pitx3 (pitx3,LOC108239172,LOC106916517)


Basic Information

Item Value
gene id pitx3
gene name pitx3,LOC108239172,LOC106916517
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 34868579 ~ 34892999 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039784952.1
TGTGGGGATCAAGCCTCACTACTCCGCAGCCTTCATGTTTGACAGCacagagggaagaagaagaacagaagaagaacagaagaaggagaaggagaagaagaagaaggaaactGACTGACGCTTTTTCTGACTTTCTGACGCACCGGGGAACTTTTTGTCCATGTCACCAGCAAGCCTGAGGCCAGGACACCCATCAGCCTGTAGCAAAGCTCTTTGCCTTTTCCACGGATTAATTTAACCAGACCTACCAGGGATTCGATAGCCTGGTTATGGATTTTAACCTGCTGACGGACAGCGAAGCCCGCAGCCCGGCGCTGTCGCTCTCCGACTCCGGGACCCCGCAGCACGAGCCGGGATGTAAAGGCCAGGACACCAGCGacaccGAGAAATCCCACCAGAACCAGCTGGATGAGTCCAGCGCTGACGACGGCTCTCTGAAGAAGAAGCAGCGGCGGCAGAGGACTCACTTCACCAGCCAGCAGCTGCAGGAGCTGGAGGCCACCTTCCAGAGAAACCGCTACCCCGACATGAGCACCAGAGAGGAAATCGCAGTGTGGACCAACCTCACGGAGGCACGGGTCAGGGTATGGTTCAAGAACCGCCGTGCTAAGTGGAGAAAGCGCGAGAGGAACCAGCAGGCAGAGTTATGCAAAAATGGCTTTGGTGCCCAGTTCAATGGACTCATGCAGCCCTACGACGACATGTACACTGGCTACTCCTACAACAACTGGGCTACCAAGAGCCTAGCGAGCAGCCCGCTCTCTGCCAAGAGCTTCCCATTCTTTAACTCAATGAATGTAAGCCCCCTATCCACCCAGCCCATGTTCTCCCCCCCCAGCTCCATCCCCTCCATGAACATGGCCTCTGGCATGGTGCCCTCAGCGGTGGCCGGGGTTCCCACTACGGGGCTCAACAACCTGGGCAACCTCAACAACCTCAACAGCCCCACGGCGCTCAACTCGGTAGCGGTGAGTGCGGCCACGTGCCCCTACGCCACCACAGCCAGTCCCTACATGTACAGAGACACCTGCAACTCCAGCCTGGCCAGCCTGCGGCTCAAGGCCAAGCAGCACACCAACTTTGCTTATCCGGCAGTGCAGAACCCCGTGTCCAACCTGAGCCCCTGCCAGTATGCTGTGGACCGGCCGGTATGAAGAAGAAGCTCCGACCTGACCCAACTGACCAGCTGTAAGTCCACTAGTCCCCCCCTCCCTCACCCCCCACTTCACATCTCTTCAGTTCCATCTGTAAACTGCCAGATGTGCTGCAGACTGGCAGATCGTGTTGTGATGGTACACAATAAGAATAATCTTTGAAACTGACACAGCAAATAGACCTGCCCGGATGGACCACCGCGCTTCAAAAGGAATTCTTTCCAGTTTGTGAGACTCTGTCGCTGAACTGACCAACTGCAACAAAGGATTTCTAAAGATTATGCCCATTATCATTTTGTTTCCTTCTTTTGAACTGCATGATTCGAGTAAACGTAGAAACCAAGAGTAAATAAAACACGGATGCTTCAACTGGACTGGTGGTCAACATCTTGGCCCAAAAAACATCAAATGCGATCTTTGCAACTGTCGCAGGAAAAGAGACCTGTGGTTGCAATGCGGGACAAATGGAGGATGTATATAATGgactttgtttgttttgtatgtgacaaaaaaatatatgaaaacgTACTTTAAAGATGAGAAAAGCATGTTCTTCAAAAGCAAAGGCCCTAGGTTTATGTACTATGAGCTCATCCTTTAGGAACTCGAAACTTTGTTGTGAATTCTTCTCCCCTTTGGAAGGccataggtcaaaggtcagcttGGATGGGCAAGAGGAGGGCAGTCCTGGAAAGTGAACGCAACCTCATGcaattaaacacaaaaacaacaatttacTTACACATACCAGAATATCAGATTTTTCAAGTAAAACTCTAAAAAGCCATTGAGTATATAGATTTGTGTGGTGTTATACAAAGGGAGTCcatgactgtaaaaaaaaaaaaatgtatgtaagaGTGCAGTtgtcataacaaaaaaaaacaagctttttttttcctggtgtAGCCTGCTTTGTCTCATTAAAGAACCAATTAAAGGATCCGTTTTTATGAACAACAAAATGGACTTCACCATT
>XM_039784953.1
GCTGCCGGGCCAGCCAGCCTCTCAGCACCACATTGACACCAGGCCTCCATCCATCACTGCCACGGGCCGATTTAGCTCCCCGGACTGGCTCGCATGTATTATTCTGACCACATCATTGGACCTTGCTAATACTAGACCTGGGGGACAGCTGTTGCTCTGTCAGGCGAGGACGCTGACTGTTCCACAGCCACTGGGACCTGTTGGTGGAGTCtgtttgatttataaaaaacccAGGGAAACGGCTCAGCACAGCAAAAGAGCCTGGTTATGGATTTTAACCTGCTGACGGACAGCGAAGCCCGCAGCCCGGCGCTGTCGCTCTCCGACTCCGGGACCCCGCAGCACGAGCCGGGATGTAAAGGCCAGGACACCAGCGacaccGAGAAATCCCACCAGAACCAGCTGGATGAGTCCAGCGCTGACGACGGCTCTCTGAAGAAGAAGCAGCGGCGGCAGAGGACTCACTTCACCAGCCAGCAGCTGCAGGAGCTGGAGGCCACCTTCCAGAGAAACCGCTACCCCGACATGAGCACCAGAGAGGAAATCGCAGTGTGGACCAACCTCACGGAGGCACGGGTCAGGGTATGGTTCAAGAACCGCCGTGCTAAGTGGAGAAAGCGCGAGAGGAACCAGCAGGCAGAGTTATGCAAAAATGGCTTTGGTGCCCAGTTCAATGGACTCATGCAGCCCTACGACGACATGTACACTGGCTACTCCTACAACAACTGGGCTACCAAGAGCCTAGCGAGCAGCCCGCTCTCTGCCAAGAGCTTCCCATTCTTTAACTCAATGAATGTAAGCCCCCTATCCACCCAGCCCATGTTCTCCCCCCCCAGCTCCATCCCCTCCATGAACATGGCCTCTGGCATGGTGCCCTCAGCGGTGGCCGGGGTTCCCACTACGGGGCTCAACAACCTGGGCAACCTCAACAACCTCAACAGCCCCACGGCGCTCAACTCGGTAGCGGTGAGTGCGGCCACGTGCCCCTACGCCACCACAGCCAGTCCCTACATGTACAGAGACACCTGCAACTCCAGCCTGGCCAGCCTGCGGCTCAAGGCCAAGCAGCACACCAACTTTGCTTATCCGGCAGTGCAGAACCCCGTGTCCAACCTGAGCCCCTGCCAGTATGCTGTGGACCGGCCGGTATGAAGAAGAAGCTCCGACCTGACCCAACTGACCAGCTGTAAGTCCACTAGTCCCCCCCTCCCTCACCCCCCACTTCACATCTCTTCAGTTCCATCTGTAAACTGCCAGATGTGCTGCAGACTGGCAGATCGTGTTGTGATGGTACACAATAAGAATAATCTTTGAAACTGACACAGCAAATAGACCTGCCCGGATGGACCACCGCGCTTCAAAAGGAATTCTTTCCAGTTTGTGAGACTCTGTCGCTGAACTGACCAACTGCAACAAAGGATTTCTAAAGATTATGCCCATTATCATTTTGTTTCCTTCTTTTGAACTGCATGATTCGAGTAAACGTAGAAACCAAGAGTAAATAAAACACGGATGCTTCAACTGGACTGGTGGTCAACATCTTGGCCCAAAAAACATCAAATGCGATCTTTGCAACTGTCGCAGGAAAAGAGACCTGTGGTTGCAATGCGGGACAAATGGAGGATGTATATAATGgactttgtttgttttgtatgtgacaaaaaaatatatgaaaacgTACTTTAAAGATGAGAAAAGCATGTTCTTCAAAAGCAAAGGCCCTAGGTTTATGTACTATGAGCTCATCCTTTAGGAACTCGAAACTTTGTTGTGAATTCTTCTCCCCTTTGGAAGGccataggtcaaaggtcagcttGGATGGGCAAGAGGAGGGCAGTCCTGGAAAGTGAACGCAACCTCATGcaattaaacacaaaaacaacaatttacTTACACATACCAGAATATCAGATTTTTCAAGTAAAACTCTAAAAAGCCATTGAGTATATAGATTTGTGTGGTGTTATACAAAGGGAGTCcatgactgtaaaaaaaaaaaaatgtatgtaagaGTGCAGTtgtcataacaaaaaaaaacaagctttttttttcctggtgtAGCCTGCTTTGTCTCATTAAAGAACCAATTAAAGGATCCGTTTTTATGAACAACAAAATGGACTTCACCATT

Function

symbol description
pitx3 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within adenohypophysis development; lens fiber cell differentiation; and positive regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in several structures, including ectoderm; head; immature eye; nervous system; and neurogenic field. Human ortholog(s) of this gene implicated in anterior segment dysgenesis; anterior segment dysgenesis 1; cataract; cataract 11 multiple types; and cataract 9 multiple types. Orthologous to human PITX3 (paired like homeodomain 3).

NR:

description
PREDICTED: pituitary homeobox 3

GO:

id name namespace
GO:0002088 lens development in camera-type eye biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0021984 adenohypophysis development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09357 PITX3; paired-like homeodomain transcription factor 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039784952.1 True 2133 mRNA 0.50 4 34868579 34892999
XM_039784953.1 False 2131 mRNA 0.50 4 34872610 34892999

Neighbor

gene id symbol gene type direction distance location
LOC120548189 LOC103376442,LOC100702930,LOC102197432 coding upstream 157834 34691392 ~ 34710745 (+)
si:ch211-250c4.3 NA coding upstream 601367 34208791 ~ 34267212 (+)
fbxo28 fbxo28 coding upstream 689313 34164935 ~ 34179266 (+)
polr1c polr1c coding upstream 709805 34142536 ~ 34158774 (+)
si:dkey-191g9.7 NA coding upstream 730320 34130003 ~ 34138259 (+)
eno4 NA coding downstream 148929 35041928 ~ 35080823 (+)
kcnk18 NA coding downstream 385946 35278945 ~ 35295506 (+)
LOC120548394 slc18a2 coding downstream 532475 35425474 ~ 35490817 (+)
LOC120547824 slc18a2 coding downstream 710240 35603239 ~ 35753438 (+)
slc18a2 slc18a2 coding downstream 959073 35852072 ~ 35904563 (+)
G198696 NA non-coding upstream 154699 34713528 ~ 34713880 (+)
G198683 NA non-coding upstream 196413 34671918 ~ 34672166 (+)
LOC120547566 NA non-coding upstream 214517 34633305 ~ 34654062 (+)
LOC120547565 NA non-coding upstream 264206 34598539 ~ 34604373 (+)
G198654 NA non-coding upstream 275490 34592597 ~ 34593089 (+)
G198739 NA non-coding downstream 65078 34958077 ~ 34962980 (+)
G198756 NA non-coding downstream 136933 35029932 ~ 35030273 (+)
G198778 NA non-coding downstream 204520 35097519 ~ 35097847 (+)
G198786 LOC100701856,LOC101472718,LOC106513841,LOC108239171,LOC102791659 non-coding downstream 274871 35167870 ~ 35202138 (+)
G198841 NA non-coding downstream 500132 35393131 ~ 35393461 (+)
si:ch211-51a6.2 LOC104924867,LOC103357113,LOC100694100 other upstream 860576 33981511 ~ 34008003 (+)
slc2a15a LOC103367959,LOC104935160,LOC103476520,LOC106961144,LOC103155793 other upstream 1668717 33157729 ~ 33199862 (+)
G198245 rab1a,LOC104962072,LOC102231865 other upstream 1903505 32962388 ~ 32965074 (+)
G198185 NA other upstream 2073918 32793288 ~ 32794661 (+)
G197999 NA other upstream 3633856 31234364 ~ 31234723 (+)
LOC120548523 NA other downstream 2184 34895183 ~ 34948460 (+)

Expression


Co-expression Network