LOC120548378


Basic Information

Item Value
gene id LOC120548378
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 23870544 ~ 23874163 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005637176.1
TTTGTTGTTTTACACCTACCTAGTTTTGACCCAATTTTTGTATTTTGCCTCAGCCTGACCCCTTTGGACTGTTGCCTGCCTGGATTTTTACATCTTTATTAAGTAAAGACTCCTTACTTTAAGGTTCCtttgtctctgaattgtaacgGAGGCAAAGGAAGAGTAataattcaaaaataaaaattgcatTAACAACACAGTTTGAGAAGCTGGAGAGTCATTTTAAGTCTCGAGTTGATGGAGAGCCGACCCATTCTGCAACAGTTGGCAACTGCTCTGGAGTTTCTGAAGAGCATACGATTCCTTAATGCAGCTCTTAAGCCTGATAACTTCATGATGGTGGACCATTAACGGCAGCCATTGAGAGTTAAAGTCATCGACTTTGGCTTAGCGTGCAACAATTCTGAGCTATGGACAGGTGCCACTCTTCCAGATGGTACAGgtcccatggtggtccaccggaaggggagggacttcccCTCTATAGACACTTCCTCAGTTTTAAACCTGTCGGCATGCGGGCGTGACGCTGATGTGACGTTTGCGGTCAAGACGGCGCATATTAGGCACTGCATTGTTCCCTGGCTGTGATGAATATGATGttggcagttgtcgtttcaggaaatgGAGTGCGtcctgcctcctccccttctaccACCGGTGGTCACGCCCTCTGACTCGGGTATTGTTTGCGCTTGGCTGTCGATGGTTCCTCTGCT
>XR_005637177.1
TTTGTTGTTTTACACCTACCTAGTTTTGACCCAATTTTTGTATTTTGCCTCAGCCTGACCCCTTTGGACTGTTGCCTGCCTGGATTTTTACATCTTTATTAAGTAAAGACTCCTTACTTTAAGGTTCCtttgtctctgaattgtaacgGAGGCAAAGGAAGAGTAataattcaaaaataaaaattgcatTAACAACACAGTTTGAGAAGCTGGAGAGTCATTTTAAGTCTCGAGTTGATGGAGAGCCGACCCATTCTGCAACAGTTGGCAACTGCTCTGGAGTTTCTGAAGAGCATACGATTCCTTAATGCAGCTCTTAAGCCTGATAACTTCATGATGGTGGACCATTAACGGCAGCCATTGAGAGTTAAAGTCATCGACTTTGGCTTAGCGTGCAACAATTCTGAGCTATGGACAGGTGCCACTCTTCCAGATGGTACAGgtcccatggtggtccaccggaaggggagggacttcccCTCTATAGACACTTCCTCAGTTTTAAACCTGTCGGCATGCGGGCGTGACGCTGATGTGACGTTTGCGGTCAAGACGGCGCATATTAGGCACTGCATTGTTCCCTGGCTGTGATGAATATGATGggGTCTCGTAAACTCCCAGGAGAAGATGCAAGTGCTGATGAATGTAACCGGGCGAGCTTTGTCGACAGCTACTGGCCGTGGTTTGGGAAGAATTACGCCAAGCCAAATTCCTCAGCATCCATTCATTACAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005637176.1 False 719 lncRNA 0.47 4 23870544 23873751
XR_005637177.1 True 734 lncRNA 0.46 4 23870544 23874163

Neighbor

gene id symbol gene type direction distance location
npas4l LOC101471891 coding upstream 9677 23855715 ~ 23860867 (+)
ntpcr ntpcr,LOC103137650 coding upstream 100124 23766603 ~ 23770420 (+)
map10 NA coding upstream 105162 23762408 ~ 23765382 (+)
tsnax tsnax coding upstream 312701 23549140 ~ 23557843 (+)
gpr137ba gpr137b,LOC104924458,LOC103372484 coding upstream 376377 23488234 ~ 23494167 (+)
zmp:0000000755 LOC100695905,LOC101469954,LOC102307746,LOC103371009 coding downstream 188592 24062755 ~ 24122075 (+)
klc1b klc4,LOC102306811 coding downstream 256621 24130784 ~ 24160603 (+)
ptk7b ptk7 coding downstream 337809 24211972 ~ 24245841 (+)
srfb srf coding downstream 374035 24248198 ~ 24268024 (+)
ablim1a ablim1,LOC102784938,LOC102304155 coding downstream 410483 24284646 ~ 24329241 (+)
G196195 NA non-coding upstream 326706 23543607 ~ 23543838 (+)
G196184 NA non-coding upstream 337485 23497168 ~ 23533059 (+)
G196174 NA non-coding upstream 400100 23467294 ~ 23470444 (+)
G196140 NA non-coding upstream 516203 23353972 ~ 23354341 (+)
G196124 NA non-coding upstream 609489 23258136 ~ 23261055 (+)
G196328 NA non-coding downstream 177026 24051189 ~ 24124149 (+)
G196336 NA non-coding downstream 286450 24160613 ~ 24162215 (+)
G196337 NA non-coding downstream 290037 24164200 ~ 24164631 (+)
G196332 NA non-coding downstream 394110 24268273 ~ 24270052 (+)
G196454 NA non-coding downstream 765251 24639414 ~ 24639857 (+)
klhdc3 klhdc3 other upstream 18939 23818914 ~ 23851605 (+)
disc1 disc1 other upstream 259207 23562283 ~ 23611337 (+)
tasp1 tasp1 other upstream 1177940 22647914 ~ 22692604 (+)
kif16bb NA other upstream 1686052 22155402 ~ 22184492 (+)
G195653 LOC102296834 other upstream 2355416 21514526 ~ 21515128 (+)
LOC120547848 LOC103369904,LOC106907288,LOC107081732 other downstream 483763 24357926 ~ 24367599 (+)
LOC120548495 ate1 other downstream 493791 24367954 ~ 24426502 (+)
G196439 wdr11 other downstream 690387 24564550 ~ 24569167 (+)
dact2 dact2,LOC103391347 other downstream 1134311 25008474 ~ 25013249 (+)
cacul1 cacul1,LOC103374658,LOC102794354 other downstream 1264884 25139047 ~ 25144254 (+)

Expression


Co-expression Network