valopa (valop,LOC104938804,LOC106940109,LOC107093123)



Basic Information


Item Value
gene id valopa
gene name valop,LOC104938804,LOC106940109,LOC107093123
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 27176968 ~ 27206666 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence


>XM_039784914.1
CGTCTATATAAGAGCTTCCAGGATGCCACATATCGGTCATTCACGCGTTTGTTGCCAGCGCTTTCCAAGACATCGCCTCTTCCCGCACCTTGAACCGTGCGCACCGCCACTACTCCGCTCTCACACGTAGCTCTACCCACGCTTTCCAATCGCggatttatttccctctctctcgTGCAGCCAATGCGGATTTCACCACAAAAACTTTGTGAAAGAAGAGTCCCAGGGCGCATAGGATGCTCCGCAGCGCAGAGAGCGAGTTTAACGCAAACTAGTGAGCTCGCACTGTTCAGGAGGGACTCCACGTGAAGTTGGGAGTGTGAGAAACAGAACTGAAACAGGatttgtttcccccccccctcgtTTAGTGTGGCCTACACGCTGGGTATAGACAATGGATACTTTAAGTCTGTCAGTGAACGCTGTGTCCTACACAGCAGCGGCTGAACTCTTCACTCCTGATGACCCGTTTAAAGGACCCATCAAGACCATCGCGCCGTGGAACTTCACTTTCCTGGCTGTGTTCATGTTCTTCGTCACCTCCGTGTCTCTGAGCGAAAACTTCCTCGTCATGTTTGTCACTTTCAAGTACAAACAACTCCGACAGCCTCTGAACTATATCATACTTAATTTGGCAATCGCAGATTTTTTGCTCTCTCTCATCGGTGGAGTAATAAGTTTCCTGACAAACTCCAGAGGTTATTTCTTTCTTGGGAGGTGGGCTTGCGTCTTGGAGGGGTTTGCTGTCACTTTTTTCGgGATTGTGGCCATGTGGTCCCTCTCTGTTCTGTCCTTCGAACGATTCTTCGTGGTCTGCCGGCCTATGGGAAACATCCGACTGCAAACGAAGCATGCGGTCCTGGGTCTGGTGTTCGTCTGGACCTTCTCCTTCATCTGCACCATCCCTCCAGTGCTGGGCTGGAACAGTTACACTACAAGCAAGATCGGAACCACCTGTGAGCCTAACTGGTATTCAACCAGCCTGATCGATCACAGCTACATCATCGTTTTCTTCATCACCTGTTTCATTCTGCCTCTCGGAGTAATATTTTACTGCTATGGAAAGCTCCTGCAGAAGCTCAGGAAGGTATCTCATGGTCGTGTGGCTGGAGCCAAGAAGCCAGAGAGGCAGGTGACCCGTATGGTGGTTGTGATGATTGTGGCCTACATGGTGGGATGGACGCCGTACGCAGCCTTCTCCATACTGGTCACAATTCATCCAACCATCAAACTTGACCCCGGGCTGGCTTCCATCCCCGCCTTCTTTTCCAAGACCACTGCTGCCTACAACCCAGTCATCTATGTCTTCATGAATAAACAGTTCAGGAAGTGCCTAATTCAGCTCTTCGGCGGCAAGGTGACCATCCCAGACAGCAATATGAACCAGACCTCAGAGCGACCTGGAATTACTGCAGAGAGTCAAATAGGAGAAATGTCAGCCATTGCGGCCCGCATACGCGAGAGTGGCTCTATGTCACCCAAGTCTGGTGGTTCTCCAACTGAATGTGGCTCGTTTGTCCAACTGCCGATCCCAGAAAACAAAGTGTGTCCAATGTAACGGTAAACTAATCCCAATAGGTGTTCTCTCACTATCCTCTGACACCCATAGTCCATAATAACCTTCTATAATCTAGATGTACTGTgtttcaaaaaacattttggacAGATCtttaaacattatatatatgtttatatatatctgCTAATGTGTCAGGGCACTTGATTAGACTTGATAGCTTTTGCCTTCATATCccaatgaaaaaaagagaccaAACCTTGACATTAGTGAGTTGAGGGCTAGCCAGTTTTTTTCAGCCTTTTATCTCGTCCTCGCCTTCTCCTTTGAAGCCCTGTGATGGTGCCTGTTGAGAAAGCGTTGTTTTTTCTATGCTGTTTCAGTACTTCACTTTGGCAGTGCATCTTCATTCGTCTTCGCTCGTCAAGAGGACGGAGCAGTCTTCTGAATTTGGATACTTTTTACTTTAGTTCATAGTTTAGGTCAAAGCTTTTATCTTTATAGAAGATGGCCAATGGGACTTGGAGATGCCAGTCTCCTGTTGCCTCTGCTGCAGATGTAGGACAACATATATATGAAGTGCCAGCAGGGgatcaacaaacacaaaaatacacacaactaCAAGCAACACATAGATACATCACACAGGCATGCacatacacttttatgcacacacacacacacacacacacacacacacagattgcaGTTCACTTCCTGTATTATACGTAATGCGCTCTCTATAGGCACTGTGATGATACAATGCAACAATAAATACAAGAGTGGCTTAGCTAAGCAGCCATGTACAAAAGCAATGAGTATTGCCATCATAAGCACAGGTCAACAGCAATATCAAAGCTAAATACTGTCACACAGTTGAACACTTCAGCATTACTGTACAGTAGCTGTAGGAGTGAGTGTTAAAATGTCTTCTACTTGACTTTGTGGTGCATGTTTGTTATATATTTGGATATTTGTCAAAACACTGTTGTATTCTCTATGCTGCACAGTGATTCACCATGTTAAAAATAGCAACAGTATGGTATCTGTTTGCAATGTACTGTGTGTTCCAATCATGTTCGGCCAGTCTGTTAGGAGTAAAATCTTGCTTCTATAAGAATCATCTGTGCCAAATGAATTCTGATGCCTTGATATAATTAGCATAACAACGTGAGACCATTTTATTTCACACCATACTAAGCTTTATTCTGCCATTACCAGAAACATCCTATTTTATGGCGTCAATCCAAATTTCTTGCAAATGTGAAATGTGGTTCACTTGCCAGTAGATATTTCCAATATTCTCATAGATGGCCTCTTTTTGTGGTAATTACACCAATGTCAACATTGAATACTTAATTTATTGATGTTACAATGTTCAAGCCATATCCTAGGTTTGTCACAATTAGCTGTTACTGTTTGCAaaagtaaaaggaaaaaaaaaacactaaatgtTAAATTCCAGCATAGGCATGTTGTTTGACaatgttttccctttttaattatattttataattgttGGCATTATCACCATTACATTCAAACAATTCCAACTTGTCTTGCAAATGGGTCTATACCAGCTGCCTCAAGGGATTGTTGTATAATctgtttaaacatttttagataATAGTgcagtatatatgtgtataaagTATATAGGTAGCCTACAGTGTACAACCACAACAGTGTGGGAAATGAAGGACAAGAAAAGGCCATACTTAAAAGTGACAATGAACTATGCCTTAAATTGTTTTCACTCTGACCTCTGCAGTGTAATAACCAGTGTAATGTCATAAATGTCCTCCAAATTCAATATCACAGGGATAGTTTCGATTTTTGAAGGTACATATGAATGCATGGACATGAGGCAGAGGCAACCAGTCATGTGGTTGCCAATCTCCCAGTGAGCCAGGGGCTTCATCCAATAAAACAagcagagtcacacacacagctaacaaAAAGATGTAAATGCTCCAAGCACCCTGTCCATCACATCATGGTCCAGCTTTCAGTAATACATTGgtttaacaaataaaactgtTCCAAGGTTACTGTGAAGTCTAAGAGAAGAATCCAGCAAACAGAACAGAAGATgcttcatttttttgttgtgtttttgtgtcctgAAAGTTGCTCATTTCTGGATGACAAGGCCACGTCTCAATGGAAAATCTCCAACCACAGCTCTGCCTACCTAAGCTAACCTCCGTGCATCAATATCACAACTCCTCAGCGACTCATACTATCTACACACTCTGTCTTCGCCAGCCAATACCAATTAATTTAACCTATCCCAAGCCTTCCCACTAccgacacacatacactcacacacacacacacacatacaaaaaaacatacatacaggcTTGTCATACGGTAGGTGTGTGGGGGCTTTTCGAAGTAGGGACTTCACCTTGAACATCTGACAGGATATAAATCAAACAAACCTGCCAGTGTTACATTTTGGTGCAAGGATTACAGACTGCACTGCATGCTGATAAGGGGAGGGAACACTTCCAACATACATGGGTTAAAGTTCTATTTCTCACCTCCCAACCCTGAATATCAACCACTCCACTTGTATGTTGTGATGTACTTAGAAAAGGCATGTCAAGACTGGTTCTGTTGTATGTTCTTTTGTGTCGTTGGTACTTTTGTCTTGATTTACATGGGTTTACAAGTTTACAGTAGATGCACTCTGGTTAATAAAAATGTCTGtattaaagtatattttttgaAAAGCAA

Function


NR:

description
PREDICTED: vertebrate ancient opsin

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_039784914.1 True 4261 mRNA 0.43 5 27176968 27206666

Neighbor


gene id symbol gene type direction distance location
LOC120547537 NA coding upstream 303300 26865625 ~ 26873668 (+)
LOC120547700 plac9 coding upstream 409630 26758333 ~ 26767338 (+)
mcfd2 mcfd2 coding upstream 554398 26619417 ~ 26622570 (+)
calm2a calm1,LOC102778633,LOC102293206,LOC107396020 coding upstream 645242 26527783 ~ 26531726 (+)
si:ch73-105b23.6 LOC104955877 coding upstream 655391 26495508 ~ 26521577 (+)
LOC120548504 kndc1 coding downstream 601638 27808304 ~ 27878568 (+)
vox NA coding downstream 679577 27886243 ~ 27887609 (+)
vent NA coding downstream 684784 27891450 ~ 27900204 (+)
blnk NA coding downstream 1025129 28231795 ~ 28275999 (+)
btaf1 btaf1 coding downstream 1114081 28320747 ~ 28350987 (+)
G197089 NA non-coding upstream 34182 27142571 ~ 27142786 (+)
G197087 NA non-coding upstream 60454 27115966 ~ 27116514 (+)
G197084 nkx6-2,LOC102789131 non-coding upstream 72460 27064726 ~ 27104508 (+)
G197069 LOC103370964,LOC104925911,LOC102295618,LOC103148144 non-coding upstream 430883 26740257 ~ 26746085 (+)
G197035 LOC104925924,LOC104948680,LOC103376065 non-coding upstream 549266 26624635 ~ 26627702 (+)
G197137 NA non-coding downstream 58613 27265279 ~ 27265508 (+)
G197143 NA non-coding downstream 92502 27299168 ~ 27299994 (+)
G197146 NA non-coding downstream 93444 27300110 ~ 27301368 (+)
G197158 NA non-coding downstream 162570 27369236 ~ 27369931 (+)
G197237 NA non-coding downstream 797911 28004577 ~ 28006159 (+)
LOC120547882 inpp5a other upstream 67828 26926418 ~ 27109140 (+)
pwwp2b pwwp2b other upstream 223163 26874215 ~ 26953805 (+)
tmem254 NA other upstream 441181 26725716 ~ 26735787 (+)
G197053 NA other upstream 513183 26663159 ~ 26663785 (+)
stpg4 LOC103353520,LOC101467386,LOC102793681,LOC102299197 other upstream 628208 26535284 ~ 26548760 (+)
LOC120548261 LOC102312438,LOC102207415,LOC101470427 other downstream 245284 27451950 ~ 27511592 (+)
LOC120548047 adgra1,LOC103360772 other downstream 348262 27554928 ~ 27781041 (+)
ccnj ccnj,LOC102785723 other downstream 1087539 28294205 ~ 28302333 (+)
LOC120548242 ccdc85a,LOC104955469,LOC102783086,LOC102310250,LOC102209339,LOC100696856 other downstream 1906022 29112688 ~ 29177494 (+)
G197531 NA other downstream 2141759 29348425 ~ 29349928 (+)

Expression



Co-expression Network