march5 (march5)


Basic Information

Item Value
gene id march5
gene name march5
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 28412266 ~ 28447794 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039784912.1
AAGCTATTTACGTTACCTTCGAGACGGCCCAGTTAATGGAGTCACGCGGCCACGCCAATACAACAAATGAGACCGTAGCAGATGTAAAGGggattttttttacttgaaataGATCATCGGTCACAGATAGATGCTGTCTATATTACAATGACCGCAAAGGAATAGTTTTAAGCTAAATACTTGGCTCGTTTGCAGCTGTCTTACCGTATCAACACAAGGGcctatgtagctagctagctagttaacgctCATTCCTCAGCTGCAGTAAATTAACAGGCgtgccattttattttattttatctataACGCAACTTATCTGCTTTGCCTAAAAGACAGCATTgggttttttgttgctttttcacgACAATGGCGGAACAGGGTGCAGCGGCCATGCAGAATTTGGACAGGAGCTGCTGGGTATGCTTTGCCACAGATGAGGACGACCGCACAGCAGAGTGGGTGCGTCCTTGTCGCTGCCGGGGCTCGACCAAATGGGTTCACCAGGCCTGTCTGCAGCGCTGGGTGGACGAGAAGCAACGAGGCAACAGCACCGCACGTGTGGCCTGCCCACAGTGCAATGCAGAATACCTCATCGTCTTTCCCAAACTGGGCCCCGTGGTTTACGTGCTGGACCTGGCCGACCGGCTCATCTCTAAGGCCGGCCCCTTCGCCGCCGCCGGCATCATGGTGGGCTCCATCTACTGGACTGCAGTCACCTACGGAGCAGTCACTGTCATGCAGGTGGTGGGCCATAAGGAGGGCCTGGACGTTATGGAGCGGGCCGACCCTCTGTTCCTGCTCATCGGCCTGCCCACCATCCCCGTCATGCTGATCCTCGGCAAGATGATCCGCTGGGAGGACTACGTCCTGCgtctgtggaggaagtactCCAACAAGCTGCAGATCCTCAACAGCATCTTCCCAAGGATCGGCTGCCCGGTTCCCCGCATCCCGGCAGAGGCCAGCCCCTTGGCAGACCACGTGTCGGCCACGCGGATCCTGTGCGGCGCCCTGGTCTTCCCCACCATCGCCACCATCGTGGGGAAGCTCATGTTCAGCAGCGTCAACTCCAACCTGCAGAGGACCATCCTGGGAGGCATCGCCTTTGTGGCCATCAAGGGGGCGTTTAAGGTGTACTTCAAACAGCAGCAGTACCTGAGGCAAGCCCACCGCAAGATCCTGGACTTCCCTGAGCAGGAGGAAGCCTGAGGAGGCTGCGCCGTCCGGAGGGGGGGGACAGCCGgaccccacacacagacacgcggGACTCTGAGCAGGAAGTGTTGGTGAAAACGGACTCGGGGGTCAGGGTCGGCCTCCCTTACGCCTCGACCCCTTCTGGAGCGATTCATCGCACGGCCGCTGACATTCACGCAAGGATCCCCACCGCCGCCACTACACGTTTTTAAACTTTTGACGCTTTTGGTAAAGTGAAGACGGATAACACTCGTCGACGCCGACTGGAGCATGTTTGCAGTCGGTGTGCGGTTATAGACACACACGTCGGAAAACCAAGGAGTCGTGCTTGTGTGACTCTCGGGTGGATTTGCTTCAACCACCACATAACTAACACTTATTGTAAACgtactgtattttaaagattaaaaagGCGGGCCATGTGTAATTTAGAaagttttataataataaatggtTGTTTTATAATTATTTCAAAGATTTGAAAAGTCCCCCTTTTGCCTAAGTTTGGGGTTTGTATTAAATGCAACTGTTCAGTGTGGTGTAGAATGTATTAACAATTAAACAATAATTAATGTATAAATCCTGATGCAGTAGCTACATTAACCCCAACCAGGAAGCATCAAGAGAGAAACGACCCGCTGAccacatgggggggggggggtttgagaCCCTGCAACTATGTGAGGgctctttgtttttgttcacagGCCTCGGCAGCGTTTGTCGTCTGTAGCTTCATCTCCGCTCAACAAAACGCTCGTCTGTCGTGTCCCAAAGCTACAGCACGTGGTCGAGCCTGTCGCCGCGAGACATTTACAGCAGACGGGTGGACGGATAATGGACGCTTTTGGTCCTCGGAGCTTTTTTTTGCTGTGACGGGATGTTCTACCGGGAAATCATCTGAAAAGCTTGGGGAGACTCGCTCACCTGATGGTCCAGCACTTTGCTCTGGGAAGAtgtgaaactttattttttatttgagctACAAATCCACTTTATTCCCCCAAACATGTGATGATAGGACTGTTGTGTTGCCCGAGTGCAAACTGCACCTCAGGTCAGCCTGCGGTTCTGAGGTAATGGACCTTTTCtcatggcagacatgttgacatttcgtagtaggaaaagcaccggtgtattcaaaaccattactgatggctgcattccacttaggagaggtcctggtattgtgcatgctgagtCACTggaatagcttactgggacacttgatggaactgagccatcgttaaggttatcaatgtcagctgtgcttttcctactatgacaagtccaaatgtctgctgtgaaaaaggtccattaccATGCAGATATAAGGGAAGCTTGGACACTGCTCATTGTGGGTGACATTTCT
>XM_039784913.1
gggaggagagaggaaatgagGAGCTGCTGGGTATGCTTTGCCACAGATGAGGACGACCGCACAGCAGAGTGGGTGCGTCCTTGTCGCTGCCGGGGCTCGACCAAATGGGTTCACCAGGCCTGTCTGCAGCGCTGGGTGGACGAGAAGCAACGAGGCAACAGCACCGCACGTGTGGCCTGCCCACAGTGCAATGCAGAATACCTCATCGTCTTTCCCAAACTGGGCCCCGTGGTTTACGTGCTGGACCTGGCCGACCGGCTCATCTCTAAGGCCGGCCCCTTCGCCGCCGCCGGCATCATGGTGGGCTCCATCTACTGGACTGCAGTCACCTACGGAGCAGTCACTGTCATGCAGGTGGTGGGCCATAAGGAGGGCCTGGACGTTATGGAGCGGGCCGACCCTCTGTTCCTGCTCATCGGCCTGCCCACCATCCCCGTCATGCTGATCCTCGGCAAGATGATCCGCTGGGAGGACTACGTCCTGCgtctgtggaggaagtactCCAACAAGCTGCAGATCCTCAACAGCATCTTCCCAAGGATCGGCTGCCCGGTTCCCCGCATCCCGGCAGAGGCCAGCCCCTTGGCAGACCACGTGTCGGCCACGCGGATCCTGTGCGGCGCCCTGGTCTTCCCCACCATCGCCACCATCGTGGGGAAGCTCATGTTCAGCAGCGTCAACTCCAACCTGCAGAGGACCATCCTGGGAGGCATCGCCTTTGTGGCCATCAAGGGGGCGTTTAAGGTGTACTTCAAACAGCAGCAGTACCTGAGGCAAGCCCACCGCAAGATCCTGGACTTCCCTGAGCAGGAGGAAGCCTGAGGAGGCTGCGCCGTCCGGAGGGGGGGGACAGCCGgaccccacacacagacacgcggGACTCTGAGCAGGAAGTGTTGGTGAAAACGGACTCGGGGGTCAGGGTCGGCCTCCCTTACGCCTCGACCCCTTCTGGAGCGATTCATCGCACGGCCGCTGACATTCACGCAAGGATCCCCACCGCCGCCACTACACGTTTTTAAACTTTTGACGCTTTTGGTAAAGTGAAGACGGATAACACTCGTCGACGCCGACTGGAGCATGTTTGCAGTCGGTGTGCGGTTATAGACACACACGTCGGAAAACCAAGGAGTCGTGCTTGTGTGACTCTCGGGTGGATTTGCTTCAACCACCACATAACTAACACTTATTGTAAACgtactgtattttaaagattaaaaagGCGGGCCATGTGTAATTTAGAaagttttataataataaatggtTGTTTTATAATTATTTCAAAGATTTGAAAAGTCCCCCTTTTGCCTAAGTTTGGGGTTTGTATTAAATGCAACTGTTCAGTGTGGTGTAGAATGTATTAACAATTAAACAATAATTAATGTATAAATCCTGATGCAGTAGCTACATTAACCCCAACCAGGAAGCATCAAGAGAGAAACGACCCGCTGAccacatgggggggggggggtttgagaCCCTGCAACTATGTGAGGgctctttgtttttgttcacagGCCTCGGCAGCGTTTGTCGTCTGTAGCTTCATCTCCGCTCAACAAAACGCTCGTCTGTCGTGTCCCAAAGCTACAGCACGTGGTCGAGCCTGTCGCCGCGAGACATTTACAGCAGACGGGTGGACGGATAATGGACGCTTTTGGTCCTCGGAGCTTTTTTTTGCTGTGACGGGATGTTCTACCGGGAAATCATCTGAAAAGCTTGGGGAGACTCGCTCACCTGATGGTCCAGCACTTTGCTCTGGGAAGAtgtgaaactttattttttatttgagctACAAATCCACTTTATTCCCCCAAACATGTGATGATAGGACTGTTGTGTTGCCCGAGTGCAAACTGCACCTCAGGTCAGCCTGCGGTTCTGAGGTAATGGACCTTTTCtcatggcagacatgttgacatttcgtagtaggaaaagcaccggtgtattcaaaaccattactgatggctgcattccacttaggagaggtcctggtattgtgcatgctgagtCACTggaatagcttactgggacacttgatggaactgagccatcgttaaggttatcaatgtcagctgtgcttttcctactatgacaagtccaaatgtctgctgtgaaaaaggtccattaccATGCAGATATAAGGGAAGCTTGGACACTGCTCATTGTGGGTGACATTTCT

Function

symbol description
march5 Predicted to enable zinc ion binding activity. Acts upstream of or within convergent extension. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in central nervous system; eye; and optic vesicle. Orthologous to human MARCHF5 (membrane associated ring-CH-type finger 5).

NR:

description
E3 ubiquitin-protein ligase MARCH5

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K10660 MARCH5; E3 ubiquitin-protein ligase MARCH5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039784912.1 True 2569 mRNA 0.51 6 28412266 28447794
XM_039784913.1 False 2182 mRNA 0.53 6 28414346 28447794

Neighbor

gene id symbol gene type direction distance location
btaf1 btaf1 coding upstream 61279 28320747 ~ 28350987 (+)
blnk NA coding upstream 136267 28231795 ~ 28275999 (+)
vent NA coding upstream 512062 27891450 ~ 27900204 (+)
vox NA coding upstream 524657 27886243 ~ 27887609 (+)
LOC120548504 kndc1 coding upstream 533698 27808304 ~ 27878568 (+)
LOC120547570 kmo coding downstream 39729 28487523 ~ 28508440 (+)
LOC120547955 rmdn2 coding downstream 187534 28635328 ~ 28686068 (+)
LOC120547521 nanp coding downstream 316603 28764397 ~ 28770079 (+)
LOC120548038 tuba1c,LOC108255233,LOC103148207,LOC108247626,LOC106920718,LOC101079871,LOC101066234 coding downstream 339252 28787046 ~ 28789905 (+)
si:dkey-187a12.4 LOC104933667,LOC104950525 coding downstream 342990 28790784 ~ 28801376 (+)
LOC120548567 NA non-coding upstream 783 28409470 ~ 28411483 (+)
G197270 NA non-coding upstream 160714 28250758 ~ 28251552 (+)
G197237 NA non-coding upstream 406107 28004577 ~ 28006159 (+)
G197158 NA non-coding upstream 1042335 27369236 ~ 27369931 (+)
G197146 NA non-coding upstream 1110898 27300110 ~ 27301368 (+)
G197287 NA non-coding downstream 1786 28449580 ~ 28452009 (+)
G197299 ide,LOC104941703,LOC102291663 non-coding downstream 17352 28465146 ~ 28474917 (+)
G197378 NA non-coding downstream 61184 28508978 ~ 28510477 (+)
G197409 NA non-coding downstream 259089 28706883 ~ 28707205 (+)
G197439 NA non-coding downstream 419508 28867302 ~ 28867503 (+)
ccnj ccnj,LOC102785723 other upstream 109933 28294205 ~ 28302333 (+)
LOC120548047 adgra1,LOC103360772 other upstream 631225 27554928 ~ 27781041 (+)
LOC120548261 LOC102312438,LOC102207415,LOC101470427 other upstream 900674 27451950 ~ 27511592 (+)
LOC120547882 inpp5a other upstream 1303126 26926418 ~ 27109140 (+)
pwwp2b pwwp2b other upstream 1458461 26874215 ~ 26953805 (+)
LOC120548242 ccdc85a,LOC104955469,LOC102783086,LOC102310250,LOC102209339,LOC100696856 other downstream 664894 29112688 ~ 29177494 (+)
G197531 NA other downstream 900631 29348425 ~ 29349928 (+)
LOC120547718 LOC102789565,LOC100690068,LOC101471749,LOC103357097 other downstream 1071147 29518941 ~ 29619016 (+)
LOC120547658 NA other downstream 1705717 30153511 ~ 30201820 (+)
G197999 NA other downstream 2786570 31234364 ~ 31234723 (+)

Expression


Co-expression Network