LOC120548258


Basic Information

Item Value
gene id LOC120548258
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 32630314 ~ 32632849 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005637162.1
agagaatatagtagtatatgtgagagagtatagtagtgtatgtgagagagtatagtagtgtgtgtgagagagtttgatTGAAACGGAAGGGAGTTTGATTGAAACGGAAGGGAGTTTGATTACTCAGCTCCTGATTGGTTGACAAAGAAGAAGCGGTATTTGACGGTCAAATTCCGGCACTGTCATTATAATAGTTTGGCTGAAGTGGAGCTGTAATGGATAGAGAGAGGCTAACTGAAGCTGTGGGTcttctaaataataatttaggaAATGGTGAGCTATTGTCAACGATGCCAACTTCAGCGTCGTCAATTAAATTAAGTCCAACAGATTCTGATTCGGAGATGCAGAGATTATTCAGGGGTGGAACTGCAAATCCAGTCAGACCTGGCTCCAGgctagcactgctacttctagcTAGCTCAATGCAACACGGAGGACCCCGTTACCAGACGAGACAGCGTTTCGGTGGATCGTCGTCGAAATCCAGGAAGAGATTATCTGGCCAATGCTGGATGTCTAAGGCCTTTGAAACGCATAGAAGACAAAGATCTCTTGGTGGAGGATATCATCATGTTTCAGCTGGTTTATCGAGTTAGTGGAGCACTTTAAAGgTTCAGGGAGGGGATGAAGACCCTTGGTGTTCTTGATGCAATAAGAATGCACCCAGATGCTTTCAGACCGCTGTTTTGTCACGAGCCATCCCCACTCACAGCGGATGTTCTAGAACTGTCAGCAGTGGGCAGGAACAAAAGAAGGGCAGAGGAATGTGTGCATTTTGGAGGGACTACCTGCTGGATGTTGAGGGTAAGTATTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005637162.1 True 817 lncRNA 0.45 3 32630314 32632849

Neighbor

gene id symbol gene type direction distance location
fancl fancl coding upstream 146648 32445087 ~ 32483666 (+)
bcl11aa bcl11a,LOC103363701,LOC102779517 coding upstream 1056693 31512864 ~ 31573621 (+)
LOC120547952 rims1,LOC102777706,LOC102298248 coding upstream 1137094 31342959 ~ 31493220 (+)
ogfrl1 ogfrl1,LOC104917660,LOC103363704,LOC100701482 coding upstream 1431623 31183320 ~ 31198691 (+)
LOC120548109 LOC102195401,LOC103353517,LOC102300597,LOC106939791 coding upstream 1625291 30711573 ~ 31005023 (+)
LOC120547814 NA coding downstream 24137 32656986 ~ 32659866 (+)
LOC120547622 NA coding downstream 29238 32662087 ~ 32666672 (+)
LOC120547668 LOC106676435,LOC106674820 coding downstream 146667 32779516 ~ 32783434 (+)
fgf8a fgf8,LOC104933818,LOC106515330,LOC108239148 coding downstream 617939 33250788 ~ 33258175 (+)
fbxw4 NA coding downstream 646123 33278972 ~ 33355371 (+)
G198138 NA non-coding upstream 3803 32626173 ~ 32626511 (+)
G198134 NA non-coding upstream 17309 32612672 ~ 32613005 (+)
G198126 NA non-coding upstream 47035 32581720 ~ 32583279 (+)
G198102 NA non-coding upstream 183892 32445895 ~ 32446422 (+)
G198100 NA non-coding upstream 187575 32442532 ~ 32442739 (+)
G198147 NA non-coding downstream 7137 32639986 ~ 32640929 (+)
G198165 NA non-coding downstream 77932 32710781 ~ 32716315 (+)
G198215 NA non-coding downstream 283173 32916022 ~ 32916477 (+)
G198221 NA non-coding downstream 290833 32923682 ~ 32923902 (+)
G198257 NA non-coding downstream 388186 33021035 ~ 33021436 (+)
G197999 NA other upstream 1395591 31234364 ~ 31234723 (+)
LOC120547658 NA other upstream 2428494 30153511 ~ 30201820 (+)
LOC120547718 LOC102789565,LOC100690068,LOC101471749,LOC103357097 other upstream 3011298 29518941 ~ 29619016 (+)
G197531 NA other upstream 3280386 29348425 ~ 29349928 (+)
LOC120548242 ccdc85a,LOC104955469,LOC102783086,LOC102310250,LOC102209339,LOC100696856 other upstream 3452820 29112688 ~ 29177494 (+)
G198185 NA other downstream 160439 32793288 ~ 32794661 (+)
G198245 rab1a,LOC104962072,LOC102231865 other downstream 329539 32962388 ~ 32965074 (+)
slc2a15a LOC103367959,LOC104935160,LOC103476520,LOC106961144,LOC103155793 other downstream 524880 33157729 ~ 33199862 (+)
si:ch211-51a6.2 LOC104924867,LOC103357113,LOC100694100 other downstream 1348662 33981511 ~ 34008003 (+)
LOC120548523 NA other downstream 2262334 34895183 ~ 34948460 (+)

Expression


Co-expression Network