LOC120549840


Basic Information

Item Value
gene id LOC120549840
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 28012039 ~ 28034752 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU279676
gtggaatgcagccatcattaatgggtttgaatacacctgtgcttttcctactatgacatgtcaacatgtctgccgtgaaaaaaggtctatctaagccaatcagagatcaCTGCCACAGTCTGAGACGACATGTAGAGCAAGTTTGAGAGAGAAATATGCTTTGGAAACGTGTTAAGTGTTAACGTTTAAAACGTGGACGTTAAAGCGGAGTCAGCTGTAAACGCCGGCCGCAGCTTTCACAGAGGACTTCGCTGGAGGACAGTGCTAATTAGCCGTTGTGGCTACTGTCTTGGGACGGGGGAGCCACTCCGCCGCCGGGCCTGCGTTGCCACACAGACGGATCGCTTGCCAAACCTTGCCTGCAGCTTGTCTCATCAGCCCAGCTCGTCGCGGATCGGATGCGAAGACTCCATAAAGAGTCATCGGGGAGATGTCACTGCCTGTTCCATCCCCTGGCATTGAAACCTCCGCCGTTGCAGCAAAAGACAAGAAGTTGCGGACGAGCTCTAGCTGCCCGCATGACCACTGGAATACCAAGTAACTGTGAATGGAGACAGCAGTGCCACTTTCCACTGGCAAGAGAGACAAGGTTCAGCACCATGTGCCGAGAATACAAACAACACCCCGGGTCCTTCACAGATTcagaaaacgctcctgtggttTTCGGATGTGGGGCTGCAGGATATTTTGACGATTCACATGACAAGCTGCTGGGTGCATTAAAGGGCCAGTATGTTTTTCTGCCCCATAGCAGAACGTGACCATGAAATATCCATCGATGGTCGATGGGGGTTGTTGATCAATACCAATGGCCGTAAATTACTGGCACCGAGGGTTTTGTCTTTCACCTGAGTGTCAAGGTTTGCCAGATTTGTTTTGTGGAAGTTCTTGCAGGGTTGTTTGAAGTCTTTCTAGCACAAGACCGATCAGTAAAGGTCATAGAGGACTAAATGTCCCTAAAAACATTAAACAATAGACGTCATCAAACACCATACCGTAAATTCTCCTAAAGCCCGTTTGTGTGGCTGACATGAGCCAATAAAGGCTTGTCCCTAATAAAGACCGGTTTAAAAAGATTTTGAAGAGGTTGAATTGCCTGTAGTTTAATGGCTTACATGGTACATTtatggagccaggacagtgacagtaacctgtagtattgaaaataaaaattggcattgaaacaacaaatattggaactgaaaaatgttgaactgaaatataaaacacaaacatcaaaaagtattaatctcacaatgctattattttatttcactttgacatttgtttggattatgataggtttttcaatgccaatctacattttttcttgatgtctgactttttt
>XR_005637442.1
tgcagccatcattaatgggtttgaatacacctgtgcttttcctactatgacatgtcaacatgtctgccgtgaaaaaaggtctatctaagccaatcagagatcaCTGCCACAGTCTGAGACGACATGTAGAGCAAGTTTGAGAGAGAAATATGCTTTGGAAACGTGTTAAGTGTTAACGTTTAAAACGTGGACGTTAAAGCGGAGTCAGCTGTAAACGCCGGCCGCAGCTTTCACAGAGGACTTCGCTGGAGGACAGTGCTAATTAGCCGTTGTGGCTACTGTCTTGGGACGGGGGAGCCACTCCGCCGCCGGGCCTGCGTTGCCACACAGACGGATCGCTTGCCAAACCTTGCCTGCAGCTTGTCTCATCAGCCCAGCTCGTCGCGGATCGGATGCGAAGACTCCATAAAGAGTCATCGGGGAGATGTCACTGCCTGTTCCATCCCCTGGCATTGAAACCTCCGCCGTTGCAGCAAAAGACAAGAAGTTGCGGACGAGCTCTAGCTGCCCGCATGACCACTGGAATACCAAGTAACTGTGAATGGAGACAGCAGTGCCACTTTCCACTGGCAAGAGAGACAAGGTTCAGCACCATGTGCCGAGAATACAAACAACACCCCGGGTCCTTCACAGATTcagaaaacgctcctgtggttTTCGGATGTGGGGCTGCAGGATATTTTGACGATTCACATGACAAGCTGCTGGGTGCATTAAAGGGCCAGTATGTTTTTCTGCCCCATAGCAGAACGTGACCATGAAATATCCATCGATGGTCGATGGGGGTTGTTGATCAATACCAATGGCCGTAAATTACTGGCACCGAGGGTTTTGTCTTTCACCTGAGTGTCAAGGTTTGCCAGATTTGTTTTGTGGAAGTTCTTGCAGGGTTGTTTGAAGTCTTTCTAGCACAAGACCGATCAGTAAAGGTCATAGAGGACTAAATGTCCCTAAAAACATTAAACAATAGACGTCATCAAACACCATACCGTAAATTCTCCTAAAGCCCGTTTGTGTGGCTGACATGAGCCAATAAAGGCTTGTCCCTAATAAAGACCGGTTTAAAAAGATTTTGAAGAGGTTGAATTGCCTGTAGTTTAATGGCTTACATGGTACATTtatggagccaggacagtgacagtaacctgta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU279676 True 1348 TUCP 0.45 3 28012039 28034752
XR_005637442.1 False 1150 lncRNA 0.48 3 28012231 28034746

Neighbor

gene id symbol gene type direction distance location
spdya LOC104966966 coding downstream 104389 27902603 ~ 27907650 (-)
wdr43 wdr43 coding downstream 116543 27876728 ~ 27895496 (-)
alk alk,LOC102783525 coding downstream 218331 27396852 ~ 27793708 (-)
c20h2orf50 NA coding downstream 674996 27334404 ~ 27337043 (-)
slc66a3 pqlc3 coding downstream 678656 27323868 ~ 27333383 (-)
supt7l supt7l coding upstream 435526 28470278 ~ 28482140 (-)
si:dkey-16j16.4 LOC103368641,LOC104923321,LOC101470634,LOC102292856 coding upstream 456302 28491054 ~ 28511076 (-)
rbks rbks coding upstream 499810 28534562 ~ 28579368 (-)
LOC120549604 LOC104923339,LOC104947406,LOC103376542,LOC100690106 coding upstream 678515 28713267 ~ 28715979 (-)
wdr35 wdr35 coding upstream 683833 28718585 ~ 28736104 (-)
LOC120549841 NA non-coding downstream 33 28010735 ~ 28012006 (-)
LOC120549842 NA non-coding downstream 73860 27924608 ~ 27938179 (-)
G206498 NA non-coding downstream 114593 27897174 ~ 27897446 (-)
G206411 NA non-coding downstream 571127 27103257 ~ 27440912 (-)
G206451 NA non-coding downstream 661502 27347626 ~ 27350537 (-)
G206535 NA non-coding upstream 211013 28245765 ~ 28246032 (-)
LOC120548851 NA non-coding upstream 302553 28337305 ~ 28342374 (-)
LOC120548716 NA non-coding upstream 393499 28428251 ~ 28430665 (-)
G206585 NA non-coding upstream 491486 28526238 ~ 28526657 (-)
G206593 NA non-coding upstream 630658 28665410 ~ 28673073 (-)
G206198 fbxo33,LOC102800092 other downstream 1186975 26821688 ~ 26825064 (-)
LOC120549744 NA other downstream 2644172 25332890 ~ 25367867 (-)
gnmt gnmt other downstream 2667385 25268304 ~ 25344654 (-)
G205866 marcksl1,LOC102222432,LOC104961040,LOC106610887,LOC105925978,LOC102786723 other downstream 2937915 25072355 ~ 25074124 (-)
G205845 bsdc1 other downstream 3054998 24953206 ~ 24957041 (-)
LOC120549715 lrfn2,LOC103357516,LOC102785515 other upstream 11453 28046205 ~ 28204448 (-)
G206919 ccdc88c other upstream 1899510 29934262 ~ 29934566 (-)
LOC120549387 NA other upstream 2647175 30681927 ~ 30703278 (-)
G207202 NA other upstream 3148271 31183023 ~ 31183555 (-)
G207327 arhgap5 other upstream 3941066 31975818 ~ 31979760 (-)

Expression


Co-expression Network