XLOC_004960


Basic Information

Item Value
gene id XLOC_004960
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 45883789 ~ 46144106 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011026
ATAACATGTCTACAGCTTAAAGAAAAACAATTTATCAGTTTTATACGTTTGTccaaaaattaaggaaaaaattaaGGTGGTGCTTGATTTAGTTTTTTGGGAACCCATTGGATTCTTGAAAGGGCGTTGCTAATTGACTAATGGAAAAATTCAAGGCTGAAACGAAGTCAAGAGCAATTATGGCTCCGCCCTTAAATTCCCTGAGCAGGAAGCGAAGAATGTTATTTCGAGGGGAAGGAAAGGTTGTGATGTTTGATTAAAGTTTATGAGGTCACATGTAACTAATTTTACACAATTGCTAAGTGATTCATCGTTTAAAACAATAACTACTGTATGataaaagtacattttgatttcatggcgACTTAAAAATACCAGAATCACAAGTATACTTCGATTTAGACTTATTACACGCAGGCCTGTTGTGTGAGTCTAACCGGCCCAATATGGCTGCCGGAGGGACGGCTCTCAGGCGCAATCAGTCCATCACGAGTAATTAACTGCCCCCTCCATCGGCGTGATGCGCCGGGCTCATCCATCCTGTGACACGGAGACCACGGAGAAAACGAGCTCTCGTTCATCATTCCTCCCTCACTCCCgactcacacaaacaaacaaataaacacataaacagcCCATTACGACGAGTCTCAGGCCTGGACGCACGCGCGCACACGGGTCTCACCTGTGCCAGGTAAACATCTGCCAGGCTCCCGGCAGGCGCTGCTCTGGGTGAGGCGTGGCGTGCTCGGCTTGTGTGGCGCTACTGCAGGTGGGCACCGGCGGGCCACAGGGACTGATAGAGTTATTAACAGGTGATGTGCTGGACAAAGTCCATCTGACCCCACAGAGCCTTAAATACATCACTGTCCAGCCGGGACCTCCAGAGACGATGCCTGGCTTTGTGTGTCGGATCTCAGAGAGTGATGACTTGATGGGGAAATGGTGGAAGTTATCTTGCTTTCGTAGTTTCTGTGCTTTTTCAG
>TCONS_00011027
CAGGAAGCGAAGAATGTTATTTCGAGGGGAAGGAAAGGTTGTGATGTTTGATTAAAGTTTATGAGGTCACATGTAACTAATTTTACACAATTGCTAAGTGATTCATCGTTTAAAACAATAACTACTGTATGataaaagtacattttgatttcatggcgACTTAAAAATACCAGAATCACAAGTATACTTCGATTTAGACTTATTACACGCAGGCCTGTTGTGTGAGTCTAACCGGCCCAATATGGCTGCCGGAGGGACGGCTCTCAGGCGCAATCAGTCCATCACGAGTAATTAACTGCCCCCTCCATCGGCGTGATGCGCCGGGCTCATCCATCCTGTGACACGGAGACCACGGAGAAAACGAGCTCTCGTTCATCATTCCTCCCTCACTCCCgactcacacaaacaaacaaataaacacataaacagcCCATTACGACGAGTCTCAGGCCTGGACGCACGCGCGCACACGGGTCTCACCTGTGCCAGGTAAACATCTGCCAGGCTCCCGGCAGGCGCTGCTCTGGGTGAGGCGTGGCGTGCTCGGCTTGTGTGGCGCTACTGCAGGTGGGCACCGGCGGGCCACAGGGACTGATAGAGTTATTAACAGGTGATGTGCTGGACAAAGTCCATCTGACCCCACAGAGCCTTAAATACATCACTGTCCAGCCGGGACCTCCAGAGACGATGCCTGGCTTTGTGTGTCGacttccattcatacgtaagcgaatgtgtcagactgg
>TCONS_00011028
CAGGAAGCGAAGAATGTTATTTCGAGGGGAAGGAAAGGTTGTGATGTTTGATTAAAGTTTATGAGGTCACATGTAACTAATTTTACACAATTGCTAAGTGATTCATCGTTTAAAACAATAACTACTGTATGataaaagtacattttgatttcatggcgACTTAAAAATACCAGAATCACAAGTATACTTCGATTTAGACTTATTACACGCAGGCCTGTTGTGTGAGTCTAACCGGCCCAATATGGCTGCCGGAGGGACGGCTCTCAGGCGCAATCAGTCCATCACGAGTAATTAACTGCCCCCTCCATCGGCGTGATGCGCCGGGCTCATCCATCCTGTGACACGGAGACCACGGAGAAAACGAGCTCTCGTTCATCATTCCTCCCTCACTCCCgactcacacaaacaaacaaataaacacataaacagcCCATTACGACGAGTCTCAGGCCTGGACGCACGCGCGCACACGGGTCTCACCTGTGCCAGGTAAACATCTGCCAGGCTCCCGGCAGGCGCTGCTCTGGGTGAGGCGTGGCGTGCTCGGCTTGTGTGGCGCTACTGCAGGTGGGCACCGGCGGGCCACAGGGACTGATAGAGTTATTAACAGGTGATGTGCTGGACAAAGTCCATCTGACCCCACAGAGCCTTAAATACATCACTGTCCAGCCGGGACCTCCAGAGACGATGCCTGGCTTTGTGTGTCGCTCTGTTAGGAGTCACTTGTGAGTTCCTGGTGAAGCAAAAGACAATTCATCAAAGGACAGGGTGAAGAAACTCATCAGAGGAATGAACAACAGCACCAGAGAAGCACACAGACAAGAAGCCTCAGAAACCGTCACTTGGTCTGGGAGAAACTGAACATCTGTGAACAGAGAATATCAGTCAGTCTGatgaaataaaagattatttacaGCTGAATCAAACAGTGTTGAGGAGCAGCTCGACATGTAGATCAAAAATTAGTGTAACTGCAGCTTCAGAAGTTTAACAGTAGCTGAGCTATATTTCGTTTTGTGAACCTGCAATGATCTAAACCTTAATTTTACAAGATCACATACTCCAATAGTGGAGGGGGAGAAAATCCTACTGGGCTTGTGCATTTGCGATTTGtattttgcatttgcatttttatttttattttagtttaatctaAAGTACAACCttactttaattttataaactttttaccaaaataaatattcaagataaaccaaaattaattaaattaattcattattagttcatgttcctaaatgcattaactaatgaagccTACTACTTTTAGATAGTAACTTTTTTTTCAGAAGGTTAGTTTAATAGTAGTTTAGACACTTTAACTTGTTTCAGAACCGCTTCCCCAACACTGCATTCAGACATGTGAAAAGCTGACCTGTGTTTCCTCCAGACCACACTAGAGGACCCATAGATAGTGACGCACTGTCATGGAGATCCAGAGCCCTGCGCTCTCTCCGCTGCTCTCCAGAGTCACAGCTCTAGAAGAGAAAAGAGTCAAATCCAGCTGTGCAAATCCCTGATAAACATCActgaacaaacacaaaaccaacagGAGTGCACCAAATCCCCAGCAGAGGGCAGAACAAACATGTTTAACAGCCTTCATCATTACACCTCAACACCATAACATTTCTGGTGGAAGATTCTGAAAGATTTGGGTTTTTAAACTCACTGTTGAGCATTGTCCGCTGGACAGAAGGCAAAGGTGAACAGCACAGTGCAGGTAAAGCTTAGTGGAGTTTGCAGTGAAGATGAACATCCTGAAGGAGAAACGGCTGCTTGTGGAGACGCCGTTCTGCAGCAGCTTCACTGTGTCGTCCTCAGGATTGGGACACCTGACGAGATCAACAACCacaataaacaaaccaaataatTTCATCACATGCATTCAAGTGCATTCATTCATCTAGTGCTTTAGttcttaaatattaaaaatatacaattatcAGAGAGATCTAGAAGTGacatgaattattatttattcagaagtagattttaaacatcagatcaatGTTTAATGAACAGAGAAGTCTTTACTCGTCAATGATGAGGTCCCAGCGGAGACTGTAATCAGGGTCAT
>TCONS_00011029
CGAGGGGAAGGAAAGGTTGTGATGTTTGATTAAAGTTTATGAGGTCACATGTAACTAATTTTACACAATTGCTAAGTGATTCATCGTTTAAAACAATAACTACTGTATGataaaagtacattttgatttcatggcgACTTAAAAATACCAGAATCACAAGTATACTTCGATTTAGACTTATTACACGCAGGCCTGTTGTGTGAGTCTAACCGGCCCAATATGGCTGCCGGAGGGACGGCTCTCAGGCGCAATCAGTCCATCACGAGTAATTAACTGCCCCCTCCATCGGCGTGATGCGCCGGGCTCATCCATCCTGTGACACGGAGACCACGGAGAAAACGAGCTCTCGTTCATCATTCCTCCCTCACTCCCgactcacacaaacaaacaaataaacacataaacagcCCATTACGACGAGTCTCAGGCCTGGACGCACGCGCGCACACGGGTCTCACCTGTGCCAGGTAAACATCTGCCAGGCTCCCGGCAGGCGCTGCTCTGGGTGAGGCGTGGCGTGCTCGGCTTGTGTGGCGCTACTGCAGGTGGGCACCGGCGGGCCACAGGGACTGATAGAGTTATTAACAGGTGATGTGCTGGACAAAGTCCATCTGACCCCACAGAGCCTTAAATACATCACTGTCCAGCCGGGACCTCCAGAGACGATGCCTGGCTTTGTGTGTCGCTCTGTTAGGAGTCACTTGTGAGTTCCTGGTGAAGCAAAAGACAATTCATCAAAGgggtagAAGTACCTGTGCAGTATCCTGAACACCCGGTTGGTGGACGCACAAGTTCATAGACATAATAGTTTCCTGGACACGCTTTCACTCTGATGGGGCTTGACTTGATATCACAGCAGCCGCTCCAgtctgtGCTGTTCCTGCTCTCACCAGTAGGTGAAGCCAGAGTTACTGTTCTGGTGTCTAAAATGGATCATCCCACCTGTG
>TCONS_00011030
AGGGGAAGGAAAGGTTGTGATGTTTGATTAAAGTTTATGAGGTCACATGTAACTAATTTTACACAATTGCTAAGTGATTCATCGTTTAAAACAATAACTACTGTATGataaaagtacattttgatttcatggcgACTTAAAAATACCAGAATCACAAGTATACTTCGATTTAGACTTATTACACGCAGGCCTGTTGTGTGAGTCTAACCGGCCCAATATGGCTGCCGGAGGGACGGCTCTCAGGCGCAATCAGTCCATCACGAGTAATTAACTGCCCCCTCCATCGGCGTGATGCGCCGGGCTCATCCATCCTGTGACACGGAGACCACGGAGAAAACGAGCTCTCGTTCATCATTCCTCCCTCACTCCCgactcacacaaacaaacaaataaacacataaacagcCCATTACGACGAGTCTCAGGCCTGGACGCACGCGCGCACACGGGTCTCACCTGTGCCAGGTAAACATCTGCCAGGCTCCCGGCAGGCGCTGCTCTGGGTGAGGCGTGGCGTGCTCGGCTTGTGTGGCGCTACTGCAGGTGGGCACCGGCGGGCCACAGGGACTGATAGAGTTATTAACAGGTGATGTGCTGGACAAAGTCCATCTGACCCCACAGAGCCTTAAATACATCACTGTCCAGCCGGGACCTCCAGAGACGATGCCTGGCTTTGTGTGTCGCACTCCTGGTTTGTAAGAAGTGCGTTTGACGGAACGGAAAGGAAACAGATTATAGAAAAACTGCAACTGCGAGACAAACAAATTGTCC
>TCONS_00011031
AGGGGAAGGAAAGGTTGTGATGTTTGATTAAAGTTTATGAGGTCACATGTAACTAATTTTACACAATTGCTAAGTGATTCATCGTTTAAAACAATAACTACTGTATGataaaagtacattttgatttcatggcgACTTAAAAATACCAGAATCACAAGTATACTTCGATTTAGACTTATTACACGCAGGCCTGTTGTGTGAGTCTAACCGGCCCAATATGGCTGCCGGAGGGACGGCTCTCAGGCGCAATCAGTCCATCACGAGTAATTAACTGCCCCCTCCATCGGCGTGATGCGCCGGGCTCATCCATCCTGTGACACGGAGACCACGGAGAAAACGAGCTCTCGTTCATCATTCCTCCCTCACTCCCgactcacacaaacaaacaaataaacacataaacagcCCATTACGACGAGTCTCAGGCCTGGACGCACGCGCGCACACGGGTCTCACCTGTGCCAGGTAAACATCTGCCAGGCTCCCGGCAGGCGCTGCTCTGGGTGAGGCGTGGCGTGCTCGGCTTGTGTGGCGCTACTGCAGGTGATGTGCTGGACAAAGTCCATCTGACCCCACAGAGCCTTAAATACATCACTGTCCAGCCGGGACCTCCAGAGACGATGCCTGGCTTTGTGTGTCGCTCTGTTAGGAGTCACTTGTGAGTTCCTGGTGAAGCAAAAGACAATTCATCAAAGGACAGGGTGAAGAAACTCATCAGAGGAATGAACAACAGCACCAGAGAAGCACACAGACAAGAAGCCTCAGAAACCGTCACTTGGTCTGGGAGAAACTGAACATCTGTGAACAGAGAATATCAGTCAGTCTGatgaaataaaagattatttacaGCTGAATCAAACAGTGTTGAGGAGCAGCTCGACATGTAGATCAAAAATTAGTGTAACTGCAGCTTCAGAAGTTTAACAGTAGCTGAGCTATATTTCGTTTTGTGAACCTGCAATGATCTAAACCTTAATTTTACAAGATCACATACTCCAATAGTGGAGGGGGAGAAAATCCTACTGGGCTTGTGCATTTGCGATTTGtattttgcatttgcatttttatttttattttagtttaatctaAAGTACAACCttactttaattttataaactttttaccaaaataaatattcaagataaaccaaaattaattaaattaattcattattagttcatgttcctaaatgcattaactaatgaagccTACTACTTTTAGATAGTAACTTTTTTTTCAGAAGGTTAGTTTAATAGTAGTTTAGACACTTTAACTTGTTTCAGAACCGCTTCCCCAACACTGCATTCAGACATGTGAAAAGCTGACCTGTGTTTCCTCCAGACCACACTAGAGGACCCATAGATAGTGACGCACTGTCATGGAGATCCAGAGCCCTGCGCTCTCTCCGCTGCTCTCCAGAGTCACAGCTCTAGAAGAGAAAAGAGTCAAATCCAGCTGTGCAAATCCCTGATAAACATCActgaacaaacacaaaaccaacagGAGTGCACCAAATCCCCAGCAGAGGGCAGAACAAACATGTTTAACAGCCTTCATCATTACACCTCAACACCATAACATTTCTGGTGGAAGATTCTGAAAGATTTGGGTTTTTAAACTCACTGTTGAGCATTGTCCGCTGGACAGAAGGCAAAGGTGAACAGCACAGTGCAGGTAAAGCTTAGTGGAGTTTGCAGTGAAGATGAACATCCTGAAGGAGAAACGGCTGCTTGTGGAGACGCCGTTCTGCAGCAGCTTCACTGTGTCGTCCTCAGGATTGGGACACCTGACGAGATCAACAACCacaataaacaaaccaaataatTTCATCACATGCATTCAAGTGCATTCATTCATCTAGTGCTTTAGttcttaaatattaaaaatatacaattatcAGAGAGATCTAGAAGTGacatgaattattatttattcagaagtagattttaaacatcagatcaatGTTTAATGAACAGAGAAGTCTTTACTCGTCAATGATGAGGTCCCAGCGGAGACTGTAATCAGGGTCAT
>TCONS_00011032
GGGAAGGAAAGGTTGTGATGTTTGATTAAAGTTTATGAGGTCACATGTAACTAATTTTACACAATTGCTAAGTGATTCATCGTTTAAAACAATAACTACTGTATGataaaagtacattttgatttcatggcgACTTAAAAATACCAGAATCACAAGTATACTTCGATTTAGACTTATTACACGCAGGCCTGTTGTGTGAGTCTAACCGGCCCAATATGGCTGCCGGAGGGACGGCTCTCAGGCGCAATCAGTCCATCACGAGTAATTAACTGCCCCCTCCATCGGCGTGATGCGCCGGGCTCATCCATCCTGTGACACGGAGACCACGGAGAAAACGAGCTCTCGTTCATCATTCCTCCCTCACTCCCgactcacacaaacaaacaaataaacacataaacagcCCATTACGACGAGTCTCAGGCCTGGACGCACGCGCGCACACGGTGAGAAACGCTCGGAATGATGATGTTTTCCTCTCCAAACAAACGTGTCTCTTTTGTGGAGGAGTTCTGGATTTGCTGTGGATCTGTTGAGTGCTGTTTCGGCTCAGTGCGCAGTCTGACAGGCATCTCGGCACAGCTGTAttctcggtgtgtgtgtgtgtgtttatgtgtacacATGCGTTAACACTTGTTTGCTGTTCTCGTCTCCGCTCAGGGTCTCACCTGTGCCAGGTAAACATCTGCCAGGCTCCCGGCAGGCGCTGCTCTGGGTGAGGCGTGGCGTGCTCGGCTTGTGTGGCGCTACTGCAGGTGATGTGCTGGACAAAGTCCATCTGACCCCACAGAGCCTTAAATACATCACTGTCCAGCCGGGACCTCCAGAGACGATGCCTGGCTTTGTGTGTCGCTCTGTTAGGAGTCACTTGTGAGTTCCTGGTGAAGCAAAAGACAATTCATCAAAGGACAGGGTG
>TCONS_00011033
GGAAAGGTTGTGATGTTTGATTAAAGTTTATGAGGTCACATGTAACTAATTTTACACAATTGCTAAGTGATTCATCGTTTAAAACAATAACTACTGTATGataaaagtacattttgatttcatggcgACTTAAAAATACCAGAATCACAAGTATACTTCGATTTAGACTTATTACACGCAGGCCTGTTGTGTGAGTCTAACCGGCCCAATATGGCTGCCGGAGGGACGGCTCTCAGGCGCAATCAGTCCATCACGAGTAATTAACTGCCCCCTCCATCGGCGTGATGCGCCGGGCTCATCCATCCTGTGACACGGAGACCACGGAGAAAACGAGCTCTCGTTCATCATTCCTCCCTCACTCCCgactcacacaaacaaacaaataaacacataaacagcCCATTACGACGAGTCTCAGGCCTGGACGCACGCGCGCACACGGGTCTCACCTGTGCCAGGTAAACATCTGCCAGGCTCCCGGCAGGCGCTGCTCTGGGTGAGGCGTGGCGTGCTCGGCTTGTGTGGCGCTACTGCAGGTGGGCACCGGCGGGCCACAGGGACTGATAGAGTTATTAACAGGTGATGTGCTGGACAAAGTCCATCTGACCCCACAGAGCCTTAAATACATCACTGTCCAGCCGGGACCTCCAGAGACGATGCCTGGCTTTGTGTGTCGCTCTGTTAGGAGTCACTTGTGAGTTCCTGGTGAAGCAAAAGACAATTCATCAAAGTAAACTAGGACAGGGTGAAGAAACTCATCAGAGGAATGAACAACAGCACCAGAGAAGCACACAGACAAGAAGCCTCAGAAACCGTCACTTGGTCTGGGAGAAACTGAACATCTGTGAACAGAGAATATCAGTCAGTCTGatgaaataaaagattatttacaGCTGAATCAAACAGTGTTGAGGAGCAGCTCGACATGTAGATCAAAAATTAGTGTAACTGCAGCTTCAGAAGTTTAACAGTAGCTGAGCTATATTTCGTTTTGTGAACCTGCAATGATCTAAACCTTAATTTTACAAGATCACATACTCCAATAGTGGAGGGGGAGAAAATCCTACTGGGCTTGTGCATTTGCGATTTGtattttgcatttgcatttttatttttattttagtttaatctaAAGTACAACCttactttaattttataaactttttaccaaaataaatattcaagataaaccaaaattaattaaattaattcattattagttcatgttcctaaatgcattaactaatgaagccTACTACTTTTAGATAGTAACTTTTTTTTCAGAAGGTTAGTTTAATAGTAGTTTAGACACTTTAACTTGTTTCAGAACCGCTTCCCCAACACTGCATTCAGACATGTGAAAAGCTGACCTGTGTTTCCTCCAGACCACACTAGAGGACCCATAGATAGTGACGCACTGTCATGGAGATCCAGAGCCCTGCGCTCTCTCCGCTGCTCTCCAGAGTCACAGCTCTAGAAGAGAAAAGAGTCAAATCCAGCTGTGCAAATCCCTGATAAACATCActgaacaaacacaaaaccaacagGAGTGCACCAAATCCCCAGCAGAGGGCAGAACAAACATGTTTAACAGCCTTCATCATTACACCTCAACACCATAACATTTCTGGTGGAAGATTCTGAAAGATTTGGGTTTTTAAACTCACTGTTGAGCATTGTCCGCTGGACAGAAGGCAAAGGTGAACAGCACAGTGCAGGTAAAGCTTAGTGGAGTTTGCAGTGAAGATGAACATCCTGAAGGAGAAACGGCTGCTTGTGGAGACGCCGTTCTGCAGCAGCTTCACTGTGTCGTCCTCAGGATTGGGACACCTGACGAGATCAACAACCacaataaacaaaccaaataatTTCATCACATGCATTCAAGTGCATTCATTCATCTAGTGCTTTAGttcttaaatattaaaaatatacaattatcAGAGAGATCTAGAAGTGacatgaattattatttattcagaagtagattttaaacatcagatcaatGTTTAATGAACAGAGAAGTCTTTACTCGTCAATGATGAGGTCCCAGCGGAGACTGTAATCAGGGTCAT

Function

GO:

id name namespace
GO:0007032 endosome organization biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011026 False 986 lncRNA 0.47 4 45883789 45921399
TCONS_00011027 False 743 lncRNA 0.50 4 45883994 45958520
TCONS_00011028 False 2098 lncRNA 0.43 5 45883994 46094803
TCONS_00011029 False 947 lncRNA 0.50 6 45884016 46144106
TCONS_00011030 False 771 lncRNA 0.50 4 45884018 45891103
TCONS_00011031 False 2031 lncRNA 0.42 5 45884018 46094803
TCONS_00011032 False 916 lncRNA 0.50 4 45884020 46120848
TCONS_00011033 True 2075 lncRNA 0.43 5 45884025 46094803

Neighbor

gene id symbol gene type direction distance location
XLOC_004959 NA coding upstream 155248 45707191 ~ 45728541 (+)
XLOC_004958 NA coding upstream 183807 45690812 ~ 45699982 (+)
XLOC_004957 gpx9 coding upstream 194836 45676667 ~ 45688953 (+)
XLOC_004956 NA coding upstream 515099 45364674 ~ 45368690 (+)
XLOC_004955 mrpl38 coding upstream 626578 45238292 ~ 45257211 (+)
XLOC_004963 NA coding downstream 44190 46188296 ~ 46231871 (+)
XLOC_004964 BX005305.3 coding downstream 242877 46386983 ~ 46391264 (+)
XLOC_004965 BX005305.4 coding downstream 260201 46404307 ~ 46408636 (+)
XLOC_004966 BX005305.1 coding downstream 281694 46425800 ~ 46447830 (+)
XLOC_004967 BX005305.2 coding downstream 317984 46462090 ~ 46466474 (+)
XLOC_004951 CABZ01052809.1 non-coding upstream 1256782 44626890 ~ 44627007 (+)
XLOC_004949 NA non-coding upstream 2191942 43688204 ~ 43691847 (+)
XLOC_004970 NA non-coding downstream 398565 46542671 ~ 46543189 (+)
XLOC_004973 CABZ01111725.1 non-coding downstream 459335 46603441 ~ 46603555 (+)
XLOC_004984 NA non-coding downstream 891615 47035721 ~ 47036420 (+)
XLOC_004991 NA non-coding downstream 1435916 47580022 ~ 47580566 (+)

Expression


Co-expression Network