LOC120548055


Basic Information

Item Value
gene id LOC120548055
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 26106533 ~ 26111175 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005637134.1
TGCTGAAAGGTTTCAGGGTTCGTTTGGTTTCGATCGTTTTCTCAAATTGAGCTACTGACGCcgtttaaaagaaaacactgttacacacgtatgtcatgttcaagtccccatccCGACCACGCCCATCCCCCACTCTGGCCATGTGGCCAGTGTGTATACCGGAGTCCCCATGGtgtccagcccctcccctcacGTAAGCTGTGAACTCTGCGTCAGATCTTCACTGCATGGACGAGAGCAGGCTGGAGTCATGGATCAGGGAGAGATGGAAGAAGATTTGACAACCATTCATGGTCACCGTGACAGCCCTTTAAATTCTTCAGGAAATGGACCAGAGCTCTTCTGACTCTACAGTGATCCTTGAACTAAGTTCCGTCCCTGAAAAGGAGGACATAAGTGTTCCTGAACTCAAGAGAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005637134.1 True 418 lncRNA 0.50 3 26106533 26111175

Neighbor

gene id symbol gene type direction distance location
trnai-uau_2 NA coding upstream 123695 25982745 ~ 25982838 (+)
hcar1-3 NA coding upstream 126096 25977457 ~ 25980437 (+)
haao haao coding upstream 137017 25962355 ~ 25969516 (+)
xpo1b xpo1,LOC104925896,LOC103353500,LOC102296990,LOC103154927,LOC101480205,LOC106952069,LOC103477318 coding upstream 218459 25860831 ~ 25888074 (+)
ttl ttl coding upstream 328490 25769647 ~ 25778043 (+)
plekhh2 plekhh2 coding downstream 303349 26414524 ~ 26476727 (+)
si:ch73-105b23.6 LOC104955877 coding downstream 384333 26495508 ~ 26521577 (+)
calm2a calm1,LOC102778633,LOC102293206,LOC107396020 coding downstream 416608 26527783 ~ 26531726 (+)
mcfd2 mcfd2 coding downstream 508242 26619417 ~ 26622570 (+)
LOC120547700 plac9 coding downstream 647158 26758333 ~ 26767338 (+)
G196921 NA non-coding upstream 5511 26100492 ~ 26101022 (+)
LOC120547661 NA non-coding upstream 37077 26023920 ~ 26069456 (+)
G196898 NA non-coding upstream 113912 25990468 ~ 25992621 (+)
G196836 NA non-coding upstream 166574 25911761 ~ 25939959 (+)
G196841 pex13 non-coding upstream 198664 25904720 ~ 25907869 (+)
G196935 NA non-coding downstream 5926 26117101 ~ 26117640 (+)
LOC120548056 NA non-coding downstream 11716 26122891 ~ 26129531 (+)
G196967 NA non-coding downstream 179943 26291118 ~ 26311286 (+)
G197027 NA non-coding downstream 421857 26533032 ~ 26533234 (+)
G197029 NA non-coding downstream 428669 26539844 ~ 26540135 (+)
LOC120548053 LOC103353497,LOC102790632,LOC102299158,LOC102194143,LOC101482614,LOC100706574 other upstream 280104 25817251 ~ 25826429 (+)
zgc:110045 LOC102779765,LOC102305383,LOC100704767,LOC101482925,LOC102197868 other upstream 431627 25594496 ~ 25674906 (+)
prdx3 prdx3 other upstream 485858 25613407 ~ 25620675 (+)
LOC120548229 rab11fip2 other upstream 611028 25481831 ~ 25495505 (+)
cacul1 cacul1,LOC103374658,LOC102794354 other upstream 962279 25139047 ~ 25144254 (+)
stpg4 LOC103353520,LOC101467386,LOC102793681,LOC102299197 other downstream 424109 26535284 ~ 26548760 (+)
G197053 NA other downstream 551984 26663159 ~ 26663785 (+)
tmem254 NA other downstream 614541 26725716 ~ 26735787 (+)
pwwp2b pwwp2b other downstream 763040 26874215 ~ 26953805 (+)
LOC120547882 inpp5a other downstream 815243 26926418 ~ 27109140 (+)

Expression


Co-expression Network