LOC120547566


Basic Information

Item Value
gene id LOC120547566
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 34633305 ~ 34654062 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005637078.1
GGCTCGGATTGAATCTGGCGGAAGCATGACTTCAtgtcagcctttttttttttgtctgtgccAAGCATTTTGTTAATATCCTGGATTGTCAGGGTGCTGTGTTGTGGTTGAACCTACTACACCATCTGACAGAACAACACTGTTGTTAGATTTACATacAGGAAATCCAACTGCCTCTTGCTGTTGTGCCAGGACTCTTTCTCCACGAGCACCCAAAGAGGAAAGGTGTGACACAGCTGATCCTGGACCAGCTGACTGGAGGGGCTGTGGTGTTGAAGCAGCCACCTCAGACTCCTCTCTACTCCCTGCCTGGTCAAGGACTGGGATCCTGTTTCAGCTGAGGggagagtctgtgtgtctgcaacAGGCTGCTCCGCCAACGCTCAGGTTACGCTGAGGAGGTTCAACATGGACTCCAGGATACTCTGCGACTTCTACAGGTGCACCATGAAGAGTATCACCGTCTGGTAGTTCCAGGCTCTACAGAGGGTTTAAGGACGTGTTGTGCAGCTGGAACGTGGGGCAGATGCTCCTGGTGGAAATCAGGGGACATGGCATGGATGACAACCGCATCACTCGGAGCATTTCTCTGTGTAAGAGAATTGTCAGCAAGTTCTCTTACAGCTGGAGAACAAGAAGAGAGCTGGCTCAAGTCCAGATTCAGCTGGGTCTGCCGGCTCGCCAGCTCATCACAAAGTCAGCCAGCCGCTGGGGACCAAGGCAGCAAATGATGGACAGGGTCCTGGAGCAGGAGGGAACACTCTCAAAAGTCCTGTCTCCTTACAAAAAGTCCAGGCATAATGGGGGAAATGAACAAAATTGAGATTGTAGCTTATTACATTAGTCTGAGGGATTTTAGCTGAGGGACAGAAGATCAAAGTGTCATATTAtcaaaatgtcatgttttcctGACAAATGGTTAGGAGACAGCAACAGGGGGGGCAGTTCTTCTacaccagagatcttcaaccgTGGGTCCGCGACCCCTAAGGAGTCCTTTTACTGTAGGGGGGCCGCCTGATTATTGTttgatcatgttttttttcaaagatttaaatttgtctaaaaatatacattaacatgaatctaaCATTATTAGCAAAGTCTTTTTGCTAAAAAGAACATTTCATTTACACAATAATTATGATAGGCTTACTATAGGTTAGACAAGATGCCTAGACAAGAGATGGCCTTCCTCCAGGCAGAGGCAAGAGAAACCGAAAGGCTTCAGAGTGGTTTTCACGAAACCAGAAGAAACTAGAGAGCTCTGTGACGCCGCatggtgctccgcatggtgctccgcatggtgctccatCGTGTCAGCGGTAGTTGATGGTCcagttacccgagaataggtgactttgagccgggtacataGCACCACGAGATGCCGATCGTTTCGGAGGACATTGCGGTTAAGTTTCGGTGACAAAAACTGAGCGACATGCAGCAacgaaagttaagtttaggcaccaaaaccacTAGTTacatttaggaaaaagatcgtggtttggattaaaacactcccaaggaacacacCTTTTAGTCAATACTTGAATACTTACGAATCATTAATAATTTGtgagtacacacaaacacatacactcacacagaaTAAGAAGAGTAAAAGTAAATTGTGACAAATTTTGCAGCTTTAGGAAAAGTATAGATAATGAGTTAGTGTTTGATGTGTAGCTTGGGTTGTGTTTGTAGGTTTCATTTTGGCATAAATATGAATTTAGCAACAGACGTCCGGGGTGTCCCGGATGTCCCATTGAGGGGCATGTCGGTGGAGGATATGTATTCAAAGAACTGGAGTTACATATTGTAACTACTCAATTTGCCACTtgccagatgtacgtacatttgggaatgtagcgttatcagcgccatggccaacccgcagaaagcgcacgctgtgatacttaagcttacgtcgtatttaccaaacctgcagctcatcgggtaatcagcgcctttcccgcccactataccgtaaattgcgcacATCTTTCTGTCATGGATCAAACACCAAGTCAGTCAAAACAGCGAAAACAAAGATTTAGAGATAACAAAGTTGATCTGCTTGTTTATGAAGTAACAGCTTGATGTGTGTTATTTTGGCATTAGTGGTGGGGAAAAGTATGTATTGACtagtgcgctgtagcaaagcattaagtactggtgctatgatagggctgagtgcagactgcgatattcccactgctgatgctatgactgtttgaaatgatcctgatgccaatatctgtaatgtagcgaggagtttaacaactgctggaatggaatgtgaactcTGAGTCTGAGATCAAATGttatctttgatttcttccagtaactgtaatattgcatggctgcttaatctgtaacgcttaatgattttgtgttcactcaacaaaaaaagtgtgatccttagctcgtctccttggcctatgtctCCGTCTTGCTGGGATTAccgctgccatttcaccaggaggcatatgcgAGGAAACCTGCTTGTggctggtttacacctgcttttaagaggcggagaattttcacCACAAAATAGAGGCGCGCTTTCACGGGcgttttttgtacataccgCACAATACATAATAAATAACAACACGTTACGCttctcctcccatctctttatggtagggtgaccagatttcccggagcta
>XR_005637079.1
GGCTCGGATTGAATCTGGCGGAAGCATGACTTCAtgtcagcctttttttttttgtctgtgccAAGCATTTTGTTAATATCCTGGATTGTCAGGGTGCTGTGTTGTGGTTGAACCTACTACACCATCTGACAGAACAACACTGTTGTTAGATTTACATacAGGAAATCCAACTGCCTCTTGCTGTTGTGCCAGGACTCTTTCTCCACGAGCACCCAAAGAGGAAAGGTGTGACACAGCTGATCCTGGACCAGCTGACTGGAGGGGCTGTGGTGTTGAAGCAGCCACCTCAGACTCCTCTCTACTCCCTGCCTGGTCAAGGACTGGGATCCTGTTTCAGCTGAGGggagagtctgtgtgtctgcaacAGGCTGCTCCGCCAACGCTCAGGCTGAGGAGGTTCAACATGGACTCCAGGATACTCTGCGACTTCTACAGGTGCACCATGAAGAGTATCACCGTCTGGTAGTTCCAGGCTCTACAGAGGGTTTAAGGACGTGTTGTGCAGCTGGAACGTGGGGCAGATGCTCCTGGTGGAAATCAGGGGACATGGCATGGATGACAACCGCATCACTCGGAGCATTTCTCTGTGTAAGAGAATTGTCAGCAAGTTCTCTTACAGCTGGAGAACAAGAAGAGAGCTGGCTCAAGTCCAGATTCAGCTGGGTCTGCCGGCTCGCCAGCTCATCACAAAGTCAGCCAGCCGCTGGGGACCAAGGCAGCAAATGATGGACAGGGTCCTGGAGCAGGAGGGAACACTCTCAAAAGTCCTGTCTCCTTACAAAAAGTCCAGGCATAATGGGGGAAATGAACAAAATTGAGATTGTAGCTTATTACATTAGTCTGAGGGATTTTAGCTGAGGGACAGAAGATCAAAGTGTCATATTAtcaaaatgtcatgttttcctGACAAATGGTTAGGAGACAGCAACAGGGGGGGCAGTTCTTCTacaccagagatcttcaaccgTGGGTCCGCGACCCCTAAGGAGTCCTTTTACTGTAGGGGGGCCGCCTGATTATTGTttgatcatgttttttttcaaagatttaaatttgtctaaaaatatacattaacatgaatctaaCATTATTAGCAAAGTCTTTTTGCTAAAAAGAACATTTCATTTACACAATAATTATGATAGGCTTACTATAGGTTAGACAAGATGCCTAGACAAGAGATGGCCTTCCTCCAGGCAGAGGCAAGAGAAACCGAAAGGCTTCAGAGTGGTTTTCACGAAACCAGAAGAAACTAGAGAGCTCTGTGACGCCGCatggtgctccgcatggtgctccgcatggtgctccatCGTGTCAGCGGTAGTTGATGGTCcagttacccgagaataggtgactttgagccgggtacataGCACCACGAGATGCCGATCGTTTCGGAGGACATTGCGGTTAAGTTTCGGTGACAAAAACTGAGCGACATGCAGCAacgaaagttaagtttaggcaccaaaaccacTAGTTacatttaggaaaaagatcgtggtttggattaaaacactcccaaggaacacacCTTTTAGTCAATACTTGAATACTTACGAATCATTAATAATTTGtgagtacacacaaacacatacactcacacagaaTAAGAAGAGTAAAAGTAAATTGTGACAAATTTTGCAGCTTTAGGAAAAGTATAGATAATGAGTTAGTGTTTGATGTGTAGCTTGGGTTGTGTTTGTAGGTTTCATTTTGGCATAAATATGAATTTAGCAACAGACGTCCGGGGTGTCCCGGATGTCCCATTGAGGGGCATGTCGGTGGAGGATATGTATTCAAAGAACTGGAGTTACATATTGTAACTACTCAATTTGCCACTtgccagatgtacgtacatttgggaatgtagcgttatcagcgccatggccaacccgcagaaagcgcacgctgtgatacttaagcttacgtcgtatttaccaaacctgcagctcatcgggtaatcagcgcctttcccgcccactataccgtaaattgcgcacATCTTTCTGTCATGGATCAAACACCAAGTCAGTCAAAACAGCGAAAACAAAGATTTAGAGATAACAAAGTTGATCTGCTTGTTTATGAAGTAACAGCTTGATGTGTGTTATTTTGGCATTAGTGGTGGGGAAAAGTATGTATTGACtagtgcgctgtagcaaagcattaagtactggtgctatgatagggctgagtgcagactgcgatattcccactgctgatgctatgactgtttgaaatgatcctgatgccaatatctgtaatgtagcgaggagtttaacaactgctggaatggaatgtgaactcTGAGTCTGAGATCAAATGttatctttgatttcttccagtaactgtaatattgcatggctgcttaatctgtaacgcttaatgattttgtgttcactcaacaaaaaaagtgtgatccttagctcgtctccttggcctatgtctCCGTCTTGCTGGGATTAccgctgccatttcaccaggaggcatatgcgAGGAAACCTGCTTGTggctggtttacacctgcttttaagaggcggagaattttcacCACAAAATAGAGGCGCGCTTTCACGGGcgttttttgtacataccgCACAATACATAATAAATAACAACACGTTACGCttctcctcccatctctttatggtagggtgaccagatttcccggagcta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005637078.1 True 2684 lncRNA 0.45 5 34633305 34654062
XR_005637079.1 False 2679 lncRNA 0.45 5 34633305 34654062

Neighbor

gene id symbol gene type direction distance location
si:ch211-250c4.3 NA coding upstream 366093 34208791 ~ 34267212 (+)
fbxo28 fbxo28 coding upstream 454039 34164935 ~ 34179266 (+)
polr1c polr1c coding upstream 474531 34142536 ~ 34158774 (+)
si:dkey-191g9.7 NA coding upstream 495046 34130003 ~ 34138259 (+)
ndst2a ndst2 coding upstream 508432 34092137 ~ 34124873 (+)
LOC120548189 LOC103376442,LOC100702930,LOC102197432 coding downstream 37330 34691392 ~ 34710745 (+)
pitx3 pitx3,LOC108239172,LOC106916517 coding downstream 214517 34868579 ~ 34892999 (+)
LOC120548589 NA coding downstream 220388 34874450 ~ 34874577 (+)
eno4 NA coding downstream 387866 35041928 ~ 35080823 (+)
kcnk18 NA coding downstream 624883 35278945 ~ 35295506 (+)
LOC120547565 NA non-coding upstream 28932 34598539 ~ 34604373 (+)
G198654 NA non-coding upstream 40216 34592597 ~ 34593089 (+)
G198635 NA non-coding upstream 137055 34495736 ~ 34496250 (+)
G198606 NA non-coding upstream 363989 34269002 ~ 34269316 (+)
G198603 NA non-coding upstream 433927 34198262 ~ 34199378 (+)
G198683 NA non-coding downstream 17856 34671918 ~ 34672166 (+)
G198696 NA non-coding downstream 59466 34713528 ~ 34713880 (+)
G198739 NA non-coding downstream 304015 34958077 ~ 34962980 (+)
G198756 NA non-coding downstream 375870 35029932 ~ 35030273 (+)
G198778 NA non-coding downstream 443457 35097519 ~ 35097847 (+)
si:ch211-51a6.2 LOC104924867,LOC103357113,LOC100694100 other upstream 625302 33981511 ~ 34008003 (+)
slc2a15a LOC103367959,LOC104935160,LOC103476520,LOC106961144,LOC103155793 other upstream 1433443 33157729 ~ 33199862 (+)
G198245 rab1a,LOC104962072,LOC102231865 other upstream 1668231 32962388 ~ 32965074 (+)
G198185 NA other upstream 1838644 32793288 ~ 32794661 (+)
G197999 NA other upstream 3398582 31234364 ~ 31234723 (+)
LOC120548523 NA other downstream 241121 34895183 ~ 34948460 (+)

Expression


Co-expression Network