si:dkey-187a12.4 (LOC104933667,LOC104950525)


Basic Information

Item Value
gene id si:dkey-187a12.4
gene name LOC104933667,LOC104950525
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 28790784 ~ 28801376 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039784801.1
ACGTTTGTGCAACGTGATATCGTTCGCTGGTTTTTATCTCAACTTCCGCTTGTTCTCTGTACTGATAGAGCAAAGAAACGTTACCAAAACGTTTTATAAAGGCTTTCGGAAACGTTTCATCGGCTCACGGTTTGGAAAAACTTAAATGGAGCACGGTAACGGGGATAACCCCGACTGGCCGATGCAACGACGAGTGGAAGGTTTTGTAAACAAACATATGGCAGACATTGCTCGAGAAGCCCTCCAGCAGAGGCTGACTGCTGTGTCAGATGAGATGCACAATCTGGCCGAACGTGTTTCCAGACGATCAGGGGAAGAGTTCAAAGACGACCCGCGGCAAGGGGACGTGAGCTTCGGTGTACAGCCGCCACTCTGCTCCGCCTGTAGCTCCGGAGCCGCAGACAAGTTACTTTCTGCCCCATCCACAGAGATGGCTGCTCAGCGGAAGATCATCGGCCTACTGGTGGAGATCCAAGAGGAGCAGCAGCGACAGTGGGCAGTGCTGAGGGATCTTCAGGCCCGCCTGCAGGGTCCGGCCGGCTACGAGGAAGAGGATGTTGAGGCCCTGGACATGGATCTCCCCCTGAGGACCCTGGAGCAGCTGGATGACATGGAGAGGCAGCTGGATGACGCAGGAATACAGAAGAGGATGGTGTCTTACCTGTCCCGGATGGGCGGAGCTACGGTTGAAGATGCAGTGAGACGCCTTATGCAGGCTGTGCTTTCATTCGCTGTGGGTTCTGAGCTTAACTGGGTGGGCCGCGGACAGAAGAGAAGCTTCAGGAACACTCGCCTCCAAGGGGTCCTCTTCTGCGCCCTGAAACGAACACCGGTGGGTAAGGAGGCCACACATCACCAGTACGCTGACGTGGTGAAGAAATGGCTGCGGTTTGCTCCGTTCAGACAGGGAGGGACCGGCCGTCGCTGCTACAAAGCTCCTGTGGAGTTTCCAGATTCCGAGGAAACTGACTGAGTTTTAACCACACTGACATTCATGGTATCCCAAGATACCTAAACATGAGGGTTTCCATTCTGAGACAAGATATCcacatgtaaacattttaaaaaaaacacacatgcatgaaaATATTTCTGTTATGATAGCAATATAATTATGTCTTAAGACACCTGCACACTGTACACTTTTGTATttttcctcttcctgctaaaaGTGCAAATGTCCTTTTTAAAGACGCGAATGAGAAgacattttcttcatttcagtGAGCTGTGTTAGAGAAGAACGATGGCAATGATACGTCTTACAGAACTtcactaaaaaaacatttgaatgaatctttctttcttttttatatcgGTCAGTGCACATCAGTCTCAGTTGTTTATAAATGGATGTATAGTGTCTTAGGATGAAACCATTCactgtatgatttttttttttcttcttctgtatgtTAAAGCATTGTTTCACCCCTTGTACACCaacagtattttctcctttcttAATGCCTAATGCATTGTTGTAACTCTTCTGAGGGTATGTGAGCTTTGTACA
>XM_039784802.1
gtgACGTTTGTGCAACGTGATATCGTTCGCTGGTTTTTATCTCAACTTCCGCTTGTTCTCTGTACTGATAGAGCAAAGAAACGTTACCAAAACGTTTTATAAAGGCTTTCGGAAACGTTTCATCGGCTCACGGTTTGGAAAAACTTAAATGGAGCACGGTAACGGGGATAACCCCGACTGGCCGATGCAACGACGAGTGGAAGGTTTTGTAAACAAACATATGGCAGACATTGCTCGAGAAGCCCTCCAGCAGAGGCTGACTGCTGTGTCAGATGAGATGCACAATCTGGCCGAACGTGTTTCCAGACGATCAGGGGAAGAGTTCAAAGACGACCCGCGGCAAGGGGACGTGAGCTTCGGTGTACAGCCGCCACTCTGCTCCGCCTGTAGCTCCGGAGCCGCAGACAAGTTACTTTCTGCCCCATCCACAGAGATGGCTGCTCAGCGGAAGATCATCGGCCTACTGGTGGAGATCCAAGAGGAGCAGCAGCGACAGTGGGCAGTGCTGAGGGATCTTCAGGCCCGCCTGCAGGGTCCGGCCGGCTACGAGGAAGAGGATGTTGAGGCCCTGGACATGGATCTCCCCCTGAGGACCCTGGAGCAGCTGGATGACATGGAGAGGCAGCTGGATGACGCAGGAATACAGAAGAGGATGGTGTCTTACCTGTCCCGGATGGGCGGAGCTACGGTTGAAGATGCAGTGAGACGCCTTATGCAGGCTGTGCTTTCATTCGCTGTGGGTTCTGAGCTTAACTGGGTGGGCCGCGGACAGAAGAGAAGCTTCAGGAACACTCGCCTCCAAGGGGTCCTCTTCTagtcTGATGCAGTCACTCCACATaatggcgctgacacaccaaccctaTAATCGgctgtcggacagtctggcgagg

Function

NR:

description
uncharacterized protein LOC109888787

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039784801.1 True 1516 mRNA 0.48 4 28790787 28801376
XM_039784802.1 False 890 mRNA 0.55 4 28790784 28797636

Neighbor

gene id symbol gene type direction distance location
LOC120548038 tuba1c,LOC108255233,LOC103148207,LOC108247626,LOC106920718,LOC101079871,LOC101066234 coding upstream 879 28787046 ~ 28789905 (+)
LOC120547521 nanp coding upstream 20705 28764397 ~ 28770079 (+)
LOC120547955 rmdn2 coding upstream 104716 28635328 ~ 28686068 (+)
LOC120547570 kmo coding upstream 282344 28487523 ~ 28508440 (+)
march5 march5 coding upstream 342990 28412266 ~ 28447794 (+)
LOC120547961 LOC103372209,LOC104933668 coding downstream 16457 28817833 ~ 28854223 (+)
LOC120547808 NA coding downstream 755887 29557263 ~ 29558335 (+)
LOC120547721 LOC103357097 coding downstream 827355 29628731 ~ 29632761 (+)
LOC120548236 LOC103357099,LOC103387711 coding downstream 845347 29646723 ~ 29655051 (+)
pcca pcca coding downstream 858036 29659412 ~ 29698143 (+)
G197409 NA non-coding upstream 83579 28706883 ~ 28707205 (+)
G197378 NA non-coding upstream 280307 28508978 ~ 28510477 (+)
G197299 ide,LOC104941703,LOC102291663 non-coding upstream 315867 28465146 ~ 28474917 (+)
G197287 NA non-coding upstream 338775 28449580 ~ 28452009 (+)
LOC120548567 NA non-coding upstream 379301 28409470 ~ 28411483 (+)
G197439 NA non-coding downstream 65926 28867302 ~ 28867503 (+)
G197441 NA non-coding downstream 72802 28874178 ~ 28874530 (+)
G197446 LOC100696947,LOC101488034,LOC102786940,LOC102291530 non-coding downstream 88092 28889468 ~ 28891827 (+)
G197514 NA non-coding downstream 403892 29205268 ~ 29205577 (+)
G197525 NA non-coding downstream 492142 29293518 ~ 29294176 (+)
ccnj ccnj,LOC102785723 other upstream 488451 28294205 ~ 28302333 (+)
LOC120548047 adgra1,LOC103360772 other upstream 1009743 27554928 ~ 27781041 (+)
LOC120548261 LOC102312438,LOC102207415,LOC101470427 other upstream 1279192 27451950 ~ 27511592 (+)
LOC120547882 inpp5a other upstream 1681644 26926418 ~ 27109140 (+)
pwwp2b pwwp2b other upstream 1836979 26874215 ~ 26953805 (+)
LOC120548242 ccdc85a,LOC104955469,LOC102783086,LOC102310250,LOC102209339,LOC100696856 other downstream 311312 29112688 ~ 29177494 (+)
G197531 NA other downstream 547049 29348425 ~ 29349928 (+)
LOC120547718 LOC102789565,LOC100690068,LOC101471749,LOC103357097 other downstream 717565 29518941 ~ 29619016 (+)
LOC120547658 NA other downstream 1352135 30153511 ~ 30201820 (+)
G197999 NA other downstream 2432988 31234364 ~ 31234723 (+)

Expression


Co-expression Network