LOC120548567


Basic Information

Item Value
gene id LOC120548567
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 28409470 ~ 28411483 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005637196.1
cAGCGCTGAAGCCGCTTGGTTGCTCCCGGTCGACGGGCTCTCCGACTCCGATGAAGAAGTGAGCTCCGATGACGGGGTCGGGGTGGAGGGAGGAGGGTCTACTTGCGTCGGATCTTGCTGTTGGAGATCATACACCGGGCTCGCTGGGCTGCATCTGATGAACTGGGACAACTCCGACAAGGATATGATGTTAGAGGGACCTGGCAACTGCAAAGCGAATGCGTTATCACACGTTaagccaaaaagaaaaaaggaaaacacactTCCCAAAACTATAGGCTACCAGAATAAATCATAAATCCCACAAATTTTCCTGGGAGCATATGGCTGCAGATATTCACCAGATTTCGCCAcgtctcgtttttttttttcttctccttccaCGCAGGAACTCCGGAGCTGCAATGTGAAACTgattcagtgtgtgttttttgccaTGAAGGCAGGGACCTCCCCTAGCCTATATTCATTTACATACGTCAGTAAATACAGCTGTCCTTCAACAAGGCTAAAAGACAGGTCTACCTTGATGCAGGCACTTCGACACACGCGAAcacagaggagggggggggggtttaaacTAAAATGACTTCCACCAAATGGCACACTTCGTTCTTTTTATGCAGTGGAAAGTGACGCACCTGAAGCGCGTTATTATACCGCAAAGATCTCTCATGTATACCGGCAAACCTTTTCcttacaataaaacaaatatgtCTTATAATATAGGCATATATTTAAGCACAATGTAGGCTATAAAACTAAGATAATTAAATATAGGTCATACGATAAAGTTGACTGGGCAAATGAGTATAAAATATTCAACATAAAAGTCTATATGATTAGGGATTTTATTATAGCGCAAAGAGGGACTCGGCCCGAGGTCCGCATTGACACAGGTTGGCATTGACAGAATACAAGATGTTCCCATGTGGGCTATACTTGCATTTGAATAACTTAAAGCCAAGGCTGGAACATCACTGAAAGCTCGTGTTCTCTATTCAAAGTTAGACACTGTATATTATACCTTTCATGCAAAATTCTCCCTTACTTTGCATTTCAGAGACAACGCCTTGCAAAAGCCCAATTAACATTTGAGCACACCCTCGAATTTTATCAAGACAGAGAATTGCATTCAGAAAGCTACACGGTTGCCACGTTATTAAATTCAGTAGTGAGCAGGacaatctaaaatgtaaataaagcacaaTATGTTTGATCATTGCGAGGCTTACACTGAGCAATTGAGCATTTTCGGTCAGCTGGGGCACATGCAACGCGCAATCACACAGTGTCGAATAATCTAACGttacaattaaattaaaataacattGATAAGGCTCCTCTTGACTGTCGGAACCTGACTGCAGGACGAGCTAGAACATGCAGCCAAGGCCATTCAATAACATGACTGCGATAGTCTGTAGACTTTGAAAATAACACTCCAGATGACATGGCGGATCATTTTAGCAGTATGATGGCAGTGACACAAGTGGGTCTTTCGAGATAATCGCAATAGCCAGCGTTGTAGGCTACACACCCCACCAGTTAATCCGTGTTTTTCTCCTCCAAGAGCTGCGCTTCCAAGGTCATCAGAGCAGCACAATCAGCAGCCTTCAGTAGCTCACCTCACCGGCCCTTCACCACAGACACTGCCCAAATCAAAAGCCTATTTATCGCGCCGATCGGATGCCTCATCTGGTACATTTCATGAAGCTGTCTTGCCTTGAAATCCCCCCTTTAATCCATGTGTCCCCCTTTAACACACAAACGACAacacagcatgcacacacagcgtGGTCGCTTCTCTGCCTTGACGTGAAGCGTAATATTACCTTTATCGTTCACCTTTTTGGGACTCTgtaaataaagatatttctgttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005637196.1 True 1884 lncRNA 0.44 2 28409470 28411483

Neighbor

gene id symbol gene type direction distance location
btaf1 btaf1 coding upstream 58483 28320747 ~ 28350987 (+)
blnk NA coding upstream 133471 28231795 ~ 28275999 (+)
vent NA coding upstream 509266 27891450 ~ 27900204 (+)
vox NA coding upstream 521861 27886243 ~ 27887609 (+)
LOC120548504 kndc1 coding upstream 530902 27808304 ~ 27878568 (+)
march5 march5 coding downstream 783 28412266 ~ 28447794 (+)
LOC120547570 kmo coding downstream 76040 28487523 ~ 28508440 (+)
LOC120547955 rmdn2 coding downstream 223845 28635328 ~ 28686068 (+)
LOC120547521 nanp coding downstream 352914 28764397 ~ 28770079 (+)
LOC120548038 tuba1c,LOC108255233,LOC103148207,LOC108247626,LOC106920718,LOC101079871,LOC101066234 coding downstream 375563 28787046 ~ 28789905 (+)
G197270 NA non-coding upstream 157918 28250758 ~ 28251552 (+)
G197237 NA non-coding upstream 403311 28004577 ~ 28006159 (+)
G197158 NA non-coding upstream 1039539 27369236 ~ 27369931 (+)
G197146 NA non-coding upstream 1108102 27300110 ~ 27301368 (+)
G197143 NA non-coding upstream 1109476 27299168 ~ 27299994 (+)
G197287 NA non-coding downstream 38097 28449580 ~ 28452009 (+)
G197299 ide,LOC104941703,LOC102291663 non-coding downstream 53663 28465146 ~ 28474917 (+)
G197378 NA non-coding downstream 97495 28508978 ~ 28510477 (+)
G197409 NA non-coding downstream 295400 28706883 ~ 28707205 (+)
G197439 NA non-coding downstream 455819 28867302 ~ 28867503 (+)
ccnj ccnj,LOC102785723 other upstream 107137 28294205 ~ 28302333 (+)
LOC120548047 adgra1,LOC103360772 other upstream 628429 27554928 ~ 27781041 (+)
LOC120548261 LOC102312438,LOC102207415,LOC101470427 other upstream 897878 27451950 ~ 27511592 (+)
LOC120547882 inpp5a other upstream 1300330 26926418 ~ 27109140 (+)
pwwp2b pwwp2b other upstream 1455665 26874215 ~ 26953805 (+)
LOC120548242 ccdc85a,LOC104955469,LOC102783086,LOC102310250,LOC102209339,LOC100696856 other downstream 701205 29112688 ~ 29177494 (+)
G197531 NA other downstream 936942 29348425 ~ 29349928 (+)
LOC120547718 LOC102789565,LOC100690068,LOC101471749,LOC103357097 other downstream 1107458 29518941 ~ 29619016 (+)
LOC120547658 NA other downstream 1742028 30153511 ~ 30201820 (+)
G197999 NA other downstream 2822881 31234364 ~ 31234723 (+)

Expression


Co-expression Network