LOC120548654 (LOC106573685,LOC106610772)


Basic Information

Item Value
gene id LOC120548654
gene name LOC106573685,LOC106610772
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 23707989 ~ 23710861 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU278342
CAAGGGATTGTGGGAAGTCAGACTGTCCGTCCTTGTGTGCGGTGCCTGTTCCTTACCTTAGCCTAACATAACAGAAGCTTTTGCAAAATGTACAGACATCTAATGGGACTTCGGCAGCTTTCCAGGCGGAGCATTTCCAGCAGTGCCCGCAGACAGATTGATAACTGcgtaaaggaaaaacaaaaactgtttcAGGAGGATAACGGTATACCTATCCATCTGAAGGGTGGATCGAAGGACGCTCTGCTCTACAGAGCCACAATGACTCTCACTGTGTTTGGGAGTGGATATGTCGTGTATGAGCTGTTAAGCGCTGCCATGCCCAAGAAGCCACAATGAAACAGGATTAGACGTATTTATCTGATGAAACAATCATGCACATCGCTCAGATTTGTAATCTGGGAAATAATTTGTCCCATCAATAATATCAGTATGTTTTgtgtttgaaatatttattgATTGTACAAATTATGAGctgcaaataataaaaatatacatcTCGTGACATTGtatcactttttaaaaa
>TU278343
CAAGGGATTGTGGGAAGTCAGACTGTCCGTCCTTGTGTGCGGTGCCTGTTCCTTACCTTAGCCTAACATAACAGAAGCTTTTGCAAAATGTACAGACATCTAATGGGACTTCGGCAGCTTTCCAGGCGGAGCATTTCCAGCAGTGCCCGCAGACAGATTGATAACTGcgtaaaggaaaaacaaaaactgtttcAGGTAGGGTAAATGTATGATCACATCAATATCCTATCTGATCTTTGTAACAGTGTTTTCAGAAGCTGTCTGACTCCTGTAAGCAACGGGAGTATTCTAATCTTACGAAGAACCTtctttctgacactttgaacaACATATCTGAGCAAAGGTTATATCGCGGATGTAAAGTGAAATTTGTATACACCTATTTACTTACTCTAAACAGTATGGCCGATTTGTTAAGCATTGTCGGTATGACACCATTTTCAGCAGTGTgttgatggcgcagtggatatgacacattcctttggtgtgggagacctgggtttgaatcccactgcgatacatcaaccaatgtgtccctgaacaagacacttaacccctagttgctccagaggcgtgccacctctgacatatatagcaattgtaagtcgcttttgGATAAATGACATGCAATGTAATGTGTGGTGAAATCTTAATTTAACATCCACCTGACCAATTTGGTTAGGCGTGTAGGCATCTTTTGTCATACTTTTGACTTGTGATTTGAAATTTTGCAGTGTTTAAAGCGAGACAAAGGGTGAGGTGTTTCTATACTGATAATGATCATGTTAAAGTGTCTACTCTATTCCCAGGTTCTGGAGACAGAATCTAATTTTATCCTGTTTGTAGCCTGACAGATAAGTATCAGTGGGTTTTCCCTCGTACAGTGTTGAAATGACCTTCGCCTGTAGCTGGGGGCTGGAGTTATACTAATTATGCTTGCAAGCTTCTAATTAAAAACCCATTACAAAATCAACATTCCAGTGTGGCAGGCTTTGCTGATCCTTGCATAGCGCTAGAAATTACTGTAGCCGTTAGTTGACAAATGGCCTACCCGTGTTTCTAAATCCCAGCTAGAGCAAGCACTGCTTCACTGCATAGTGTACTTTACGCCACCACGTAATTGCTATGGTTAACCAGAGATGATCTTCACCAAACTTTGAAAACcatagaaacagaaacacatgaAGCTAAAAGCCCATTGCATACATTTGAAGTAgggctgtatttaaaaaaaaaaaactatatagcTACCTTCATTCTTCACTCTTTGAACAGGAGGATAACGGTATACCTATCCATCTGAAGGGTGGATCGAAGGACGCTCTGCTCTACAGAGCCACAATGACTCTCACTGTGTTTGGGAGTGGATATGTCGTGTATGAGCTGTTAAGCGCTGCCATGCCCAAGAAGCCACAATGAAACAGGATTAGACGTATTTATCTGATGAAACAATCATGCACATCGCTCAGATTTGTAATCTGGGAAATAATTTGTCCCATCAATAATATCAGTATGTTTTgtgtttgaaatatttattgATTGTACAAATTATGAGctgcaaataataaaaatatacatcTCGTGACATTGtatcactttttaaaaa
>TU278344
CAAGGGATTGTGGGAAGTCAGACTGTCCGTCCTTGTGTGCGGTGCCTGTTCCTTACCTTAGCCTAACATAACAGAAGCTTTTGCAAAATGTACAGACATCTAATGGGACTTCGGCAGCTTTCCAGGCGGAGCATTTCCAGCAGTGCCCGCAGACAGATTGATAACTGcgtaaaggaaaaacaaaaactgtttcAGGTTCTGGAGACAGAATCTAATTTTATCCTGTTTGTAGCCTGACAGATAAGTATCAGTGGGTTTTCCCTCGTACAGTGTTGAAATGACCTTCGCCTGTAGCTGGGGGCTGGAGTTATACTAATTATGCTTGCAAGCTTCTAATTAAAAACCCATTACAAAATCAACATTCCAGTGTGGCAGGCTTTGCTGATCCTTGCATAGCGCTAGAAATTACTGTAGCCGTTAGTTGACAAATGGCCTACCCGTGTTTCTAAATCCCAGCTAGAGCAAGCACTGCTTCACTGCATAGTGTACTTTACGCCACCACGTAATTGCTATGGTTAACCAGAGATGATCTTCACCAAACTTTGAAAACcatagaaacagaaacacatgaAGCTAAAAGCCCATTGCATACATTTGAAGTAgggctgtatttaaaaaaaaaaaactatatagcTACCTTCATTCTTCACTCTTTGAACAGGAGGATAACGGTATACCTATCCATCTGAAGGGTGGATCGAAGGACGCTCTGCTCTACAGAGCCACAATGACTCTCACTGTGTTTGGGAGTGGATATGTCGTGTATGAGCTGTTAAGCGCTGCCATGCCCAAGAAGCCACAATGAAACAGGATTAGACGTATTTATCTGATGAAACAATCATGCACATCGCTCAGATTTGTAATCTGGGAAATAATTTGTCCCATCAATAATATCAGTATGTTTTgtgtttgaaatatttattgATTGTACAAATTATGAGctgcaaataataaaaatatacatcTCGTGACATTGtatcactttttaaaaa
>XM_039785010.1
CACGCGACCGGATGTAACAGGCCCACCAAGGGATTGTGGGAAGTCAGACTGTCCGTCCTTGTGTGCGGTGCCTGTTCCTTACCTTAGCCTAACATAACAGAAGCTTTTGCAAAATGTACAGACATCTAATGGGACTTCGGCAGCTTTCCAGGCGGAGCATTTCCAGCAGTGCCCGCAGACAGATTGATAACTGcgtaaaggaaaaacaaaaactgtttcAGGAGGATAACGGTATACCTATCCATCTGAAGGGTGGATCGAAGGACGCTCTGCTCTACAGAGCCACAATGACTCTCACTGTGTTTGGGAGTGGATATGTCGTGTATGAGCTGTTAAGCGCTGCCATGCCCAAGAAGCCACAATGAAACAGGATTAGACGTATTTATCTGATGAAACAATCATGCACATCGCTCAGATTTGTAATCTGGGAAATAATTTGTCCCATCAATAATATCAGTATGTTTTgtgtttgaaatatttattgATTGTACAAATTATGAGctgcaaataataaaaatatacatcTCGTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU278342 False 526 TUCP 0.41 4 23707989 23710835
TU278343 True 1606 lncRNA 0.40 3 23707989 23710835
TU278344 False 992 lncRNA 0.41 4 23707989 23710835
XM_039785010.1 False 531 mRNA 0.43 4 23708010 23710861

Neighbor

gene id symbol gene type direction distance location
col12a1a col12a1 coding downstream 620 23650668 ~ 23707369 (-)
dlgap2a dlgap2 coding downstream 189994 23348792 ~ 23517995 (-)
cln8 cln8 coding downstream 366198 23337958 ~ 23341791 (-)
arhgef10 arhgef10 coding downstream 370872 23279466 ~ 23337117 (-)
trnai-aau_29 NA coding downstream 378747 23329169 ~ 23329242 (-)
tmem30aa LOC103353750,LOC104952165 coding upstream 1031 23711892 ~ 23717389 (-)
LOC120549835 LOC103353749 coding upstream 7030 23717891 ~ 23742976 (-)
LOC120549330 cldn20,LOC102228876 coding upstream 51473 23762334 ~ 23767849 (-)
LOC120549331 tiam2,scaf8 coding upstream 72119 23782980 ~ 23904648 (-)
ipcef1 cnksr3 coding upstream 193942 23904803 ~ 23914310 (-)
G205493 NA non-coding downstream 133977 23536946 ~ 23574012 (-)
G205492 NA non-coding downstream 147797 23528223 ~ 23560192 (-)
G205494 LOC102076813 non-coding downstream 172426 23529490 ~ 23535563 (-)
G205489 NA non-coding downstream 183675 23518903 ~ 23524314 (-)
LOC120548729 NA non-coding downstream 441335 23255878 ~ 23266654 (-)
LOC120548836 NA non-coding upstream 475935 24186796 ~ 24197384 (-)
G205643 NA non-coding upstream 521781 24232642 ~ 24233109 (-)
LOC120549041 NA non-coding upstream 719113 24429974 ~ 24433833 (-)
G205701 NA non-coding upstream 732958 24443819 ~ 24446396 (-)
G205702 zbtb8a non-coding upstream 765074 24475935 ~ 24476893 (-)
arid1b LOC103368034,LOC102292653,LOC101481705,LOC102196556 other downstream 473191 23024161 ~ 23234798 (-)
LOC120549684 NA other downstream 760179 22944937 ~ 22947810 (-)
G205380 NA other downstream 770132 22910107 ~ 22937857 (-)
LOC120549283 khdrbs1 other downstream 924517 22778005 ~ 22783472 (-)
zbtb42 zbtb42,LOC102793331 other downstream 1260046 22440729 ~ 22447943 (-)
runx3 runx3 other upstream 905057 24615918 ~ 24664770 (-)
rsrp1 NA other upstream 1041292 24752153 ~ 24755421 (-)
fndc5a fndc5,LOC108237574 other upstream 1132860 24843721 ~ 24877345 (-)
G205845 bsdc1 other upstream 1242345 24953206 ~ 24957041 (-)
G205866 marcksl1,LOC102222432,LOC104961040,LOC106610887,LOC105925978,LOC102786723 other upstream 1361494 25072355 ~ 25074124 (-)

Expression


Co-expression Network