LOC120547657


Basic Information

Item Value
gene id LOC120547657
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 30146823 ~ 30150716 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005637091.1
GAGGGCATTTTGAATTTTCTCACAACAGTCGTTGGAAATAACCGTCGCTTCGCGCTCTATCCGTTTTGGCCTGTGCTTCTTCGGTGAAACTTCGTCGTGTATTCAAGCTTTGTCGCTGATAAGCTAACTGACTGGCGGCTGTCTGAGCTGACAGAGAATTTTAGAGgcCATCCACAAACATAAAAGAGGCCCTGGCGCTATCATTGGTTCAGACATTCCCTGAATGATGGATCAGAAATTGGCTatTTCCAGAGACTCCAGAATGAAAACCAAGCTCTGAGGGAGGAGAACCACACCCTGAGGGAAAGCAATGCACGAGCAGCTTCGGATGACAGCGGCTCACTTCAAGAGCAGGTGAAGCAAGTTGGGACAATGTTGAAGACGTTTGCTTGCACTTGGCAATCAGGTGCAGATCAGACCCTAATGCTGCGACGTCTTGGAGAGTTTGGCGATGTTGTGCGTAGCATGGACAACAAAATGGAAACTATGCAGCAACATTTCAGTGCCAATGTGTCTGTTGGAGAGCCACTGATGAGGCGGTCCAGGTTAACGTTACGCGTTACCTGAAAGCATCTGACCGTGAAGGCGGAAAAAGGCGCCCCACAGCCGACCCCTTAAACCTAGGCTGACTACTGACACCCCCGCATCACTGACAACTGGAACACTTTCTTTATCCTGCAGTCAGTAACATCAAGAAGCCAGAAGTGCCAGACTACACTCACCCAATCCACACTATTCTCTGtggaaattattttttcttcttcttttttttttttttattccccatGACCCTGCCTTGAGGGCAGCGCCTTGGATGGATATGGGATGATGAGATTGTTTGTCCTTTATACAGGCGCACGAGGGATCACTGAAGATATGCCCATTTTGCGCTGCCTCATTCTGGAGATCCCGTAGTCAGGCTTGAAAGACTGATTATCATTA
>XR_005637092.1
GAGGGCATTTTGAATTTTCTCACAACAGTCGTTGGAAATAACCGTCGCTTCGCGCTCTATCCGTTTTGGCCTGTGCTTCTTCGGTGAAACTTCGTCGTGTATTCAAGtattttgaatggACAGCTTTGTCGCTGATAAGCTAACTGACTGGCGGCTGTCTGAGCTGACAGAGAATTTTAGAGgcCATCCACAAACATAAAAGAGGCCCTGGCGCTATCATTGGTTCAGACATTCCCTGAATGATGGATCAGAAATTGGCTatTTCCAGAGACTCCAGAATGAAAACCAAGCTCTGAGGGAGGAGAACCACACCCTGAGGGAAAGCAATGCACGAGCAGCTTCGGATGACAGCGGCTCACTTCAAGAGCAGGTGAAGCAAGTTGGGACAATGTTGAAGACGTTTGCTTGCACTTGGCAATCAGGTGCAGATCAGACCCTAATGCTGCGACGTCTTGGAGAGTTTGGCGATGTTGTGCGTAGCATGGACAACAAAATGGAAACTATGCAGCAACATTTCAGTGCCAATGTGTCTGTTGGAGAGCCACTGATGAGGCGGTCCAGGTTAACGTTACGCGTTACCTGAAAGCATCTGACCGTGAAGGCGGAAAAAGGCGCCCCACAGCCGACCCCTTAAACCTAGGCTGACTACTGACACCCCCGCATCACTGACAACTGGAACACTTTCTTTATCCTGCAGTCAGTAACATCAAGAAGCCAGAAGTGCCAGACTACACTCACCCAATCCACACTATTCTCTGtggaaattattttttcttcttcttttttttttttttattccccatGACCCTGCCTTGAGGGCAGCGCCTTGGATGGATATGGGATGATGAGATTGTTTGTCCTTTATACAGGCGCACGAGGGATCACTGAAGATATGCCCATTTTGCGCTGCCTCATTCTGGAGATCCCGTAGTCAGGCTTGAAAGACTGATTATCATTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005637091.1 False 942 lncRNA 0.48 6 30146823 30150716
XR_005637092.1 True 958 lncRNA 0.48 6 30146823 30150716

Neighbor

gene id symbol gene type direction distance location
cdt1 NA coding upstream 183733 29956720 ~ 29963090 (+)
pcca pcca coding upstream 448680 29659412 ~ 29698143 (+)
LOC120548236 LOC103357099,LOC103387711 coding upstream 491772 29646723 ~ 29655051 (+)
LOC120547721 LOC103357097 coding upstream 514062 29628731 ~ 29632761 (+)
LOC120547808 NA coding upstream 588488 29557263 ~ 29558335 (+)
nvl NA coding downstream 117072 30267788 ~ 30336160 (+)
sertad2b sertad2,LOC104932742 coding downstream 355338 30506054 ~ 30600609 (+)
slc1a4 slc1a4,LOC102791775 coding downstream 474914 30625630 ~ 30671184 (+)
LOC120548109 LOC102195401,LOC103353517,LOC102300597,LOC106939791 coding downstream 560857 30711573 ~ 31005023 (+)
ogfrl1 ogfrl1,LOC104917660,LOC103363704,LOC100701482 coding downstream 1032604 31183320 ~ 31198691 (+)
G197739 NA non-coding upstream 16600 30129885 ~ 30130223 (+)
G197695 NA non-coding upstream 80294 30064770 ~ 30066529 (+)
G197686 NA non-coding upstream 145892 29994581 ~ 30000931 (+)
G197679 NA non-coding upstream 168884 29969790 ~ 29977939 (+)
G197654 NA non-coding upstream 367772 29768476 ~ 29779051 (+)
G197761 NA non-coding downstream 18728 30169444 ~ 30169911 (+)
G197803 NA non-coding downstream 188060 30338776 ~ 30339212 (+)
G197804 NA non-coding downstream 190621 30341337 ~ 30344038 (+)
G197843 NA non-coding downstream 246351 30397067 ~ 30397289 (+)
G197845 NA non-coding downstream 261192 30411908 ~ 30412212 (+)
LOC120547718 LOC102789565,LOC100690068,LOC101471749,LOC103357097 other upstream 527807 29518941 ~ 29619016 (+)
G197531 NA other upstream 796895 29348425 ~ 29349928 (+)
LOC120548242 ccdc85a,LOC104955469,LOC102783086,LOC102310250,LOC102209339,LOC100696856 other upstream 969329 29112688 ~ 29177494 (+)
ccnj ccnj,LOC102785723 other upstream 1844490 28294205 ~ 28302333 (+)
LOC120548047 adgra1,LOC103360772 other upstream 2365782 27554928 ~ 27781041 (+)
LOC120547658 NA other downstream 2795 30153511 ~ 30201820 (+)
G197999 NA other downstream 1083648 31234364 ~ 31234723 (+)
G198185 NA other downstream 2642572 32793288 ~ 32794661 (+)
G198245 rab1a,LOC104962072,LOC102231865 other downstream 2811672 32962388 ~ 32965074 (+)
slc2a15a LOC103367959,LOC104935160,LOC103476520,LOC106961144,LOC103155793 other downstream 3007013 33157729 ~ 33199862 (+)

Expression


Co-expression Network