XLOC_004957 (gpx9)


Basic Information

Item Value
gene id XLOC_004957
gene name gpx9
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 45676667 ~ 45688953 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009708
attttgtcctCTGTGTACTGTATGCTACATTTTTGTAGCTGCCATTAATCTCTACAGAATGTCCGGCAAATCTGTTAGCCTTATTAAATTATGTTTGAGTAAGATATCGACCACATGAACAAATACTATAGTGTTAGTAATTTGATAGTGATTTGAGTTGTAATACCACAACTAATGCAACCAAATTACCCAATATTGTACTTATAATACAGCTATACATTATACTAatatacaccacagtttactgtagtaaaagtaTACTATTTATTACAGTTGATCAGTTCACAAATATTATAGTATGATGTATATTCTATGTGTAAAGTGAAAGGTTGCATAATATACTTTAAAGTTGATTAGTAGATGAAATTGTGCTagttaacaagcaaaaaaaaaagtaaataaatcaaacattctGTTGACGGATGACGCAGTTACCTGTCCATTGAAATGAGGACAGTCACATGACTGTCAGGATCAGCGAGGCTTTACAAACctgcaacaaaaaaacaaaaaactaatctaAAGAAGAGCATGTCAGAAACAATGGAGTCAGTGATGCAGAAGCTCTGCTGAGCCAGAGATACAGAGCAGTGAATGAAACGCAGCTGAGAGACACTGGTTACTGCATACAGCCGCTCTgatacacacagacactcacaatCTACAGCTAATATGGCTGCAAATTCAGTGTATGATTTCACTGTGGAGACCCTGGAGGAAAAAAGCGTCTCGCTCGACATCTTCAGAGGAAAAGTTCTGCTCATCATGAACGTGGCCACCTTCTGAGGGTCCACCATTGAAGAGTATCACAGGATGAATGCACTCATGGACATGTATGGAGGACAGCGCTTCACTGTACTTGGTTTCCCCTGCAATCAGTTTGGACTTCAGTCTCCTGAGGAGAACCATGAAACCCTGAATGTTCTGCAGCATGTGAGACCAGGATCTGGTTTCCTTCCAAAGTTCCCCATTTTCAGCAGGATTGAGGTGAACGGCTCTGATGAAGATCCTCTGTACGCTTACCTGAAGGAAAGTCTTCCGTTTGTCAATCCTGTCATTGGAGACATCAGGAAACTCTACTGGTCTCCCATTAAAGCCAATGATGTCCGCTGGAACTTTGAGAAGTTTCTCATCACCGCAGACGGACGTCCTTACAAACGGTATGATCGTAATTGTCCGTTTGAAGATGTGGAGCGGGACGTTTCTGCACTTCTGCAGGGAAGACATGcattataaaacataatatTGACGATCCCTCAGGAAACTCCGTCCGGCAGCTGAGAGGATCTGATGGGGACGAGTGGATCTGATCTTCAGTGCATTCAGTCAGATCTGCAGACCCGAGACGcccaagaaacacacacacactgcacaacaCTGATCATGTTTCCCACAATAAAGAGCATTCTGCACTACAACACATGTACTCCTATTTATTTACATGCTGATCAATGTTCAATAATATTAAACACAAGCTTTAAAAAACAACTGAAACTAAAACCTAGTTTGTTTGAATTTGATGTATCTTCACCTTTTATCTGATGTATCGCAATAtttctaacattaaaaaaatgtaaataaaaaatactatttattttcaaAGAGTCATGATaacccccactttcggttcaggtctacctcagaattattttcaaaagatgcatcataatgggcgtggagctctgtaagcaaagggcaggagtgggcgtggccagcaggggagaaggaggggagtgaacaactgttgtcagttagcgtgaggagatgcatgattttatag
>TCONS_00009709
ATACAGCCGCTCTgatacacacagacactcacaatCTACAGCTAATATGGCTGCAAATTCAGTGTATGATTTCACTGTGGAGACCCTGGAGGAAAAAAGCGTCTCGCTCGACATCTTCAGAGGAAAAGTTCTGCTCATCATGAACGTGGCCACCTTCTGAGGGTCCACCATTGAAGAGTATCACAGGATGAATGCACTCATGGACATGTATGGAGGACAGCGCTTCACTGTACTTGGTTTCCCCTGCAATCAGTTTGGACTTCAGTCTCCTGAGGAGAACCATGAAACCCTGAATGTTCTGCAGCATGTGAGACCAGGATCTGGTTTCCTTCCAAAGTTCCCCATTTTCAGCAGGATTGAGGTGAACGGCTCTGATGAAGATCCTCTGTACGCTTACCTGAAGGAAAGTCTTCCGTTTGTCAATCCTGTCATTGGAGACATCAGGAAACTCTACTGGTCTCCCATTAAAGCCAATGATGTCCGCTGGAACTTTGAGAAGTTTCTCATCACCGCAGACGGACGTCCTTACAAACGGTATGATCGTAATTGTCCGTTTGAAGATGTGGAGCGGGACGTTTCTGCACTTCTGCAGGGAAGACATGcattataaaacataatatgtaGTGTATCCATAATTACCTTTATGAGGATGATTCCAGCTCGGATTCATTCAGATTAAATAACTTTCACTTTGCTTAATCCTTGCAGACCAGATCCATACATACCAGGCAGGAAAATGGCCAAAacattattgaattatatgaattatattatacATCTAGTAAAACGAAAtgctttattaataaaaaaaatagataatgaataagaaaaaaataggtacattatcacaaaatacttaaaaaatagttATATTGAAATGTATTATATTGAGATCTGATTAACAGAATTTAATTGtcatgaaaataaatacaaaaaatctcAAGGGTCCTGAaaggcaaatttatttatttatttatttatttatttatttatttatttatttatttatttatttatttatttatttatttacttatttattattaactatttattattatattattatttcatactTCATAACATTATACTGTATATCCAGTATATCCAGCTGTCTGATTGTTTGTATTCATTCAAATTAAatgaccttttttattttcatttcatccttttttgttttcatttcatctatttatttaattatttatttattctgtagttatttattttatttatttaattattcatttgattatttattaataattatttattattatagtattatttcaTACTTCATAACATTATACTGTATATCCAATATATCCAGCTGtctgattcatttaaattaaatgagcttctttttttattttcatttaattcattttcattttattttacacaatcaagcatatgttttacatattttagaTCCATTCAGACCCATTGAAACacgattaaaatttttttataaatatgttgaaaaatatatatctatgAATTGAAGTCATAGGAAAAGATCTAGGAATagggaa
>TCONS_00009710
ATACAGCCGCTCTgatacacacagacactcacaatCTACAGCTAATATGGCTGCAAATTCAGTGTATGATTTCACTGTGGAGACCCTGGAGGAAAAAAGCGTCTCGCTCGACATCTTCAGAGGAAAAGTTCTGCTCATCATGAACGTGGCCACCTTCTGAGGGTCCACCATTGAAGAGTATCACAGGATGAATGCACTCATGGACATGTATGGAGGACAGCGCTTCACTGTACTTGGTTTCCCCTGCAATCAGTTTGGACTTCAGTCTCCTGAGGAGAACCATGAAACCCTGAATGTTCTGCAGCATGTGAGACCAGGATCTGGTTTCCTTCCAAAGTTCCCCATTTTCAGCAGGATTGAGGTGAACGGCTCTGATGAAGATCCTCTGTACGCTTACCTGAAGGAAAGTCTTCCGTTTGTCAATCCTGTCATTGGAGACATCAGGAAACTCTACTGGTCTCCCATTAAAGCCAATGATGTCCGCTGGAACTTTGAGAAGTTTCTCATCACCGCAGACGGACGTCCTTACAAACGTGACGATCCCTCAGGAAACTCCGTCCGGCAGCTGAGAGGATCTGATGGGGACGAGTGGATCTGATCTTCAGTGCATTCAGTCAGATCTGCAGACCCGAGACGcccaagaaacacacacacactgcacaacaCTGATCATGTTTCCCACAATAAAGAGCATTCTGCACTACAACACA

Function

symbol description
gpx9 Predicted to enable glutathione peroxidase activity. Predicted to act upstream of or within response to oxidative stress. Orthologous to human GPX5 (glutathione peroxidase 5) and GPX6 (glutathione peroxidase 6).

GO:

id name namespace
GO:0006979 response to oxidative stress biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function
GO:0004601 peroxidase activity molecular_function
GO:0004602 glutathione peroxidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-130603-13 Predicted to enable glutathione peroxidase activity. Predicted to act upstream of or within response to oxidative stress. Orthologous to human GPX5 (glutathione peroxidase 5) and GPX6 (glutathione peroxidase 6).

Ensembl:

ensembl_id ENSDARG00000003077

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009708 False 1780 mRNA 0.40 6 45676667 45688953
TCONS_00009709 False 1535 mRNA 0.31 5 45677293 45687087
TCONS_00009710 True 710 mRNA 0.48 5 45677293 45688595

Neighbor

gene id symbol gene type direction distance location
XLOC_004956 NA coding upstream 307977 45364674 ~ 45368690 (+)
XLOC_004955 mrpl38 coding upstream 419456 45238292 ~ 45257211 (+)
XLOC_004954 wbp2 coding upstream 458189 45200744 ~ 45218478 (+)
XLOC_004953 dhx32a coding upstream 487559 45150709 ~ 45189108 (+)
XLOC_004952 ADAM12 coding upstream 556495 45060789 ~ 45120172 (+)
XLOC_004958 NA coding downstream 1859 45690812 ~ 45699982 (+)
XLOC_004959 NA coding downstream 18238 45707191 ~ 45728541 (+)
XLOC_004960 NA coding downstream 194836 45883789 ~ 46144106 (+)
XLOC_004961 FO904966.2 coding downstream 357315 46046268 ~ 46063763 (+)
XLOC_004962 NA coding downstream 389694 46078647 ~ 46102420 (+)
XLOC_004951 CABZ01052809.1 non-coding upstream 1049660 44626890 ~ 44627007 (+)
XLOC_004949 NA non-coding upstream 1984820 43688204 ~ 43691847 (+)
XLOC_004947 NA non-coding upstream 2201127 43376486 ~ 43475540 (+)
XLOC_004946 NA non-coding upstream 2525546 43107741 ~ 43151121 (+)

Expression


Co-expression Network