333 (+)
LOC120548242 ccdc85a,LOC104955469,LOC102783086,LOC102310250,LOC102209339,LOC100696856 other downstream 1212484 29112688 ~ 29177494 (+)
G197531 NA other downstream 1448221 29348425 ~ 29349928 (+)
LOC120547718 LOC102789565,LOC100690068,LOC101471749,LOC103357097 other downstream 1618737 29518941 ~ 29619016 (+)
LOC120547658 NA other downstream 2253307 30153511 ~ 30201820 (+)

Expression



Co-expression Network