LOC120548551


Basic Information

Item Value
gene id LOC120548551
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 19358047 ~ 19361216 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005637190.1
accagaaggaaatggaaaatacatgcatccggtggaatttcctgcagcaccggcgcaatcccggaagtggaacgtcaaggatatagactactgctacaagtaatgtgtttgtgtctgaacaaCCAGCCTAGCTAACCAATCAGTGTCGGGTGAgaagctactggcagctacaggcggggtttaggtgtgacggtGGTTCAAAACAACGGCggacgtgatagacagatggttgattcaatcacctgccaggtatttagTGAAAGTGTTCCAAACTGTTTacaatgacggcttctcagatggttctgtgtaacataCCATCAGGTTAGTTTGGGTCTTCTTCTCAGAGAAAAAATTATGATGTATGATATAGCCCAGCTCTCTCCTAAAAATTACATTCCACACAACTAAACTAAACTGCATTTTCAATTATGTTTTAAGGAAGCGTAATTTAACCTGGATTCCGTTTGTTTGTTTCATATCACTAATACGTTTCTAATCAAATCCTCGTAGGGAGGGGGTCAGGTGGATGGGGATGGCTCAAACAAACTCGGGACTCGGGAGGTTTGTGTCCTGTCTGGAACCGTAAGTCAACTTTGACGTACTTAACTTACGTCACCATTGTAACATACTTAACTTACATATGCAGCTTAAGTTACCTAACAAATTACTTGAACCCAAACaatgatctttttctaaacctaaccaagtagttttgttgtaaTTCGTGACTTTAACCACGTGTTTAAAAGAATGACCGTATGTTTACACTGTAAACCGGGATACTTTAACACCTAACAAGCTCTTCTTGCATTAAAGCTCCTGTCCTCCAGAGAGTGTCTGGATCACAGCAAAAGATCTGGCACTCAAGTTTCAGACTTTCCAGGACAGCAATATTGGGATGTTTGTATCCGTGGCAACGAGTAATCAGATTTCACtactttatttttgtcttttcccCCATGCTCTtggaaacacacaacacacttagCATCAAAGTACATCATAAGTGTGTAGTCAAATTGACACTCCATAACTCTGTTTCTCACAACATGACAGACTTtataaaagtactgcagtatgAGGGGTTGTGGAGAATGTAATTTATTGTTTCTTCTGCTGTAGTGCTCTCAGCCTCAGAGTTTCACGCTGCTCTCTCCTGTTTATCAGATCTACTTTGACTTTCAAGTTTTTGTCAACATTTTCACCTCTCTTTCATTCTAGTTTGGCTGTAGTAACGGTTTCTTCTGTGgacaatattaaaatgttatcatTTGACTTTATAATTCTCACTTTATTTCAGCTATTTTCTACAGATTAAATCAACATGACTCATCAGCACATAAGCGGAAGACCATGCATTTAAAACAAAGGCTATAAGAAGGACACATTCGTCTTGTTGCCCTTGGAGACTGTGGAAATGTTCACAGcaaagacaaaaaagacaaTTGTGTCAATCAACTCAATTATTGTACACATCCATAATCATTTTTAACTACCAACCAAGGTTgacattgtacttttttttataagacTTGGATCAGTCAGTGTTTTATGAACAAGCCTTAAAtgactgaaaataaaatggttacttgtcataaaaaaaagaaggtaaatTATTCATACAGCATTTTCTGACTTGTATATTTTACATCATGGTAACAACCACGTGGTCATAATTAGGAGAGTGaatcttgtgtttttctttaagttgcacttaaataaaacaaaatggtcTAAAGAACAATCAAATCTGCGGTCAGCAACAATCTGTAATTTAGGGTAACTAAATGGTAATTTATTGACCATGCTCACATGTATTTTACTCCCACTTGACGTCATACAATGATCACTCAATGCTAAATAACTACTAATTTATCATTCAACACATTATTAgtaatttaaacaatgtttttttctttagtatGTGTTATCTAGTTATCTACTATCCCCACTATATATAATGAAGTCCCCCTTTCtgtatttgtgcatgtgtgtttgattCAATATAAGCCTTGTTTTGGGACCCGAATAATTCAAATACTCTATCCAATGAAGGCTAAAGATCACAACATATAACATCATTTGACATGTACTGACATCAGTGTACCCTgaggtttaaataaatgtaaaaatgatgaAATAACATGTTGTATTTCAAGCTTGATATGAGACGCAGCAGGGGTTGTGGATTTATGTGAACTTTGATTACTGGTCTCATCTGTCTCTGGGGCACAGAGAGTCAGACTCAGGAAGGTCAAAAAGAAGCCCCGAGCCCCAATCCTCCACCAGCGGAGTCAGCCTGACATCCACTTTGCTCCCTTGTGATGTATGTACAAGAGAGCTGAATCTCTGAAGACTCGACAACAACCAAACTAATAGAGCTGAGATCAGTTGGTTTGAAGTACTCAGATCTCAAGCTTCCTCTCAGCTGTGCCAGTCAGCTGCCATTACAAGCATGACGGATGGGCAACGATCAATAACCTGCTCCTCCAATCTGTGAGAAAATCTGAGTAGGCAAGCCAGAACAACAACCCAAGGAGATCATTTCTTGGATGGCCTCGAAGCAGAAACCCTTTGAGAACatgatttttaaaattttatttcagaacattaaaaaataattatactgAATTGATAGTGTGCAAGGTTTTTGTAATTGTCCCTAAAATATGTTTTAGCGTTCATAAAAGAAAAGGTTTAACTGTACAAGAATGACCAATTTTTTGACCAaaaagaaaactgtcaaaacGGTTTCATCCTTGAATACAGACATCATTGTTTGTTACTGAAAGAACTCCTGAATATGTATGTTGTCTGCAGTAGGCAACCTAACATCCCACATGGCATTGCAtttaaaccatagactgtatgatTTAAACcttgttgtatttgtgtttgttgtccTCTTTGTGGATGGAGGATGTTTTTGTGTTGATAGTGTTTGAACAGAAAGCACAGCAGCCAAACGGAACATTTCCCTTGTGGAGTGTGAGGACCCATGTGGTGCTTATAGTCTTTCATTTGTGTGGGTGCTTGGTCAGACAGTCTCTGTAATGCACTGGAACAATAAATGGCTTAGGCTGC

Function

GO: NA

KEGG:

id description
ko05410 Hypertrophic cardiomyopathy

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005637190.1 True 3084 lncRNA 0.38 2 19358047 19361216

Neighbor

gene id symbol gene type direction distance location
LOC120548542 NA coding upstream 1304 19328042 ~ 19356743 (+)
lrrc1 lrrc1 coding upstream 31873 19298882 ~ 19326174 (+)
eloal LOC102784945 coding upstream 61815 19290151 ~ 19296232 (+)
fbxo9 fbxo9 coding upstream 111475 19238443 ~ 19246572 (+)
agpat5 agpat5 coding upstream 147282 19201585 ~ 19210765 (+)
fam83b NA coding downstream 15871 19377087 ~ 19383769 (+)
hcrtr2 hcrtr2,LOC102199474 coding downstream 37178 19398394 ~ 19426204 (+)
znf451 NA coding downstream 266320 19627536 ~ 19636409 (+)
bag2 bag2 coding downstream 276235 19637451 ~ 19640156 (+)
prim2 prim2,LOC102784181 coding downstream 285465 19646681 ~ 19671717 (+)
G195115 gclc non-coding upstream 82825 19272600 ~ 19275222 (+)
G195087 NA non-coding upstream 139005 19218736 ~ 19219042 (+)
G195086 NA non-coding upstream 139629 19216483 ~ 19218418 (+)
G195048 NA non-coding upstream 146166 19165731 ~ 19211881 (+)
G195043 NA non-coding upstream 212942 19144760 ~ 19145105 (+)
G195285 NA non-coding downstream 406858 19768074 ~ 19768317 (+)
G195361 lmbrd1 non-coding downstream 815304 20176520 ~ 20177637 (+)
G195511 NA non-coding downstream 1284094 20645310 ~ 20658889 (+)
G195520 NA non-coding downstream 1408678 20769894 ~ 20770215 (+)
G195565 NA non-coding downstream 1904069 21265285 ~ 21265663 (+)
zgc:163080 tmem14a other upstream 141624 19212832 ~ 19216423 (+)
mcph1 mcph1,LOC102776803 other upstream 158042 19167986 ~ 19200005 (+)
G195036 LOC103369008,LOC106520712 other upstream 226106 19126220 ~ 19131941 (+)
G194908 NA other upstream 507144 18844430 ~ 18850903 (+)
prdm8 LOC104947267,LOC103357713 other upstream 673710 18680957 ~ 18684337 (+)
gfral NA other downstream 65259 19426475 ~ 19430096 (+)
adgrb3 adgrb3 other downstream 680558 20041774 ~ 20156948 (+)
G195448 thbs2 other downstream 1168551 20529767 ~ 20530315 (+)
G195518 NA other downstream 1391557 20752773 ~ 20753809 (+)
fbxo11a fbxo11,LOC104951339 other downstream 1957394 21318610 ~ 21332577 (+)

Expression


Co-expression Network